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* biology/hyphy: Update to version 2.5.7Joseph Mingrone2020-03-202-4/+4
| | | | | | | Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.7 Notes: svn path=/head/; revision=528753
* Deprecate java/openjfx8-devel consumersTobias Kortkamp2020-03-191-0/+3
| | | | | | | | | | | Chase r527795 and put a deprecation notice on all openjfx8-devel dependent ports too. Also deprecate devel/gradle4 which is only needed to build igv and openjfx8-devel. Notes: svn path=/head/; revision=528706
* biology/hyphy: Update to version 2.5.6Joseph Mingrone2020-03-173-5/+4
| | | | | | | Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.6 Notes: svn path=/head/; revision=528590
* Mark BROKEN: fails to buildAntoine Brodin2020-03-101-0/+2
| | | | | | | | | | | ../include/pbcopper/json/internal/json.hpp:1229:9: error: static_assert failed due to requirement 'sizeof(nlohmann::basic_json<std::map, std::vector, std::__1::basic_string<char>, bool, long, unsigned long, double, std::allocator, adl_serializer>) == 0' "could not find from_json() method in T's namespace" static_assert(sizeof(BasicJsonType) == 0, ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ Reported by: pkg-fallout Notes: svn path=/head/; revision=528170
* Drop dependency on devel/openmpJan Beich2020-03-083-7/+5
| | | | | | | | | | - Drop if devel/llvm* was used as a substitute Approved by: yuri, rene (earlier version) Differential Revision: https://reviews.freebsd.org/D23020 Notes: svn path=/head/; revision=528082
* Deprecate some ports using deprecated version of pythonAntoine Brodin2020-03-082-0/+6
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=528058
* biology/ngs-sdk: Update 2.10.2 -> 2.10.4Yuri Victorovich2020-03-073-5/+5
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=527973
* biology/jellyfish: Patch for clang 10Jason W. Bacon2020-03-073-3/+23
| | | | | | | | | | Add cast to silence implicit conversion error PR: ports/244645 Submitted by: dim Notes: svn path=/head/; revision=527971
* Return theraven's ports to the pool after safekeeping his commit bit.Rene Ladan2020-03-051-1/+1
| | | | Notes: svn path=/head/; revision=527847
* biology/gatk: Update 4.1.4.1 -> 4.1.5.0Yuri Victorovich2020-03-043-18/+19
| | | | | | | Reported by: repology Notes: svn path=/head/; revision=527743
* biology/hyphy: Update to version 2.5.5Joseph Mingrone2020-03-023-15/+4
| | | | | | | Upstream changes: https://github.com/veg/hyphy/releases/tag/2.5.5 Notes: svn path=/head/; revision=527606
* biology/bowtie2: Upgrade to 2.4.1Jason W. Bacon2020-03-013-53/+30
| | | | | | | | | | Numerous bugfixes and enhancements Enable experimental support for aarch64 Reported by: portscout Notes: svn path=/head/; revision=527560
* biology/mrbayes: Update to version 3.2.7Joseph Mingrone2020-02-296-39/+60
| | | | | | | | PR: 243237 Submitted by: mzaki@e-mail.ne.jp (maintainer, with modifications) Notes: svn path=/head/; revision=527483
* Deprecate a few portsAntoine Brodin2020-02-233-0/+9
| | | | | | | With hat: portmgr Notes: svn path=/head/; revision=526925
* biology/stringtie: fix build on GCC architecturesPiotr Kubaj2020-02-231-1/+1
| | | | | | | | Use C++11 compiler: cc1plus: error: unrecognized command line option "-std=c++0x" Notes: svn path=/head/; revision=526916
* biology/hyphy: Update to version 2.5.4Joseph Mingrone2020-02-215-211/+45
| | | | | | | Upstream changes: https://github.com/veg/hyphy/releases Notes: svn path=/head/; revision=526622
* biology/vsearch: Upgrade to 2.14.2Jason W. Bacon2020-02-192-5/+5
