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* Update distfile checksum (PORTREVISION bumped)Jimmy Olgeni2001-04-205-37/+14
| | | | | | | | | | | | | also: * Change maintainer's email address. * Remove support for older FreeBSD versions. PR: 26710 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov> Notes: svn path=/head/; revision=41716
* activate IGNOREFILES.FUJISHIMA Satsuki2001-04-131-0/+3
| | | | Notes: svn path=/head/; revision=41349
* Ignore checksum. The distfile changes day by day.FUJISHIMA Satsuki2001-04-131-1/+1
| | | | Notes: svn path=/head/; revision=41337
* This port require X libraries to build/run.Steve Price2001-04-111-0/+1
| | | | Notes: svn path=/head/; revision=41260
* Overhaul QT/KDE support:Will Andrews2001-04-031-2/+1
| | | | | | | | | | | | | | | | | | | | | - bsd.port.mk update to use bsd.kde.mk for USE_{QT,KDE}* - Cleanup corresponding ports for bsd.kde.mk update. - Fix bsd.kde.mk: use correct kdelibs dependency, put qt at the bottom, introduce QT_NONSTANDARD variable for nonstandard configure setup. - Update KDE2 to 2.1.1. Two patches included in x11/kdelibs2 to fix the proxy authentication that was broken for 2.1.1. Remove old patches. - Potentially fix kdelibs build for alpha. - Fix qt-designer 2.3.0 build. - Ruby stuff left alone since it looks like black magic to me. Should still work w/ compat shims for older USE_QT[,2] style. Some others were also left alone for the same reason. Reviewed by: portmgr, ports (bsd.kde.mk+bsd.port.mk) Submitted by: David Faure <faure@kde.org> (proxy auth patches) Alex Zepeda <garbanzo@kde.org> (old patches removal) Notes: svn path=/head/; revision=40792
* update to 3.03Michael Haro2001-04-024-27/+5
| | | | | | | | PR: 26094 Submitted by: maintainer Notes: svn path=/head/; revision=40710
* updated port biology/phylip from vers 3.5 to 3.6Michael Haro2001-04-025-94/+110
| | | | | | | | PR: 26146 Submitted by: "David A. Bader" <dbader@eece.unm.edu> Notes: svn path=/head/; revision=40709
* - Update MASTER_SITES and WWW: lineKevin Lo2001-03-314-32/+21
| | | | | | | | | | | | - Support CC/CFLAGS properly - Support install macros - Add PORTDOCS to pkg-plist PR: 26228 Submitted by: Ports Fury Notes: svn path=/head/; revision=40667
* Update to 33.t08.d3.Maxim Sobolev2001-03-223-4/+3
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=40193
* - Upgrade to version 1.70Kevin Lo2001-03-135-18/+41
| | | | | | | | | | - Update WWW PR: 25772 Submitted by: maintainer Notes: svn path=/head/; revision=39753
* Upgrade to 0.4.Jun Kuriyama2001-03-134-12/+12
| | | | | | | | Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp> (maintainer) PR: ports/25741 Notes: svn path=/head/; revision=39711
* o update to 2.7.2.FUJISHIMA Satsuki2001-03-122-5/+5
| | | | | | | | | | o pass maintainership to ports@. PR: 25685 Submitted by: maintainer Notes: svn path=/head/; revision=39686
* pass maintainership to ports@.FUJISHIMA Satsuki2001-03-121-1/+1
| | | | | | | | PR: 25685 Submitted by: maintainer Notes: svn path=/head/; revision=39684
* Update to lastest versionKevin Lo2001-03-122-2/+3
| | | | | | | | PR: 25726 Submitted by: maintainer Notes: svn path=/head/; revision=39652
* Update the EMBOSS suite to v1.11.0Neil Blakey-Milner2001-03-123-7/+12
| | | | | | | | PR: 25728 Submitted by: johann@egenetics.com Notes: svn path=/head/; revision=39639
* - A small bugfix lead to a rerelease without a version number change.Neil Blakey-Milner2001-03-122-1/+2
| | | | | | | | | | - Bumped PORTREVISION. Submitted by: Johann Visagie <johann@egenetics.com> PR: 25725 Notes: svn path=/head/; revision=39638
* Update to 0.85.Trevor Johnson2001-03-122-2/+2
| | | | Notes: svn path=/head/; revision=39628
* Force -O0 on the Alpha.Trevor Johnson2001-03-121-1/+7
| | | | | | | Submitted by: steve Notes: svn path=/head/; revision=39627
* fix WWW:FUJISHIMA Satsuki2001-03-091-1/+1
| | | | | | | | PR: 25625 Submitted by: maintainer Notes: svn path=/head/; revision=39302
* update to 33.t08.d2.FUJISHIMA Satsuki2001-03-082-2/+2
| | | | | | | | PR: 25609 Submitted by: maintainer Notes: svn path=/head/; revision=39262
* gd.2, not gd.1Ying-Chieh Liao2001-03-051-1/+1
| | | | | | | Submitted by: bento Notes: svn path=/head/; revision=39071
* Change MASTER_SITE and FTP/WWW lines: caos.kun.nl is cmbi.kun.nl now.Peter Pentchev2001-03-042-3/+3
| | | | | | | | PR: 25422 Submitted by: Marc van Woerkom <marc.vanwoerkom@science-factory.com> Notes: svn path=/head/; revision=39046
* Remove do-configure section, use PERL_CONFIGURE now.Vanilla I. Shu2001-03-011-1/+0
| | | | Notes: svn path=/head/; revision=38917
* Update to version 1.10.1Kevin Lo2001-02-283-8/+7
