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* Distfile was moved and renamed.Mark Pulford2001-06-112-3/+3
| | | | | | | | PR: 28004 Submitted by: Jeff Palmer <scorpio@drkshdw.org> Notes: svn path=/head/; revision=43811
* Use proper POSIX syntax for `chown'.David E. O'Brien2001-06-011-1/+1
| | | | Notes: svn path=/head/; revision=43378
* Update to version 1.13.1Kevin Lo2001-05-305-42/+240
| | | | | | | | PR: 27768 Submitted by: MAINTAINER Notes: svn path=/head/; revision=43313
* math/numpy was renamed to math/py-numeric.Maxim Sobolev2001-05-291-1/+1
| | | | | | | | PR: 27594 Submitted by: Chang, Hye-Shik <perky@python.or.kr> Notes: svn path=/head/; revision=43243
* upgrade to 4.3.2Ying-Chieh Liao2001-05-2714-458/+389
| | | | | | | | PR: 27273 Submitted by: maintainer Notes: svn path=/head/; revision=43133
* Update the EMBOSS suite (biology/emboss) to version 1.12.0James E. Housley2001-05-073-138/+25
| | | | | | | | PR: 27179 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=42360
* Updata biology/fasta3 to version 33.t08.d4James E. Housley2001-05-073-8/+8
| | | | | | | | PR: 27176 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=42359
* Update distfile checksum (PORTREVISION bumped)Jimmy Olgeni2001-04-205-37/+14
| | | | | | | | | | | | | also: * Change maintainer's email address. * Remove support for older FreeBSD versions. PR: 26710 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Notes: svn path=/head/; revision=41716
* activate IGNOREFILES.FUJISHIMA Satsuki2001-04-131-0/+3
| | | | Notes: svn path=/head/; revision=41349
* Ignore checksum. The distfile changes day by day.FUJISHIMA Satsuki2001-04-131-1/+1
| | | | Notes: svn path=/head/; revision=41337
* This port require X libraries to build/run.Steve Price2001-04-111-0/+1
| | | | Notes: svn path=/head/; revision=41260
* Overhaul QT/KDE support:Will Andrews2001-04-031-2/+1
| | | | | | | | | | | | | | | | | | | | | - bsd.port.mk update to use bsd.kde.mk for USE_{QT,KDE}* - Cleanup corresponding ports for bsd.kde.mk update. - Fix bsd.kde.mk: use correct kdelibs dependency, put qt at the bottom, introduce QT_NONSTANDARD variable for nonstandard configure setup. - Update KDE2 to 2.1.1. Two patches included in x11/kdelibs2 to fix the proxy authentication that was broken for 2.1.1. Remove old patches. - Potentially fix kdelibs build for alpha. - Fix qt-designer 2.3.0 build. - Ruby stuff left alone since it looks like black magic to me. Should still work w/ compat shims for older USE_QT[,2] style. Some others were also left alone for the same reason. Reviewed by: portmgr, ports (bsd.kde.mk+bsd.port.mk) Submitted by: David Faure <faure@kde.org> (proxy auth patches) Alex Zepeda <garbanzo@kde.org> (old patches removal) Notes: svn path=/head/; revision=40792
* update to 3.03Michael Haro2001-04-024-27/+5
| | | | | | | | PR: 26094 Submitted by: maintainer Notes: svn path=/head/; revision=40710
* updated port biology/phylip from vers 3.5 to 3.6Michael Haro2001-04-025-94/+110
| | | | | | | | PR: 26146 Submitted by: "David A. Bader" <dbader@eece.unm.edu> Notes: svn path=/head/; revision=40709
* - Update MASTER_SITES and WWW: lineKevin Lo2001-03-314-32/+21
| | | | | | | | | | | | - Support CC/CFLAGS properly - Support install macros - Add PORTDOCS to pkg-plist PR: 26228 Submitted by: Ports Fury Notes: svn path=/head/; revision=40667
* Update to 33.t08.d3.Maxim Sobolev2001-03-223-4/+3
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=40193
* - Upgrade to version 1.70Kevin Lo2001-03-135-18/+41
| | | | | | | | | | - Update WWW PR: 25772 Submitted by: maintainer Notes: svn path=/head/; revision=39753
* Upgrade to 0.4.Jun Kuriyama2001-03-134-12/+12
| | | | | | | | Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer) PR: ports/25741 Notes: svn path=/head/; revision=39711
* o update to 2.7.2.FUJISHIMA Satsuki2001-03-122-5/+5
| | | | | | | | | | o pass maintainership to ports@. PR: 25685 Submitted by: maintainer Notes: svn path=/head/; revision=39686
* pass maintainership to ports@.FUJISHIMA Satsuki2001-03-121-1/+1
| | | | | | | | PR: 25685 Submitted by: maintainer Notes: svn path=/head/; revision=39684
* Update to lastest versionKevin Lo2001-03-122-2/+3
| | | | | | | | PR: 25726 Submitted by: maintainer Notes: svn path=/head/; revision=39652
* Update the EMBOSS suite to v1.11.0Neil Blakey-Milner2001-03-123-7/+12