| | | | | | | | | Numerous small bug fixes and enhancements Reported by: portscout Notes: svn path=/head/; revision=526534
* biology/stringtie: Update 1.3.4d -> 2.1.1Yuri Victorovich2020-02-165-97/+19
| | | | | | | | PR: 243718 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp> (maintainer) Notes: svn path=/head/; revision=526322
* biology/kallisto: Upgrade to 0.46.2Jason W. Bacon2020-02-152-6/+10
| | | | | | | | | | | Kallisto no longer builds in hdf5 by default, but it is still required for some downstream tools like Sleuth. Forcing it ON for now, but will disable it in a future upgrade. Reported by: portscout Notes: svn path=/head/; revision=526244
* biology/py-bx-python: Update 0.8.6 -> 0.8.8Yuri Victorovich2020-02-152-8/+8
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=526239
* biology/py-macs2: Bump revision for previous run dep additionJason W. Bacon2020-02-091-0/+1
| | | | Notes: svn path=/head/; revision=525659
* biology/py-macs2: Add missing numpy run dependJason W. Bacon2020-02-091-0/+1
| | | | Notes: svn path=/head/; revision=525658
* biology/gatk: Change from gradle5 to gradle6Yuri Victorovich2020-02-092-6/+7
| | | | Notes: svn path=/head/; revision=525625
* Clean up MakefileSunpoet Po-Chuan Hsieh2020-02-081-1/+0
| | | | Notes: svn path=/head/; revision=525568
* biology/seaview: Update version 4.7=>5.0Muhammad Moinur Rahman2020-02-055-69/+4
| | | | | | | Relnotes:http://doua.prabi.fr/software/seaview Notes: svn path=/head/; revision=525314
* biology/diamond: Update to version 0.9.30Joseph Mingrone2020-02-032-4/+4
| | | | | | | Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.30 Notes: svn path=/head/; revision=525045
* Fix math/openblas and bump dependent portsSteve Wills2020-01-303-3/+3
| | | | | | | | | | | | | | | | | | | | * Fix build on i386 [1] * Fix science/code_saturne build with new openblas [2] * Avoid installing private headers [3] * Prevent build from optimizing for host by correcting build confg [4] * Bump portrevision of dependent ports [5] This is correcting issues from r523749 [1][2][4] and r515970 [3] PR: 231371 Reported by: build cluster [1] Reported by: Dima Pasechnik <dimpase+freebsd@gmail.com> [2] Reported by: many [5] Reviewed by: mat, bapt Approved by: implicit, since this is a build fix Notes: svn path=/head/; revision=524642
* biology/hmmer: update to 3.3Fernando Apesteguía2020-01-294-9/+26
| | | | | | | | PR: 243244 Submitted by: mzaki@e-mail.ne.jp (maintainer) Notes: svn path=/head/; revision=524533
* biology/infernal: update to 1.1.3Fernando Apesteguía2020-01-275-22/+53
| | | | | | | | PR: 243247 Submitted by: mzaki@e-mail.ne.jp (maintainer) Notes: svn path=/head/; revision=524268
* Remove expired ports:Rene Ladan2020-01-2714-258/+0
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python27 2020-01-27 audio/py-shout: Unmaintained, uses EOLed python27 2020-01-27 audio/py-speex: Unmaintained, uses EOLed python27 2020-01-27 audio/pytone: Unmaintained, uses EOLed python27 2020-01-27 audio/solfege: Unmaintained, uses EOLed python27 2020-01-27 audio/trommler: Unmaintained, uses EOLed python27 2020-01-27 benchmarks/pybench: Unmaintained, uses EOLed python27 2020-01-27 biology/pycogent: Unmaintained, uses EOLed python27 2020-01-27 biology/unanimity: Unmaintained, uses EOLed python27 2020-01-27 cad/pythoncad: Unmaintained, uses EOLed python27 2020-01-27 chinese/bg5pdf: Unmaintained, uses EOLed python27 2020-01-27 comms/py-libimobiledevice: Unmaintained, uses EOLed python27 2020-01-27 converters/py-bcode: