aboutsummaryrefslogtreecommitdiff
path: root/math/rpy2
Commit message (Collapse)AuthorAgeFilesLines
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-101-1/+1
| | | | | | | version 1.1.0 (via revision 464079). Notes: svn path=/head/; revision=464084
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-301-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Ports using USE_PYTHON=distutils are now flavored. They will automatically get flavors (py27, py34, py35, py36) depending on what versions they support. There is also a USE_PYTHON=flavors for ports that do not use distutils but need FLAVORS to be set. A USE_PYTHON=noflavors can be set if using distutils but flavors are not wanted. A new USE_PYTHON=optsuffix that will add PYTHON_PKGNAMESUFFIX has been added to cope with Python ports that did not have the Python PKGNAMEPREFIX but are flavored. USES=python now also exports a PY_FLAVOR variable that contains the current python flavor. It can be used in dependency lines when the port itself is not python flavored. For example, deskutils/calibre. By default, all the flavors are generated. To only generate flavors for the versions in PYTHON2_DEFAULT and PYTHON3_DEFAULT, define BUILD_DEFAULT_PYTHON_FLAVORS in your make.conf. In all the ports with Python dependencies, the *_DEPENDS entries MUST end with the flavor so that the framework knows which to build/use. This is done by appending '@${PY_FLAVOR}' after the origin (or @${FLAVOR} if in a Python module with Python flavors, as the content will be the same). For example: RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} PR: 223071 Reviewed by: portmgr, python Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D12464 Notes: svn path=/head/; revision=455210
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-101-1/+1
| | | | | | | | | | | | | | | | | (via Mk/bsd.default-versions.mk and lang/gcc) which has moved from GCC 5.4 to GCC 6.4 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++11-lang, c++14-lang, c++0x, c11, or gcc-c++11-lib. PR: 219275 Notes: svn path=/head/; revision=449591
* After r446199 libR.so has SONAME and was made visible forPawel Pekala2017-07-241-4/+3
| | | | | | | | | | | | | | | consumer ports. Register correct dependency by using LIB_DEPENDS instead of BUILD|RUN_DEPENDS dance. math/rkward-kde4: - Add 2 missing files to pkg-plist also PR: 219776 Submitted by: myself Approved by: maintainers timeouts Notes: svn path=/head/; revision=446540
* Update devel/readline to 7.0 patch 3Sunpoet Po-Chuan Hsieh2017-06-271-1/+1
| | | | | | | | | | | | | | - Bump PORTREVISION for shlib change Changes: https://cnswww.cns.cwru.edu/php/chet/readline/CHANGES https://lists.gnu.org/archive/html/bug-bash/2016-09/msg00107.html https://lists.gnu.org/archive/html/bug-readline/2017-01/msg00002.html Differential Revision: https://reviews.freebsd.org/D11172 PR: 219947 Exp-run by: antoine Notes: svn path=/head/; revision=444463
* Bump PORTREVISIONs for ports depending on the canonical version of GCC andGerald Pfeifer2017-04-011-1/+1
| | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some circumstances such as versions of FreeBSD or platforms). This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using using Mk/bsd.octave.mk which in turn has USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang, c++11-lang, c++0x, c11, or gcc-c++11-lib. PR: 216707 Notes: svn path=/head/; revision=437439
* Bump PORTREVISIONS for ports depending on the canonical version of GCC andGerald Pfeifer2016-12-071-1/+1
