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* biology/hyphy: Update to version 2.5.7Joseph Mingrone2020-03-202-4/+4
* Deprecate java/openjfx8-devel consumersTobias Kortkamp2020-03-191-0/+3
* biology/hyphy: Update to version 2.5.6Joseph Mingrone2020-03-173-5/+4
* Mark BROKEN: fails to buildAntoine Brodin2020-03-101-0/+2
* Drop dependency on devel/openmpJan Beich2020-03-083-7/+5
* Deprecate some ports using deprecated version of pythonAntoine Brodin2020-03-082-0/+6
* biology/ngs-sdk: Update 2.10.2 -> 2.10.4Yuri Victorovich2020-03-073-5/+5
* biology/jellyfish: Patch for clang 10Jason W. Bacon2020-03-073-3/+23
* Return theraven's ports to the pool after safekeeping his commit bit.Rene Ladan2020-03-051-1/+1
* biology/gatk: Update 4.1.4.1 -> 4.1.5.0Yuri Victorovich2020-03-043-18/+19
* biology/hyphy: Update to version 2.5.5Joseph Mingrone2020-03-023-15/+4
* biology/bowtie2: Upgrade to 2.4.1Jason W. Bacon2020-03-013-53/+30
* biology/mrbayes: Update to version 3.2.7Joseph Mingrone2020-02-296-39/+60
* Deprecate a few portsAntoine Brodin2020-02-233-0/+9
* biology/stringtie: fix build on GCC architecturesPiotr Kubaj2020-02-231-1/+1
* biology/hyphy: Update to version 2.5.4Joseph Mingrone2020-02-215-211/+45
* biology/vsearch: Upgrade to 2.14.2Jason W. Bacon2020-02-192-5/+5
* biology/stringtie: Update 1.3.4d -> 2.1.1Yuri Victorovich2020-02-165-97/+19
* biology/kallisto: Upgrade to 0.46.2Jason W. Bacon2020-02-152-6/+10
* biology/py-bx-python: Update 0.8.6 -> 0.8.8Yuri Victorovich2020-02-152-8/+8
* biology/py-macs2: Bump revision for previous run dep additionJason W. Bacon2020-02-091-0/+1
* biology/py-macs2: Add missing numpy run dependJason W. Bacon2020-02-091-0/+1
* biology/gatk: Change from gradle5 to gradle6Yuri Victorovich2020-02-092-6/+7
* Clean up MakefileSunpoet Po-Chuan Hsieh2020-02-081-1/+0
* biology/seaview: Update version 4.7=>5.0Muhammad Moinur Rahman2020-02-055-69/+4
* biology/diamond: Update to version 0.9.30Joseph Mingrone2020-02-032-4/+4
* Fix math/openblas and bump dependent portsSteve Wills2020-01-303-3/+3
* biology/hmmer: update to 3.3Fernando Apesteguía2020-01-294-9/+26
* biology/infernal: update to 1.1.3Fernando Apesteguía2020-01-275-22/+53
* Remove expired ports:Rene Ladan2020-01-2714-258/+0
* biology/py-pysam: Update 0.15.3 -> 0.15.4Yuri Victorovich2020-01-232-4/+4
* math/openblas: Update to 0.3.7Steve Wills2020-01-211-1/+1
* biology/gatk: Update 4.1.3.0 -> 4.1.4.1Yuri Victorovich2020-01-204-18/+18
* - Update WWWDmitry Marakasov2020-01-192-2/+2
* biology/abyss: Broken on i386Yuri Victorovich2020-01-181-0/+2
* biology/muscle: unbreak in -CURRENTFernando Apesteguía2020-01-171-0/+3
* biology/ngs-sdk: Update 2.10.1 -> 2.10.2Yuri Victorovich2020-01-173-5/+5
* biology/gemma: Unbreak buildJason W. Bacon2020-01-144-9/+44
* devel/jsoncpp: Update 1.8.1 -> 1.9.2Yuri Victorovich2020-01-131-0/+1
* biology/muscle: update to 3.8.1551Fernando Apesteguía2020-01-135-48/+44
* biology/tRNAscan-SE: update to 2.0.5Fernando Apesteguía2020-01-132-7/+7
* biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich2020-01-133-14/+8
* biology/ngs-sdk: Update 2.10.0 -> 2.10.1Yuri Victorovich2020-01-123-5/+5
* biology/py-macs2: Upgrade to 2.2.6Jason W. Bacon2020-01-112-14/+11
* Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over ...Sunpoet Po-Chuan Hsieh2020-01-081-2/+0
* Update to 1.7.5Sunpoet Po-Chuan Hsieh2020-01-083-8/+5
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2020-01-081-2/+3
* biology/viennarna: Update 2.4.13 -> 2.4.14Yuri Victorovich2020-01-063-5/+8
* biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich2020-01-052-7/+6
* Mark a few ports broken (unfetchable)Antoine Brodin2020-01-051-0/+1
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