Unmaintained, uses EOLed python27 2020-01-27 converters/py-iconv: Unmaintained, uses EOLed python27 2020-01-27 converters/py-zfec: Unmaintained, uses EOLed python27 2020-01-27 databases/gadfly: Unmaintained, uses EOLed python27 2020-01-27 databases/metakit: Unmaintained, uses EOLed python27 2020-01-27 databases/openark-kit: Unmaintained, uses EOLed python27 2020-01-27 databases/py-MySQLdb55: Unmaintained, uses EOLed python27 2020-01-27 databases/py-MySQLdb56: Unmaintained, uses EOLed python27 2020-01-27 databases/py-forgetsql: Unmaintained, uses EOLed python27 2020-01-27 databases/py-oops: Unmaintained, uses EOLed python27 2020-01-27 databases/py-rrdtool_lgpl: Unmaintained, uses EOLed python27 2020-01-27 deskutils/conkyemail: No longer maintained by upstream 2020-01-27 deskutils/cycle: Unmaintained, uses EOLed python27 2020-01-27 deskutils/everygui: Unmaintained, uses EOLed python27 2020-01-27 deskutils/ganyremote: Unmaintained, uses EOLed python27 2020-01-27 deskutils/pypanel: Unmaintained, uses EOLed python27 2020-01-27 deskutils/taskcoach: Unmaintained, uses EOLed python27 2020-01-27 deskutils/tel: Unmaintained, uses EOLed python27 2020-01-27 deskutils/tnote: Unmaintained, uses EOLed python27 2020-01-27 deskutils/vnc2flv: Unmaintained, uses EOLed python27 2020-01-27 deskutils/wammu: Unmaintained, uses EOLed python27 2020-01-27 devel/bbfreeze: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-builder: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-colo: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-externals: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-git: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-gtk: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-loom: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-pipeline: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-rewrite: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-scmproj: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-stats: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-svn: Unmaintained, uses EOLed python27 2020-01-27 devel/bzr-upload: Unmaintained, uses EOLed python27 2020-01-27 devel/ditrack: Unmaintained, uses EOLed python27 2020-01-27 devel/drpython: Unmaintained, uses EOLed python27 2020-01-27 devel/epydoc: Unmaintained, uses EOLed python27 2020-01-27 devel/fb303: Unmaintained, uses EOLed python27 2020-01-27 devel/fnorb: Unmaintained, uses EOLed python27 2020-01-27 devel/gazpacho: Unmaintained, uses EOLed python27 2020-01-27 devel/libmpsse: Unmaintained, uses EOLed python27 2020-01-27 devel/open-usp-tukubai: Unmaintained, uses EOLed python27 2020-01-27 devel/phpbt: Unmaintained, uses EOLed python27 2020-01-27 devel/py-anonfunc: Unmaintained, uses EOLed python27 2020-01-27 devel/py-bison: Unmaintained, uses EOLed python27 2020-01-27 devel/py-fortran: Unmaintained, uses EOLed python27 2020-01-27 devel/py-grouch: Unmaintained, uses EOLed python27 2020-01-27 devel/py-mwlib.rl: Unmaintained, uses EOLed python27 2020-01-27 devel/py-nagioscheck: Unmaintained, uses EOLed python27 2020-01-27 devel/py-ncurses: Unmaintained, uses EOLed python27 2020-01-27 devel/py-ocempgui: Unmaintained, uses EOLed python27 2020-01-27 devel/py-palm: Unmaintained, uses EOLed python27 2020-01-27 devel/py-pyechonest: Unmaintained, uses EOLed python27 2020-01-27 devel/py-resourcepackage: Unmaintained, uses EOLed python27 2020-01-27 devel/py-rlcompleter2: Unmaintained, uses EOLed python27 2020-01-27 devel/py-spark: Unmaintained, uses EOLed python27 2020-01-27 devel/py-xoltar-toolkit: