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* biology/lsysexp is not brokenEdwin Groothuis2004-08-181-3/+5
| | | | | | | | | | fix gtk build error PR: ports/70598 Submitted by: David Yeske <dyeske@yahoo.com> Notes: svn path=/head/; revision=116555
* This is now buildable on 5.x, remove BROKEN.Kris Kennaway2004-08-171-7/+1
| | | | Notes: svn path=/head/; revision=116499
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allMathieu Arnold2004-08-121-1/+3
| | | | | | | | these ports were broken because they always depended on it. I've rearranged all the dependencies to fit the new scheme. Notes: svn path=/head/; revision=116026
* - Update to 5.2Pav Lucistnik2004-07-302-3/+13
| | | | | | | | PR: ports/69799 Submitted by: Jan Lentfer <Jan.Lentfer@web.de> (maintainer) Notes: svn path=/head/; revision=115120
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,Eric Anholt2004-07-231-6/+3
| | | | | | | make the BROKEN message a little more informative. Notes: svn path=/head/; revision=114521
* Update to version 2.7.2.1.1Kirill Ponomarev2004-07-095-42/+35
| | | | | | | | PR: ports/68861 Submitted by: Ports Fury Notes: svn path=/head/; revision=113300
* Apply a big libtool patch to allow porters to use the libtool installed byJoe Marcus Clarke2004-07-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | the libtoolX ports instead of the one included with each port. Ports that set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of the included version. To restore previous behavior, use the new macro, USE_INC_LIBTOOL_VER. Both macros accept the same argument: a libtool version. For example, to use the ports version of libtool-1.5, add the following to your Makefile: USE_LIBTOOL_VER= 15 To use the included version of libtool with extra hacks provided by libtool-1.5, add the following to your Makefile: USE_INC_LIBTOOL_VER= 15 With this change, ports that had to add additional libtool hacks to prevent .la files from being installed or to fix certain threading issues can now delete those hacks (after appropriate testing, of course). PR: 63944 Based on work by:eik and marcus Approved by: ade (autotools maintainer) Tested by: kris on pointyhat Bound to be hidden problems: You bet Notes: svn path=/head/; revision=113296
* Fix distsiteVolker Stolz2004-07-061-2/+1
| | | | | | | | | PR: ports/67473 Submitted by: Roman Neuhauser Approved by: maintainer timeout Notes: svn path=/head/; revision=113066
* BROKEN: Checksum mismatchKris Kennaway2004-07-031-0/+2
| | | | Notes: svn path=/head/; revision=112843
* Update to 4.6Volker Stolz2004-07-027-51/+58
| | | | | | | | PR: ports/68561 Submitted by: maintainer Notes: svn path=/head/; revision=112767
* BROKEN: Does not buildKris Kennaway2004-07-021-0/+2
| | | | Notes: svn path=/head/; revision=112742
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3Mark Linimon2004-07-014-9/+11
| | | | | | | | | | | and pacify portlint. PR: ports/67428 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (one month) Notes: svn path=/head/; revision=112643
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of aMark Linimon2004-07-012-8/+4
| | | | | | | | | | | | logfile, one Linux-only change, and one change in a test script). Assign submitter as new maintainer as current one has not responded to PRs for some time. PR: ports/68199 Submitted by: Fernan Aguero <fernan at iib dot unsam dot edu dot ar> Notes: svn path=/head/; revision=112639
* Update to 1.7.6.1.Mark Linimon2004-06-304-11/+43
| | | | | | | | | PR: ports/67429 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (4 weeks) Notes: svn path=/head/; revision=112588
* Drop maintainershipMario Sergio Fujikawa Ferreira2004-06-241-1/+1
| | | | Notes: svn path=/head/; revision=112138
* Fix MASTER_SITES:Volker Stolz2004-06-231-2/+2
| | | | | | | | | | | | - add trailing slash - ftp.ebi.ac.uk only has 2.8.0 PR: ports/67427 Submitted by: Roman Neuhauser Approved by: maintainer timeout Notes: svn path=/head/; revision=112027
* Add ariadne 1.3, programs to compare protein sequences andKirill Ponomarev2004-06-225-0/+60
| | | | | | | | | | profiles, using the Smith-Waterman algorithm. PR: ports/67811 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Notes: svn path=/head/; revision=111985
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENKris Kennaway2004-06-212-1/+5
| | | | | | | | ports. They will be removed on or after that date if they are still broken and no fix has been submitted to GNATS. Notes: svn path=/head/; revision=111956
* BROKEN: Checksum mismatchKris Kennaway2004-06-201-0/+2
| | | | Notes: svn path=/head/; revision=111846
* Replace explicit imake dependency with USE_IMAKE=yesEric Anholt2004-06-181-5/+1
| | | | Notes: svn path=/head/; revision=111699