| | | | | | | | PR: 25449 Submitted by: maintainer Notes: svn path=/head/; revision=38900
* reimport biology/genpakYing-Chieh Liao2001-02-288-0/+164
| | | | Notes: svn path=/head/; revision=38875
* module name conflict with print/gp, so remove it and I'll reimport it againYing-Chieh Liao2001-02-288-163/+0
| | | | Notes: svn path=/head/; revision=38874
* add gpYing-Chieh Liao2001-02-278-0/+163
| | | | | | | GP is a set of small utilities to manipulate DNA sequences Notes: svn path=/head/; revision=38854
* Update to version 1.10.0Kevin Lo2001-02-205-24/+51
| | | | | | | | PR: 25228 Submitted by: MAINTAINER Notes: svn path=/head/; revision=38518
* The author (at my request) has gone back to a more FreeBSD-friendlyTrevor Johnson2001-02-192-2/+1
| | | | | | | way of naming the distfile. Change the port accordingly. Notes: svn path=/head/; revision=38494
* Update to 0.84.Trevor Johnson2001-02-193-15/+14
| | | | Notes: svn path=/head/; revision=38487
* Update to version 2001-02-06James E. Housley2001-02-192-2/+2
| | | | | | | | PR: 25200 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38477
* Chase graphics/gd's shlib version bump.Akinori MUSHA2001-02-121-1/+2
| | | | Notes: svn path=/head/; revision=38246
* - New port: biology/fasta3, which comprises the FASTA3 suite of DNA andJames E. Housley2001-02-119-0/+204
| | | | | | | | | | | | protein sequence search programs - FASTA3 updates only some of the elements of FASTA2, which is why I have submitted ports of both versions (as biology/fasta and biology/fasta3) PR: 24716 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38207
* New port: biology/fasta, the FASTA2 suite of DNA and protein sequenceJames E. Housley2001-02-118-0/+151
| | | | | | | | | | search tools PR: 24715 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=38205
* add gaussian98, an ab-initio molecular orbital calculation program.FUJISHIMA Satsuki2001-02-1012-0/+822
| | | | | | | | PR: 23577 Submitted by: NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp> Notes: svn path=/head/; revision=38180
* Update to 0.84a. Generate the plist.Trevor Johnson2001-02-083-8/+10
| | | | Notes: svn path=/head/; revision=38124
* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1Kevin Lo2001-01-2910-77/+118
| | | | | | | | | | | - Update the EMBASSY package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one PR: 24717 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37757
* update from 3.7 to 3.8Ying-Chieh Liao2001-01-2418-167/+706
| | | | | | | | PR: 24371 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37545
* Upgrade to version 1.9.0Kevin Lo2001-01-246-13/+47
| | | | | | | | PR: 24597 Submitted by: MAINTAINER Notes: svn path=/head/; revision=37536
* Massive style enforcement - use ^I instead of spaces for variables identation.Maxim Sobolev2001-01-161-2/+2
| | | | Notes: svn path=/head/; revision=37252
* Clean up inefficient perl invocations; use multiple REs in the same call.Will Andrews2001-01-071-2/+2
| | | | Notes: svn path=/head/; revision=36897
* Update to 1.2.6Kevin Lo2000-12-224-7/+25
| | | | | | | | PR: 23756 Submitted by: Ports Fury Notes: svn path=/head/; revision=36229
* Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko2000-12-181-1/+1
| | | | Notes: svn path=/head/; revision=36071
* Update to version 5.79.Steve Price2000-12-113-26/+42
| | | | | | | | PR: 23345 Submitted by: Jeremy Shaffner <jeremy@external.org> Notes: svn path=/head/; revision=35877
* Update distfiles' checksums after the distfiles have been rerolled yetPeter Pentchev2000-12-042-4/+5
| | | | | | | | | | again without changing names or versions. Also add a new MASTER_SITE. PR: 23262 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35651
* Distfile tarballs were rerolled without notice due to a minor bug.Peter Pentchev2000-11-301-4/+4
| | | | | | | | PR: 23193 Submitted by: Johann Visagie <johann@egenetics.com> Notes: svn path=/head/; revision=35565
* - Update port biology/emboss from 1.7.0 to 1.8.0James E. Housley2000-11-284-17/+124
| | | | | | | | PR: 23130 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35477
* Make nolonger support :U. Fix to compensate for that.James E. Housley2000-11-191-3/+6
| | | | | | | | Submitted by: fenner Approved by: MAINTAINER Notes: svn path=/head/; revision=35251
* They made changes to the "blast" program.James E. Housley2000-11-152-2/+3
| | | | | | | Submitted by: MAINTAINER Notes: svn path=/head/; revision=35154
* - This is a fairly extensive rework of this port.James E. Housley2000-11-133-0/+56
| | | | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER Notes: svn path=/head/; revision=35081
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