Unmaintained, uses EOLed python27 2020-01-27 devel/py-zkpython: Unmaintained, uses EOLed python27 2020-01-27 devel/pychecker: Unmaintained, uses EOLed python27 2020-01-27 devel/pymacs: Unmaintained, uses EOLed python27 2020-01-27 devel/trac-bitten: Unmaintained, uses EOLed python27 2020-01-27 devel/wxGlade: Unmaintained, uses EOLed python27 2020-01-27 emulators/catapult: Unmaintained, uses EOLed python27 2020-01-27 emulators/dynagui: Unmaintained, uses EOLed python27 2020-01-27 finance/mybudget: Unmaintained, uses EOLed python27 2020-01-27 finance/sabernetdcs-client: Unmaintained, uses EOLed python27 2020-01-27 games/4stattack: Unmaintained, uses EOLed python27 2020-01-27 games/barbie_seahorse_adventures: Unmaintained, uses EOLed python27 2020-01-27 games/battletanks: Unmaintained, uses EOLed python27 2020-01-27 games/bombz: Unmaintained, uses EOLed python27 2020-01-27 games/bouncy: Unmaintained, uses EOLed python27 2020-01-27 games/bubbros: Unmaintained, uses EOLed python27 2020-01-27 games/childsplay: Unmaintained, uses EOLed python27 2020-01-27 games/crossfire-server: Unmaintained, uses EOLed python27 2020-01-27 games/duckmaze: Unmaintained, uses EOLed python27 2020-01-27 games/farblazer: Unmaintained, uses EOLed python27 2020-01-27 games/gbottler: Unmaintained, uses EOLed python27 2020-01-27 games/glchess: Unmaintained, uses EOLed python27 2020-01-27 games/gretools: Unmaintained, uses EOLed python27 2020-01-27 games/kye: Unmaintained, uses EOLed python27 2020-01-27 games/liquidwar: Unmaintained, uses EOLed python27 2020-01-27 games/mopesnake: Unmaintained, uses EOLed python27 2020-01-27 games/nelly: Unmaintained, uses EOLed python27 2020-01-27 games/oneisenough: Unmaintained, uses EOLed python27 2020-01-27 games/ptkei: Unmaintained, uses EOLed python27 2020-01-27 games/py-poker-eval: Unmaintained, uses EOLed python27 2020-01-27 games/pycadia: Unmaintained, uses EOLed python27 2020-01-27 games/pydance: Unmaintained, uses EOLed python27 2020-01-27 games/pysycache: Unmaintained, uses EOLed python27 2020-01-27 games/pythonchess: Unmaintained, uses EOLed python27 2020-01-27 games/pytowerdefense: Unmaintained, uses EOLed python27 2020-01-27 games/rtb: Unmaintained, uses EOLed python27 2020-01-27 games/schiff: Unmaintained, uses EOLed python27 2020-01-27 games/schwarzweiss: Unmaintained, uses EOLed python27 2020-01-27 games/secrettower: Unmaintained, uses EOLed python27 2020-01-27 games/slune: Unmaintained, uses EOLed python27 2020-01-27 games/super_mario_bros_python: Unmaintained, uses EOLed python27 2020-01-27 games/tuxfighter: Unmaintained, uses EOLed python27 2020-01-27 games/twitch: Unmaintained, uses EOLed python27 2020-01-27 games/vegastrike: Unmaintained, uses EOLed python27 2020-01-27 games/zephulor: Unmaintained, uses EOLed python27 2020-01-27 graphics/boxer: Unmaintained, uses EOLed python27 2020-01-27 graphics/electrix: Unmaintained, uses EOLed python27 2020-01-27 graphics/exact-image: Unmaintained, uses EOLed python27 2020-01-27 graphics/gnofract4d: Unmaintained, uses EOLed python27 2020-01-27 graphics/gsculpt: Unmaintained, uses EOLed python27 2020-01-27 graphics/imgtops: Unmaintained, uses EOLed python27 2020-01-27 graphics/imgv: Unmaintained, uses EOLed python27 2020-01-27 graphics/lcms-python: Unmaintained, uses EOLed python27 2020-01-27 graphics/mirage: Unmaintained, uses EOLed python27 2020-01-27 graphics/partio: Unmaintained, uses EOLed python27 2020-01-27 graphics/py-exif: Unmaintained, uses EOLed python27 2020-01-27 graphics/py-gd: Unmaintained, uses EOLed