| | | | | | | | | | | | | | | | | | lang/gcc which have moved from GCC 4.8.5 to GCC 4.9.4 (at least under some circumstances such as versions of FreeBSD or platforms), part II. The first part covered ports with USE_GCC=yes, USE_GCC=any, or one of gcc-c++11-lib, openmp, nestedfct, c++11-lib as well as c++14-lang, c++11-lang, c++0x, c11 requested via USES=compiler. This adds ports with USES=fortran and ports using Mk/bsd.octave.mk which in turn has USES=fortran. PR: 214965 Reported by: thierry Notes: svn path=/head/; revision=428057
* math/rpy2: stop linking against math/R dependsJan Beich2016-11-111-3/+3
| | | | | | | | | | While here, switch back to Clang build but keep RPATH which is a quirk to avoid loading /usr/lib/libgcc_s.so during dlopen() race. PR: 214384 Notes: svn path=/head/; revision=425889
* - Update devel/icu to 57.1.Tijl Coosemans2016-09-241-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | - Clean up the Makefile. - Follow some upstream recommendations (--with-data-packaging=archive, --disable-renaming, -DICU_NO_USER_DATA_OVERRIDE). - Patch makefiles to install static libraries with INSTALL_DATA so they aren't stripped. - Patch config/mh-bsd-gcc to sync with config/mh-linux-gcc. - Fix endianness detection in ICU. The code wanted to use BYTE_ORDER defined in machine/endian.h, but this isn't visible because ICU is compiled with _XOPEN_SOURCE. Patch the code to use _BYTE_ORDER instead. - Compile ICU with C++11 compiler to enable move constructors. - Patch ICU to fix a problem with atomics in the case of a C++11 compiler without C++11 header <atomic> (like Clang on FreeBSD 9). - Bump all ports that depend on it due to library version change. - Add USES=compiler:c++0x to some ports that pick up -std=c++0x from ICU pkgconfig files. - Add USES=compiler:c++11-lib to graphics/libcdr01 because it also needs a C++11 runtime library now. Add this to all ports that depend on it so their executables load the right libstdc++.so on FreeBSD 9. PR: 205120 Exp-run by: antoine Approved by: portmgr (antoine) Notes: svn path=/head/; revision=422711
* - Fix trailing whitespace in pkg-descrs, categories [g-n]*Dmitry Marakasov2016-05-191-1/+1
| | | | | | | Approved by: portmgr blanket Notes: svn path=/head/; revision=415499
* Remove ${PORTSDIR}/ from dependencies, categories m, n, o, and p.Mathieu Arnold2016-04-011-2/+2
| | | | | | | | With hat: portmgr Sponsored by: Absolight Notes: svn path=/head/; revision=412348
* Update to 2.7.8Mathieu Arnold2016-03-073-10/+8
| | | | | | | | | PR: 207163 Submitted by: tkato432 yahoo com Sponsored by: Absolight Notes: svn path=/head/; revision=410532
* - Strip librariesDmitry Marakasov2015-06-031-1/+4
| | | | Notes: svn path=/head/; revision=388444
* Canonicalize some dependencies on numpyAntoine Brodin2015-01-231-2/+2
| | | | Notes: svn path=/head/; revision=377743
* - Convert ports of math/ to new USES=pythonMarcus von Appen2014-10-211-4/+2
| | | | | | | Approved by: portmgr (implicit) Notes: svn path=/head/; revision=371328
* Update the default version of GCC in the Ports Collection from GCC 4.7.4Gerald Pfeifer2014-09-101-0/+1
| | | | | | | | | | | | | to GCC 4.8.3. Part II, Bump PORTREVISIONs. PR: 192025 Tested by: antoine (-exp runs) Approved by: portmgr (implicit) Notes: svn path=/head/; revision=367888
* Add USES=readline to fix build on -current.Adam Weinberger2014-07-231-0/+1
| | | | Notes: svn path=/head/; revision=362689
* - Stage support [1]Wen Heping2014-05-313-199/+7
| | | | | | | | | | | - Update to 2.4.0 [1] - Reset maintainer to ports@ PR: 190365 [1] Submitted by: Muhammad Moinur Rahman <5u623l20@gmail.com> [1] Notes: svn path=/head/; revision=355936
* Update the default version of GCC used in the Ports Collection fromGerald Pfeifer2014-03-101-1/+1