* Update to 20040613 releaseMario Sergio Fujikawa Ferreira2004-06-132-3/+3
| | | | Notes: svn path=/head/; revision=111398
* - Remove obsolete MASTER_SITESKirill Ponomarev2004-06-081-2/+1
| | | | | | | | PR: ports/67690 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=111062
* - Update MASTER_SITESPav Lucistnik2004-06-021-3/+3
| | | | | | | | PR: ports/67472 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=110637
* [PATCH] biology/mopac patchsite fixEdwin Groothuis2004-06-011-1/+1
| | | | | | | | | | | | | | | this is a followup to ports/67432 I completely overlooked the fact that the port was setting PATCH_SITES, here's a fix for that maintainer cc'd PR: ports/67441 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=110584
* [PATCH] biology/mopac distsite fixEdwin Groothuis2004-06-011-1/+1
| | | | | | | | | | connection refused (portsurvey reports timeouts) PR: ports/67432 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=110575
* [PATCH] biology/gff2ps distsite fixEdwin Groothuis2004-06-011-3/+3
| | | | | | | | | | couple distfiles with their respective urls to reduce time and traffic PR: ports/67430 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=110573
* - Update WWWPav Lucistnik2004-05-291-1/+1
| | | | Notes: svn path=/head/; revision=110332
* - Fix MASTER_SITESKirill Ponomarev2004-05-231-4/+1
| | | | | | | | PR: ports/67045 Submitted by: Stefan Walter <sw@gegenunendlich.de> Notes: svn path=/head/; revision=109752
* - Remove long time unresponsive MASTER_SITEPav Lucistnik2004-05-221-1/+0
| | | | | | | | PR: ports/67016 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=109707
* - Update MASTER_SITES and WWW: lineKirill Ponomarev2004-05-222-2/+2
| | | | | | | | PR: ports/67015 Submitted by: Roman Neuhauser <neuhauser@chello.cz> Notes: svn path=/head/; revision=109685
* Add forgotten patches...Thierry Thomas2004-05-214-2/+62
| | | | Notes: svn path=/head/; revision=109634
* BROKEN: Broken pkg-plistKris Kennaway2004-05-211-0/+2
| | | | Notes: svn path=/head/; revision=109576
* unbreak, only minor changes in the distfiles (see PR)Oliver Eikemeier2004-05-182-8/+7
| | | | | | | | | | | Since the distfile has no version number, put it in DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} PR: 66817 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer) Notes: svn path=/head/; revision=109452
* Add a missing BUILD_DEPENDS.Thierry Thomas2004-05-111-0/+1
| | | | | | | Reported by: Kris. Notes: svn path=/head/; revision=108887
* Upgrade to 2.0b7 and unbreak.Thierry Thomas2004-05-107-113/+128
| | | | Notes: svn path=/head/; revision=108868
* Fix MASTER_SITESMarkus Brueffer2004-05-091-1/+1
| | | | Notes: svn path=/head/; revision=108723
* Make portlint happy by replacing space to tabMaho Nakata2004-05-062-4/+4
| | | | | | | | PR: 65409 Submitted by: trevor Notes: svn path=/head/; revision=108577
* - update to 4.5.3Pete Fritchman2004-05-026-17/+235
| | | | | | | | | | - remove version from pkg-descr PR: 65972 Submitted by: maintainer Notes: svn path=/head/; revision=108131
* - Honor CFLAGSKirill Ponomarev2004-04-161-1/+1
| | | | | | | | PR: ports/65599 Submitted by: michael johnson <ahze at ahze dot net> Notes: svn path=/head/; revision=107203
* BROKEN: Checksum mismatchKris Kennaway2004-04-121-0/+2
| | | | Notes: svn path=/head/; revision=106773
* Mark this port BROKEN with gtk+-2.4.Joe Marcus Clarke2004-04-111-0/+2
| | | | | | | Reported by: bento via kris Notes: svn path=/head/; revision=106710
* Tidy up whitespace.Trevor Johnson2004-04-102-6/+6
| | | | Notes: svn path=/head/; revision=106671
* Trim whitespace.Trevor Johnson2004-04-102-66/+66
| | | | Notes: svn path=/head/; revision=106662
* Add openbabel dependency (bento log forwarded by kris).Trevor Johnson2004-04-091-0/+2
| | | | Notes: svn path=/head/; revision=106524
* Update to 1.7.8.Trevor Johnson2004-04-073-16/+16
| | | | Notes: svn path=/head/; revision=106438
* After patching, remove the carriage-return characters from povchem.cTrevor Johnson2004-04-071-0/+2
| | | | | | | | | because they because they choke GCC 2.95.4. noticed by: kris Notes: svn path=/head/; revision=106426
* Chase home page.Trevor Johnson2004-04-071-1/+1
| | | | Notes: svn path=/head/; revision=106420
* Fix build with gtk 2.4.Adam Weinberger2004-04-051-1/+6
| | | | Notes: svn path=/head/; revision=106233
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.Joe Marcus Clarke2004-04-054-3/+4
| | | | Notes: svn path=/head/; revision=106175
* Remove category pkg/COMMENT files in favour of a COMMENT variable in theKris Kennaway2004-04-022-1/+2
| | | | | | | | | | category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651 Notes: svn path=/head/; revision=105948
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