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* Cleanup DIST* variables.Mathieu Arnold2015-05-111-2/+1
* Reassign biology/ perl modules to perl@.Adam Weinberger2015-05-088-21/+22
* - Update to 36.3.7aWen Heping2015-05-073-6/+11
* biology/seqtools: 4.33 -> 4.34.1Kurt Jaeger2015-05-063-3/+7
* Update ports in the [bcd]* categories to not use GH_COMMIT.Mathieu Arnold2015-05-064-7/+4
* - UnbreakWen Heping2015-05-042-2/+11
* Mark BROKEN: fails to configureAntoine Brodin2015-04-281-0/+2
* biology/ncbi-blast+: Add additionl MASTER_SITE to unbreak fetchJohn Marino2015-04-251-3/+2
* ${ENV} does not exist, it is called ${SETENV}.Mathieu Arnold2015-04-131-1/+1
* biology/seaview: Unbreak -- it fetches fineJohn Marino2015-04-111-4/+1
* biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreakJohn Marino2015-04-112-6/+5
* biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCHJohn Marino2015-04-111-0/+1
* biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreakJohn Marino2015-04-113-15/+15
* Update biology/paml to 4.8a and unbreak.Brad Davis2015-04-102-7/+5
* Convert bsd.gnustep.mk to USES=gnustepBaptiste Daroussin2015-04-091-4/+2
* Mark as broken unfetchable portsBaptiste Daroussin2015-04-0510-0/+18
* biology/ruby-bio: mark broken with ruby 2.2Steve Wills2015-04-031-1/+7
* - Remove deprecated optionDmitry Marakasov2015-04-021-9/+16
* biology/seqtools: 4.32 -> 4.33Kurt Jaeger2015-03-312-3/+3
* - Add LICENSESunpoet Po-Chuan Hsieh2015-03-281-4/+6
* Upgrade from 3.6.6 to 3.6.7. Be sure to not extract the zlibMikhail Teterin2015-03-242-3/+4
* 6 ports categories: Remove $PTHREAD_LIBSJohn Marino2015-03-243-10/+8
* biology/seaview: Update version 4.5.3.4=>4.5.4Muhammad Moinur Rahman2015-03-243-41/+5
* - Update to version 1.16.1Alexey Dokuchaev2015-03-233-8/+8
* biology/segan: Limit GCC to 4.8 while waiting for updateJohn Marino2015-03-211-1/+1
* For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME toBryan Drewery2015-03-201-2/+2
* Convert to new USE_GITHUB.Mathieu Arnold2015-03-202-11/+4
* Fix packaging as a user (pkg already takes care of credentials)Baptiste Daroussin2015-03-181-2/+2
* - Simplify MASTER_SITESDmitry Marakasov2015-03-171-3/+9
* biology/seaview: UNBREAKMuhammad Moinur Rahman2015-03-163-15/+38
* Some OCD cleanups on some of the perl@ ports.Adam Weinberger2015-03-125-984/+976
* - Add empty directory to plistDmitry Marakasov2015-03-111-0/+1
* Update from 7.1.1 to 7.1.2.Mikhail Teterin2015-03-112-3/+3
* Unbreak by upgrading to March 5, 2015 "release" from upstream.Mikhail Teterin2015-03-085-106/+103
* Unbreak by updating from 7.0.1 to 7.1.1. Hopefully, the authors willMikhail Teterin2015-03-082-6/+4
* biology/samtools: update 1.1 -> 1.2Bartek Rutkowski2015-03-062-4/+5
* biology/htslib: update 1.1 -> 1.2.1Bartek Rutkowski2015-03-066-23/+45
* Add a run dependency used by update_blastdb.plTilman Keskinoz2015-03-061-1/+2
* - Update to 1.13.10Danilo Egea Gondolfo2015-03-043-4/+4
* Remove Authors from pkg-descrBaptiste Daroussin2015-03-021-1/+0
* Remove TEST dependency on p5-Test-Simple when the version in core isAdam Weinberger2015-02-261-1/+0
* Update Unipro UGENE to version 1.16.0 (documentation was also rerolled).Alexey Dokuchaev2015-02-243-9/+18
* Mark BROKEN: Fails to link, tries to use internal fltk symbolsAntoine Brodin2015-02-211-0/+2
* biology/seqtools: 4.31 -> 4.32Kurt Jaeger2015-02-122-3/+3
* Mark BROKEN: Checksum and size mismatchAntoine Brodin2015-01-311-0/+1
* - Update to 3.6.6Wen Heping2015-01-313-5/+5
* - Update to 1.13.9Danilo Egea Gondolfo2015-01-303-4/+4
* misc/otter & biology/ariadne: Not jobs safeJohn Marino2015-01-211-0/+2
* biology/py-biopython:Max Brazhnikov2015-01-191-3/+5
* Designatate 4 ports as unsafe for parallel buildingJohn Marino2015-01-191-0/+1
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