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* * Migrate to gfortran.Maho Nakata2007-01-161-5/+4
| | | | | | | | | | * Bump port revision. * fix build [1]. Submitted by: kris [1] Notes: svn path=/head/; revision=182485
* - update to use new bsd.gnustep.mkDirk Meyer2007-01-131-4/+3
| | | | | | | Approved by: gurkan@linuks.mine.nu Notes: svn path=/head/; revision=182275
* * Migrate to gfortran.Maho Nakata2007-01-122-2/+7
| | | | | | | * Bump port revision. Notes: svn path=/head/; revision=182197
* Using gfortran42 only. not using gcc42.Maho Nakata2007-01-121-3/+5
| | | | | | | Bump portrevision. Notes: svn path=/head/; revision=182137
* Using only gfortran42. not gcc42.Maho Nakata2007-01-122-6/+10
| | | | | | | Bump portrevision. Notes: svn path=/head/; revision=182136
* * Add dummy knob WANT_FORTRAN for future gfortranMaho Nakata2007-01-092-127/+147
| | | | | | | | migration. currently it is not buildable with gfrotran42. * Honor FC and FFLAGS. Notes: svn path=/head/; revision=181827
* migrated to gfortran.Maho Nakata2007-01-091-0/+3
| | | | Notes: svn path=/head/; revision=181823
* Migrated to gfortran.Maho Nakata2007-01-093-6/+13
| | | | Notes: svn path=/head/; revision=181822
* The BioCocoa framework provides developers with the opportunity to addDirk Meyer2006-12-305-0/+45
| | | | | | | | | | | | support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE, Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT files by writing only three lines of code. The framework is written in Cocoa (Objective-C). WWW: http://bioinformatics.org/biococoa/ Notes: svn path=/head/; revision=181036
* - Update to 1.0.1Martin Wilke2006-12-293-97/+98
| | | | | | | | | | | - Update MASTER_SITES - Pass maintainership to submitter PR: ports/107246 Submitted by: Fernan Aguero<fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=181012
* Update to v0.15Aaron Dalton2006-12-273-40/+40
| | | | Notes: svn path=/head/; revision=180879
* Reset tonymaher@optusnet.com.au due to maintainer-timeouts and no responseMark Linimon2006-12-265-5/+5
| | | | | | | | | to email. Hat: portmgr Notes: svn path=/head/; revision=180796
* - Update to 5.1.2Martin Wilke2006-12-2311-236/+308
| | | | | | | | | | - Update maintainer mail adresse PR: ports/107118 Submitted by: M. L. Dodson <bdodson@houston.rr.com> (maintainer) Notes: svn path=/head/; revision=180626
* - Update to 1.03Rong-En Fan2006-12-193-105/+42
| | | | | | | | | PR: ports/106300 Submitted by: chinsan Approved by: maintainer timeout (15 days) Notes: svn path=/head/; revision=180115
* Reset dbader@ece.unm.edu due to timeouts and no response to email.Mark Linimon2006-12-132-2/+2
| | | | | | | Hat: portmgr Notes: svn path=/head/; revision=179659
* Reset whitekid@gmail.com after timeouts and no response to email.Mark Linimon2006-12-131-1/+1
| | | | | | | Hat: portmgr Notes: svn path=/head/; revision=179658
* - Update to 2.1.3Gabor Kovesdan2006-12-104-33/+19
| | | | | | | | | | | - Fix fetching - Remove old patch and use MAKE_ARGS instead - portlint(1) and whitespace Approved by: erwin (mentor) Notes: svn path=/head/; revision=179374
* - DeprecateGabor Kovesdan2006-12-103-0/+9
| | | | | | | | | - Set EXPIRATION_DATE Approved by: erwin (mentor) Notes: svn path=/head/; revision=179373