| | | | | | | | | | | | | | GCC 4.6.4 to GCC 4.7.3. This entails updating the lang/gcc port as well as changing the default in Mk/bsd.default-versions.mk. Part II, Bump PORTREVISIONs. PR: 182136 Supported by: Christoph Moench-Tegeder <cmt@burggraben.net> (fixing many ports) Tested by: bdrewery (two -exp runs) Notes: svn path=/head/; revision=347809
* Update math/R to 3.0.2 patched r64207 and math/R-cran-SuppDists to 1.1-9.1;Brendan Fabeny2013-11-131-1/+1
| | | | | | | | | adjust dependent ports Reviewed by: pfg, thierry, tota Notes: svn path=/head/; revision=333659
* Update to libmpc version 1.0.1 which brings the following fixes:Gerald Pfeifer2013-10-261-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Switched to automake 1.11.6, see CVE-2012-3386. - #14669: Fixed extraction of CC from gmp.h. - Fixed case of intermediate zero real or imaginary part in mpc_fma, found by hydra with GMP_CHECK_RANDOMIZE=1346362345. This is on top of the following changes from version 1.0 - Licence change towards LGPLv3+ for the code and GFDLv1.3+ (with no invariant sections) for the documentation. - 100% of all lines are covered by tests - Renamed functions . mpc_mul_2exp to mpc_mul_2ui . mpc_div_2exp to mpc_div_2ui - 0^0, which returned (NaN,NaN) previously, now returns (1,+0). - Removed compatibility with K&R compilers, which was untestable due to lack of such compilers. - New functions . mpc_log10 . mpc_mul_2si, mpc_div_2si - Speed-ups . mpc_fma - Bug fixes . mpc_div and mpc_norm now return a value indicating the effective rounding direction, as the other functions. . mpc_mul, mpc_sqr and mpc_norm now return correct results even if there are over- or underflows during the computation. . mpc_asin, mpc_proj, mpc_sqr: Wrong result when input variable has infinite part and equals output variable is corrected. . mpc_fr_sub: Wrong return value for imaginary part is corrected. Convert to the new LIB_DEPENDS standard and remove hard-coded .so versions from a couple of dependent ports. Bump PORTREVISIONS of all dependent ports. PR: 183141 Approved by: portmgr (bdrewery) Notes: svn path=/head/; revision=331644
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | math) Notes: svn path=/head/; revision=327746
* - Update to 2.3.6Wen Heping2013-07-203-9/+24
| | | | Notes: svn path=/head/; revision=323345
* Update math/R to 3.0.1-patched, and adjust dependent ports;Brendan Fabeny2013-05-281-1/+1
| | | | | | | | | | synchronize math/rpy with upstream repository Reviewed by: wen Approved by: wen, tota Notes: svn path=/head/; revision=319316
* update math/R to 2.15.3, and adjust dependent portsBrendan Fabeny2013-03-071-1/+1
| | | | Notes: svn path=/head/; revision=313562
* update the R base ports to 2.15.2 and adjust dependent portsBrendan Fabeny2013-01-041-7/+2
| | | | | | | Reviewed by: thierry, tota, wen Notes: svn path=/head/; revision=309935
* update math/R to 2.15.1, switch to the new options format, andBrendan Fabeny2012-06-261-1/+1
| | | | | | | adjust dependent ports Notes: svn path=/head/; revision=300051
* - update png to 1.5.10Dirk Meyer2012-06-011-1/+1
| | | | Notes: svn path=/head/; revision=297915
* - update math/R-cran-psych to 1.2.1 [1]Brendan Fabeny2012-05-041-0/+1
| | | | | | | | | | | | | | | - update math/R to 2.15.0, and adjust dependent ports - minor changes to bsd.cran.mk [2]: rename MASTER_CRAN_SITES to MASTER_SITE_CRAN, as in bsd.sites.mk; make the install target more flexible and allow CRAN ports to override it; add a regression-test target; set USE_FORTRAN to match math/R; remove some of the redundant checks of USE_R_MOD; honor NOPORTDATA and NOPORTDOCS Reviewed by: thierry, tota, wen Approved by: D. Rue (maintainer) [1], wen [2] Notes: svn path=/head/; revision=296023
* - Update to 2.2.6Wen Heping2012-04-232-4/+3
| | | | Notes: svn path=/head/; revision=295299