python27 2020-01-27 graphics/py-paint: Unmaintained, uses EOLed python27 2020-01-27 graphics/pygts: Unmaintained, uses EOLed python27 2020-01-27 graphics/pysvg: Unmaintained, uses EOLed python27 2020-01-27 irc/py-supybot-plugins: Unmaintained, uses EOLed python27 2020-01-27 japanese/kana-no-quiz: Unmaintained, uses EOLed python27 2020-01-27 lang/py-prolog: Unmaintained, uses EOLed python27 2020-01-27 lang/sdcc: Unmaintained, uses EOLed python27 2020-01-27 mail/archivemail: Unmaintained, uses EOLed python27 2020-01-27 mail/mailfmt: Unmaintained, uses EOLed python27 2020-01-27 mail/py-libgmail: Unmaintained, uses EOLed python27 2020-01-27 mail/py-ppolicy: Unmaintained, uses EOLed python27 2020-01-27 mail/rss2email2: Unmaintained, uses EOLed python27 2020-01-27 mail/svnmailer: Unmaintained, uses EOLed python27 2020-01-27 math/biggles: Unmaintained, uses EOLed python27 2020-01-27 math/py-gato: Unmaintained, uses EOLed python27 2020-01-27 math/py-gnuplot: Unmaintained, uses EOLed python27 2020-01-27 math/py-mathdom: Unmaintained, uses EOLed python27 2020-01-27 math/py-probstat: Unmaintained, uses EOLed python27 2020-01-27 math/py-rpy: Unmaintained, uses EOLed python27 2020-01-27 misc/gnome-osd: Unmaintained, uses EOLed python27 2020-01-27 misc/gonvert: Unmaintained, uses EOLed python27 2020-01-27 misc/metalink-editor: Unmaintained, uses EOLed python27 2020-01-27 misc/py-YABT: Unmaintained, uses EOLed python27 2020-01-27 misc/xdg-menu: Unmaintained, uses EOLed python27 2020-01-27 multimedia/devede: Unmaintained, uses EOLed python27 2020-01-27 multimedia/gdvrecv: Unmaintained, uses EOLed python27 2020-01-27 multimedia/mmpython: Unmaintained, uses EOLed python27 2020-01-27 multimedia/pymp: Unmaintained, uses EOLed python27 2020-01-27 net/gtknetcat: Unmaintained, uses EOLed python27 2020-01-27 net/ntlmaps: Unmaintained, uses EOLed python27 2020-01-27 net/polyorb: Unmaintained, uses EOLed python27 2020-01-27 net/py-zsi: Unmaintained, uses EOLed python27 2020-01-27 net/pythondirector: Unmaintained, uses EOLed python27 2020-01-27 net/sippy_b2bua: Unmaintained, uses EOLed python27 2020-01-27 net-im/py-jabber: Unmaintained, uses EOLed python27 2020-01-27 net-im/py-jabberbot: Unmaintained, uses EOLed python27 2020-01-27 net-im/py-libturpial: Unmaintained, uses EOLed python27 2020-01-27 net-im/py-xmpppy-irc: Unmaintained, uses EOLed python27 2020-01-27 net-mgmt/pdagent-integrations: Unmaintained, uses EOLed python27 2020-01-27 net-p2p/tribler: Unmaintained, uses EOLed python27 2020-01-27 news/papercut: Unmaintained, uses EOLed python27 2020-01-27 print/pkipplib: Unmaintained, uses EOLed python27 2020-01-27 print/pkpgcounter: Unmaintained, uses EOLed python27 2020-01-27 print/ttfquery: Unmaintained, uses EOLed python27 2020-01-27 science/gwyddion: Unmaintained, uses EOLed python27 2020-01-27 science/psychopy: Unmaintained, uses EOLed python27 2020-01-27 science/py-hcluster: Unmaintained, uses EOLed python27 2020-01-27 science/py-pyteomics.biolccc: Unmaintained, uses EOLed python27 2020-01-27 science/pycdf: Unmaintained, uses EOLed python27 2020-01-27 security/blindelephant: Unmaintained, uses EOLed python27 2020-01-27 security/cfv: Unmaintained, uses EOLed python27 2020-01-27 security/fsh: Unmaintained, uses EOLed python27 2020-01-27 security/gcipher: Unmaintained, uses EOLed python27 Notes: svn path=/head/; revision=524263
* biology/py-pysam: Update 0.15.3 -> 0.15.4Yuri Victorovich2020-01-232-4/+4
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=523862
* math/openblas: Update to 0.3.7Steve Wills2020-01-211-1/+1