| | | | | | | | PR: 25728 Submitted by: johann@egenetics.com Notes: svn path=/head/; revision=39639
* - A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner2001-03-122-1/+2
| | | | | | | | | | - Bumped PORTREVISION. Submitted by: Johann Visagie <johann@egenetics.com> PR: 25725 Notes: svn path=/head/; revision=39638
* Update to 0.85.Trevor Johnson2001-03-122-2/+2
| | | | Notes: svn path=/head/; revision=39628
* Force -O0 on the Alpha.Trevor Johnson2001-03-121-1/+7
| | | | | | | Submitted by: steve Notes: svn path=/head/; revision=39627
* fix WWW:FUJISHIMA Satsuki2001-03-091-1/+1
| | | | | | | | PR: 25625 Submitted by: maintainer Notes: svn path=/head/; revision=39302
* update to 33.t08.d2.FUJISHIMA Satsuki2001-03-082-2/+2
| | | | | | | | PR: 25609 Submitted by: maintainer Notes: svn path=/head/; revision=39262
* gd.2, not gd.1Ying-Chieh Liao2001-03-051-1/+1
| | | | | | | Submitted by: bento Notes: svn path=/head/; revision=39071
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.Peter Pentchev2001-03-042-3/+3
| | | | | | | | PR: 25422 Submitted by: Marc van Woerkom <marc.vanwoerkom@science-factory.com> Notes: svn path=/head/; revision=39046
* Remove do-configure section, use PERL_CONFIGURE now.Vanilla I. Shu2001-03-011-1/+0
| | | | Notes: svn path=/head/; revision=38917
* Update to version 1.10.1Kevin Lo2001-02-283-8/+7
| | | | | | | | PR: 25449 Submitted by: maintainer Notes: svn path=/head/; revision=38900
* reimport biology/genpakYing-Chieh Liao2001-02-288-0/+164
| | | | Notes: svn path=/head/; revision=38875
* module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao2001-02-288-163/+0
| | | | Notes: svn path=/head/; revision=38874
* add gpYing-Chieh Liao2001-02-278-0/+163
| | | | | | | GP is a set of small utilities to manipulate DNA sequences Notes: svn path=/head/; revision=38854
* Update to version 1.10.0Kevin Lo2001-02-205-24/+51
| | | | | | | | PR: 25228 Submitted by: MAINTAINER Notes: svn path=/head/; revision=38518
* The author (at my request) has gone back to a more FreeBSD-friendlyTrevor Johnson2001-02-192-2/+1
| | | | | | | way of naming the distfile. Change the port accordingly. Notes: svn path=/head/; revision=38494
* Update to 0.84.Trevor Johnson2001-02-193-15/+14
| | | | Notes: svn path=/head/; revision=38487
* Update to version 2001-02-06James E. Housley2001-02-192-2/+2
| | | | | | | | PR: 25200 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38477
* Chase graphics/gd's shlib version bump.Akinori MUSHA2001-02-121-1/+2
| | | | Notes: svn path=/head/; revision=38246
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-119-0/+204
| | | | | | | | | | | | protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38207
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley2001-02-118-0/+151
| | | | | | | | | | search tools PR: 24715 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38205
* add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki2001-02-1012-0/+822
| | | | | | | | PR: 23577 Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp> Notes: svn path=/head/; revision=38180
* Update to 0.84a. Generate the plist.Trevor Johnson2001-02-083-8/+10
| | | | Notes: svn path=/head/; revision=38124
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo2001-01-2910-77/+118
| | | | | | | | | | | - Update the EMBASSY package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one PR: 24717 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37757
* update from 3.7 to 3.8Ying-Chieh Liao2001-01-2418-167/+706
| | | | | | | | PR: 24371 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37545
* Upgrade to version 1.9.0Kevin Lo2001-01-246-13/+47
| | | | | | | | PR: 24597 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37536
* Massive style enforcement - use ^I instead of spaces for variables identation.Maxim Sobolev2001-01-161-2/+2
| | | | Notes: svn path=/head/; revision=37252
* Clean up inefficient perl invocations; use multiple REs in the same call.Will Andrews2001-01-071-2/+2
| | | | Notes: svn path=/head/; revision=36897
* Update to 1.2.6Kevin Lo2000-12-224-7/+25
| | | | | | | | PR: 23756 Submitted by: Ports Fury Notes: svn path=/head/; revision=36229
* Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko2000-12-181-1/+1
| | | | Notes: svn path=/head/; revision=36071
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