* update math/R to 2.14.2, and adjust dependent portsBrendan Fabeny2012-03-031-1/+1
| | | | Notes: svn path=/head/; revision=292607
* update math/R to 2.14.1, and adjust dependent portsBrendan Fabeny2012-01-181-0/+1
| | | | Notes: svn path=/head/; revision=289429
* - update to 2.2.5Wen Heping2012-01-112-4/+3
| | | | Notes: svn path=/head/; revision=288939
* update math/R to 2.14.0, math/R-cran-sp to 0.9-91, and adjustBrendan Fabeny2011-11-271-0/+1
| | | | | | | | | | dependent ports Approved by: linimon (portmgr), thierry, tota, wen Feature safe: yes Notes: svn path=/head/; revision=286477
* - Update to 2.2.4Wen Heping2011-10-132-4/+3
| | | | Notes: svn path=/head/; revision=283473
* update math/R to 2.13.2, and adjust dependent portsBrendan Fabeny2011-10-111-0/+1
| | | | Notes: svn path=/head/; revision=283375
* - Update to 2.2.3Wen Heping2011-09-273-5/+36
| | | | Notes: svn path=/head/; revision=282464
* update R to 2.13.1 [1], and adjust dependent ports (thisBrendan Fabeny2011-07-281-1/+1
| | | | | | | | | | | | includes workarounds intended to fix the broken sparc64 build, and fixes to the static libR, which is now in a separate slave port, math/libR) PR: 158947 [1] Submitted by: wen ([1], independently) Notes: svn path=/head/; revision=278443
* - update to 2.13.0Brendan Fabeny2011-05-071-2/+8
| | | | | | | | | | | | | | | | | | | | | | | - switch to the bundled Rblas and Rlapack by default (this can be changed by setting BLAS and LAPACK) which favors correctness in some corner cases over a slight performance penalty; this will be revisited after the blas and lapack updates - replace the STATIC_LIBR option with a LIBR option (on by default): if on, libR.a and libR.so are installed, and R is linked to libR.so. Otherwise, R is static, and no libRs are installed. - remove the superfluous copy of libR.so in ${LOCALBASE}/lib [1] - enable the cairo and pango elements in the X11() graphics device by default, controlled by new PANGOCAIRO option - add a few small patches to dependent ports, bumping PORTREVISION where necessary PR: 153309 [1] Approved by: thierry (rkward*), wen (rpy*, R-cran-*) Notes: svn path=/head/; revision=273724
* - Get Rid MD5 supportMartin Wilke2011-03-201-1/+0
| | | | Notes: svn path=/head/; revision=271346
* - Update R to 2.12.2, a bugfix releaseBrendan Fabeny2011-02-281-1/+1
| | | | | | | | | | - Bump PORTREVISION of dependent ports, where necessary Approved by: makc, miwi (mentors, implicit) Notes: svn path=/head/; revision=270002
* - Update R to 2.12.1Brendan Fabeny2011-01-291-0/+1
| | | | | | | | | | | | - Bump PORTREVISION of dependent ports Approved by: makc, miwi (mentors, implicit) pav (portmgr) Feature safe: yes Notes: svn path=/head/; revision=268391
* - Update to 2.1.3Wen Heping2010-06-277-67/+157
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=257036
* - Fix the PLIST error reported by QAT@Wen Heping2010-05-022-2/+2
| | | | Notes: svn path=/head/; revision=253525
* - update to 1.4.1Dirk Meyer2010-03-281-1/+1
| | | | | | | | Reviewed by: exp8 run on pointyhat Supported by: miwi Notes: svn path=/head/; revision=251605
* - update to jpeg-8Dirk Meyer2010-02-051-1/+1
| | | | Notes: svn path=/head/; revision=249285
* - Fix the build error reported by pointyhatWen Heping2009-12-293-2/+15
| | | | Notes: svn path=/head/; revision=246831
* - Bump for R 2.9.2Pav Lucistnik2009-09-032-4/+2
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=240798
* - bump all port that indirectly depends on libjpeg and have not yet been ↵Dirk Meyer2009-07-311-1/+1
| | | | | | | | | bumped or updated Requested by: edwin Notes: svn path=/head/; revision=238701
* - Chase R updatePav Lucistnik2009-06-182-2/+2
| | | | Notes: svn path=/head/; revision=236242