* - Local/Tools/Resources now globalDirk Meyer2006-12-091-1/+0
| | | | Notes: svn path=/head/; revision=179271
* - Respect X11BASERong-En Fan2006-12-091-0/+5
| | | | | | | Approved by: portmgr (linimon) Notes: svn path=/head/; revision=179256
* - Update to 0.14Frank J. Laszlo2006-12-074-56/+48
| | | | | | | | Submitted by: Jin-Shan Tseng <tjs@cdpa.nsysu.edu.tw> Approved by: maintainer timeout (3 months) Notes: svn path=/head/; revision=179121
* - Mark broken on amd64 < 6. We got followingRong-En Fan2006-12-041-0/+4
| | | | | | | | | | | | | | | | | cc -O -pipe -fPIC -g -Wall -DACEDB4 -I. -I./wh -DFREEBSD -c -O -pipe -fPIC -g -Wall -DACEDB4 -c arraysub.c arraysub.c: In function `stackused': arraysub.c:54: error: unrecognizable insn: (insn 44 22 24 2 arraysub.c:53 (set (reg:SI 1 dx [66]) (subreg:SI (plus:DI (subreg:DI (reg:SI 7 sp) 0) (const_int -1 [0xffffffffffffffff])) 0)) -1 (nil) (nil)) arraysub.c:54: internal compiler error: in extract_insn, at recog.c:2083 Reported by: pointyhat via kris Approved by: Philip M. Gollucci (maintainer) Notes: svn path=/head/; revision=178800
* Correct path to Compress::Zlib.pm after recent p5-Compress-Zlib update.Dmitry Sivachenko2006-12-031-1/+1
| | | | Notes: svn path=/head/; revision=178677
* - Respect X11BASERong-En Fan2006-12-021-1/+1
| | | | | | | Approved by: maintainer (implicit) Notes: svn path=/head/; revision=178624
* - Use features of bsd.wx.mk, especially USE_WXPav Lucistnik2006-12-011-4/+2
| | | | | | | | PR: ports/101613 Submitted by: alepulver Notes: svn path=/head/; revision=178433
* - Respect X11BASEMartin Wilke2006-11-271-2/+2
| | | | | | | | PR: ports/105891 Submitted by: trasz Notes: svn path=/head/; revision=178134
* - Update to 1.91Rong-En Fan2006-11-273-38/+5
| | | | | | | | | | | - Unbreak on amd64 PR: ports/105414 Submitted by: rafan Approved by: maintainer timeout (15 days) Notes: svn path=/head/; revision=178088
* - Upgrade to the latest beta and unbreak;Thierry Thomas2006-11-214-230/+274
| | | | | | | | | | | | - Add a regression-test target; - Fix plist for WITHOUT_SAMPLES. PR: ports/104685 Approved by: maintainer's time-out (1 month) Notes: svn path=/head/; revision=177766
* - cleanup patchesDirk Meyer2006-11-121-3/+0
| | | | Notes: svn path=/head/; revision=177110
* - fix build on non i386 archsDirk Meyer2006-11-101-2/+2
| | | | | | | Submitted by: Gürkan Sengün Notes: svn path=/head/; revision=177002
* Adun is a new extendible molecular simulation program that alsoDirk Meyer2006-11-0910-0/+607
| | | | | | | | | | | includes data management and analysis capabilities. WWW: http://diana.imim.es/Adun Submitted by: Gürkan Sengün Reviewed by: dinoex Notes: svn path=/head/; revision=176957
* - Update to 1.42Martin Wilke2006-10-313-121/+90
| | | | | | | | | PR: ports/104635 Submitted by: Thomas Abthorpe <thomas@goodking.ca> Approved by: maintainer Notes: svn path=/head/; revision=175802
* - Update to 34.t26.b3Martin Wilke2006-10-313-4/+7
| | | | | | | | PR: ports/104508 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=175755
* Distfile now checksums successfully.Sam Lawrance2006-10-141-4/+0
| | | | | | | | | PR: ports/104341 Submitted by: Frank J. Laszlo <laszlof@vonostingroup.com> Approved by: portmgr (marcus) Notes: svn path=/head/; revision=175301