| | | | | | | | | | | While here, improve formatting and fix build of dependant ports. PR: 231371 Submitted by: yuri (initial version), pkubaj (ppc fixes) Approved by: Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp> (maintainer) Notes: svn path=/head/; revision=523749
* biology/gatk: Update 4.1.3.0 -> 4.1.4.1Yuri Victorovich2020-01-204-18/+18
| | | | Notes: svn path=/head/; revision=523602
* - Update WWWDmitry Marakasov2020-01-192-2/+2
| | | | Notes: svn path=/head/; revision=523524
* biology/abyss: Broken on i386Yuri Victorovich2020-01-181-0/+2
| | | | | | | Reported by: fallout Notes: svn path=/head/; revision=523491
* biology/muscle: unbreak in -CURRENTFernando Apesteguía2020-01-171-0/+3
| | | | | | | | | | Don't compile problematic (and unnecessary) file. PR: 243206 Submitted by: mzaki@e-mail.ne.jp (maintainer) Notes: svn path=/head/; revision=523339
* biology/ngs-sdk: Update 2.10.1 -> 2.10.2Yuri Victorovich2020-01-173-5/+5
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=523285
* biology/gemma: Unbreak buildJason W. Bacon2020-01-144-9/+44
| | | | | | | Conflict between cblas.h and gsl_cblas.h Notes: svn path=/head/; revision=523074
* devel/jsoncpp: Update 1.8.1 -> 1.9.2Yuri Victorovich2020-01-131-0/+1
| | | | | | | | PR: 229677 Differential Revision: D22905 Notes: svn path=/head/; revision=522975
* biology/muscle: update to 3.8.1551Fernando Apesteguía2020-01-135-48/+44
| | | | | | | | | | | | * Bug fix for long sequences. * Unbreak '/dev/tty' problem during a build * Update maintainer's mail address PR: 243206 Submitted by: mzaki@e-mail.ne.jp (maintainer) Notes: svn path=/head/; revision=522911
* biology/tRNAscan-SE: update to 2.0.5Fernando Apesteguía2020-01-132-7/+7
| | | | | | | | | | This commit also changes maintainer's email. PR: 243248 Submitted by: mzaki@e-mail.ne.jp (maintainer) Notes: svn path=/head/; revision=522898
* biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich2020-01-133-14/+8
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=522851
* biology/ngs-sdk: Update 2.10.0 -> 2.10.1Yuri Victorovich2020-01-123-5/+5
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=522744
* biology/py-macs2: Upgrade to 2.2.6Jason W. Bacon2020-01-112-14/+11
| | | | | | | | | | Bug fixes and performance improvements Now require python 3.6+ Reported by: portscout Notes: svn path=/head/; revision=522687
* Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over ↵Sunpoet Po-Chuan Hsieh2020-01-081-2/+0
| | | | | | | 3 years ago Notes: svn path=/head/; revision=522441
* Update to 1.7.5Sunpoet Po-Chuan Hsieh2020-01-083-8/+5
| | | | | | | Changes: https://metacpan.org/changes/distribution/Bio-Variation Notes: svn path=/head/; revision=522440
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2020-01-081-2/+3
| | | | | | | | | - Bump PORTREVISION for dependency change The circular dependency among p5-Bio-Cluster, p5-Bio-DB-NCBIHelper, p5-Bio-Variation and this port has been resolved in p5-Bio-Variation 1.7.5 update. Notes: svn path=/head/; revision=522439
* biology/viennarna: Update 2.4.13 -> 2.4.14Yuri Victorovich2020-01-063-5/+8
| | | | | | | Reported by: repology Notes: svn path=/head/; revision=522200
* biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich2020-01-052-7/+6
| | | | | | | Reported by: repology Notes: svn path=/head/; revision=522133
* Mark a few ports broken (unfetchable)Antoine Brodin2020-01-051-0/+1
| | | | Notes: svn path=/head/; revision=522132
generated by cgit v1.2.3 (git 2.25.1) at 2025-04-03 21:09:43 +0000