* Chase the GNOME X11BASE to LOCALBASE move, and fix the build with theJoe Marcus Clarke2006-10-142-5/+7
| | | | | | | | | | new freetype2 where needed. Submitted by: mezz, ahze, pav, and many others Approved by: portmgr (implicit, kris) Notes: svn path=/head/; revision=175261
* - Add hmmer 5.09 applicationPav Lucistnik2006-10-104-10/+38
| | | | Notes: svn path=/head/; revision=175196
* Chase pdf library and bump PORTREVISION.Alex Dupre2006-10-091-1/+2
| | | | Notes: svn path=/head/; revision=175052
* - Allow wxWidgets 2.6 alongside 2.4, this port works with bothPav Lucistnik2006-10-091-4/+3
| | | | | | | | PR: ports/102168 Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=175040
* - Update to 0.98dCheng-Lung Sung2006-10-062-4/+4
| | | | | | | | | PR: ports/103408 Submitted by: chinsan Approved by: maintainer (timeout) Notes: svn path=/head/; revision=174628
* Add gmap 2006.04.21, a Genomic Mapping and Alignment Program for mRNACheng-Lung Sung2006-09-298-0/+105
| | | | | | | | | | and EST Sequences. PR: ports/103651 Submitted by: Bob Zimmermann <rpz at cse.wustl.edu> Notes: svn path=/head/; revision=174086
* Unbreak: molden has been updated on Aug 17, with the same DISTNAME.Thierry Thomas2006-09-174-23/+35
| | | | | | | Changelog at <http://www.cmbi.ru.nl/molden/HISTORY>. Notes: svn path=/head/; revision=173242
* Fix build on amd64Maho Nakata2006-09-172-4/+4
| | | | | | | Submitted by: kris Notes: svn path=/head/; revision=173233
* BROKEN on amd64 and ia64: Does not buildKris Kennaway2006-09-171-0/+4
| | | | Notes: svn path=/head/; revision=173183
* BROKEN: Size mismatch. Since this is unmaintained, deprecate and scheduleKris Kennaway2006-09-041-0/+4
| | | | | | | for termination on 2006-12-01 Notes: svn path=/head/; revision=172186
* NO_CDROM and NO_PACKAGE are not appropriate hereKris Kennaway2006-09-031-3/+1
| | | | Notes: svn path=/head/; revision=171967
* Schedule these broken ports for termination on 2006-12-01Kris Kennaway2006-09-022-0/+4
| | | | Notes: svn path=/head/; revision=171889
* Folding@Home is a distributed computing project -- people from through out thePav Lucistnik2006-08-285-0/+61
| | | | | | | | | | | | | | | | | world download and run software to band together to make one of the largest supercomputers in the world. Every computer makes the project closer to our goals. Folding@Home uses novel computational methods coupled to distributed computing, to simulate problems thousands to millions of times more challenging than previously achieved. WWW: http://folding.standford.edu PR: ports/101235 Submitted by: Yonatan <onatan@gmail.com> Notes: svn path=/head/; revision=171590
* - s,INSTALLS_SHLIB,USE_LDCONFIG,gCheng-Lung Sung2006-08-141-1/+1
| | | | | | | | | | - these include astro/ audio/ biology/ chinese/ maintained by ports@ PR: ports/101916 Submitted by: Gea-Suan Lin <gslin_AT_gslin dot org> Notes: svn path=/head/; revision=170572
* Mark as broken for i386 4.xEdwin Groothuis2006-08-101-1/+7
| | | | | | | | PR: ports/101789 Submitted by: Scott Flatman <sf@slappy.org> Notes: svn path=/head/; revision=170319
* Unmark BROKEN, it seems to be caused by a stale distfile on ftp-master.Erwin Lansing2006-08-031-2/+0
| | | | Notes: svn path=/head/; revision=169590
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