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* Add science/minc2.Thierry Thomas2006-04-301-0/+1
| | | | | | | | | | | | | | | MINC (Medical Imaging NetCDF) is a medical imaging data format and an associated set of tools and libraries. MINC was created in 1993 by Peter Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological Institute. Many others have contributed to the design and implementation MINC over the years. PR: ports/93495 Submitted by: Jason Bacon <bacon (at) smithers.neuro.mcw.edu> Repocopied by: marcus Notes: svn path=/head/; revision=160899
* ElmerPost - the Visualization of Numerical Results.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | | | The function of ElmerPost is to visualize the numerical results produced by ElmerSolver and other finite element programs. ElmerPost operates with the data specific to the unknown variables (temperature, velocity, pressure, displacement etc.) defined in the mathematical model. ElmerPost plots e.g. contours and vector fields, and can manipulate computed data into another form using the built-in MATC-language (for instance heat fluxes from temperature distributions). Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160363
* ElmerFront - the Graphical User Interface.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | ElmerFront is a tool for initializing the computational process in Elmer. It communicates with external software producing geometrical data, i.e., CAD files and computational meshes. ElmerFront generates its own finite element meshes, allows the user to build mathematical models graphically, and finally produces input data for ElmerSolver. Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160361
* ElmerSolver - the Solution of Partial Differential Equations.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | ElmerSolver is thus an independent module that processes the computational mesh and the model input file containing references to the selected equations and model parameters. ElmerSolver makes the equations into a discrete form, handles coupled systems, non-linearities and time-dependences, and provides output data for visualization. Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160359
* HUTIter library for use in the Elmer FEM package.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM). Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160357
* MATC language library used by Elmer FEM package.Thierry Thomas2006-04-241-0/+1
| | | | | | | Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160353
* Input/Output Data base interface for use in the ELMER FEM package.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM) Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160351
* ElmerGrid is a utility program for fast creation of structured 2D andThierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | | | | | | extruded and rotated 3D geometries. ElmerGrid is independent but fully supports ElmerSolver and ElmerPost. It may be used to create linear, quadratic and cubic triangles and rectangles. It has also versatile capabilities in mesh manipulation. ElmerGrid may also be used in grid manipulation. ElmerGrid may, for example, be used to transfer different mesh formats to that understood by ElmerSolver or ElmerPost. ElmerGrid also includes mesh partitioning routines that have been optimized for ElmerSolver. The partitioning may be done by METIS or by a simple geometric division. Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160349
* A Mesh Generation Utility for use with the ELMER FEM package.Thierry Thomas2006-04-241-0/+1
| | | | | | | | | | | | | Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM) Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=160345
* A program for doing calculation on Smith Chart, similar in functionality toThierry Thomas2006-03-191-0/+1
| | | | | | | | | | | | | xsmc but with a simpler user interface; written with GNU/GTK library and released under GNU/GPL. Written by Lapo Pieri IK5NAX WWW: http://www.qsl.net/ik5nax PR: ports/93224 Submitted by: Diane Bruce <db (at) db.net> - VA3DB Notes: svn path=/head/; revision=157678
* Add fasthenry , a multipole-accelerated inductance analysis program.Renato Botelho2006-03-151-0/+1
| | | | | | | | PR: ports/93969 Submitted by: Pedro Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=157201
* Add fastcap , a three-dimensional capacitance extraction program.Renato Botelho2006-03-151-0/+1
| | | | | | | | PR: ports/93968 Submitted by: Pedro Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=157198
* MINC (Medical Imaging NetCDF) is a medical imaging data format and anThierry Thomas2006-02-121-0/+1
| | | | | | | | | | | | | associated set of tools and libraries. MINC was created in 1993 by Peter Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological Institute. Many others have contributed to the design and implementation MINC over the years. PR: ports/91918 Submitted by: Jason W. Bacon <bacon (at) smithers.neuro.mcw.edu> Notes: svn path=/head/; revision=155836
* Remove expired port science/glensVasil Dimov2006-02-081-1/+0
| | | | | | | Approved by: garga (mentor) Notes: svn path=/head/; revision=155503
* Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5.Thierry Thomas2006-01-301-0/+1
| | | | | | | | | PR: 92497 Submitted by: /me Repocopied by: marcus Notes: svn path=/head/; revision=154853
* Common Data Format (CDF) is a conceptual data abstraction for storingThierry Thomas2006-01-281-0/+1
| | | | | | | | | | | | | | | | multi-dimensional data sets. The basic component of CDF is a software programming interface that is a device independent view of the CDF data model. The application developer is insulated from the actual physical file format for reasons of conceptual simplicity, device independence, and future expandability. CDF files created on any given platform can be transported to any other platform on to which CDF is ported and used with any CDF tools or layered applications. A comparison between CDF, netCDF, HDF and HDF5 is available at <http://cdf.gsfc.nasa.gov/html/FAQ.html>. Notes: svn path=/head/; revision=154665
* Add new port science/afniVasil Dimov2006-01-251-0/+1
| | | | | | | | | | | | | | | | AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing 3 dimensional images, especially functional MRI images used in brain mapping research. WWW: http://afni.nimh.nih.gov/ PR: ports/90752 Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> Reviewed by: garga (mentor) Approved by: garga (mentor) Notes: svn path=/head/; revision=154438
* The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can simulateThierry Thomas2006-01-221-0/+1
| | | | | | | | | | | | | | anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options. WWW: http://www.opencfd.co.uk/openfoam/index.html PR: ports/91886 Submitted by: thierry Notes: svn path=/head/; revision=154148
* Add V_Sim, a program to visualize atomic structures such as crystals, grainThierry Thomas2005-12-101-0/+1
| | | | | | | boundaries and so on. Notes: svn path=/head/; revision=150833
* GDL - GNU Data Language - is a free IDL (Interactive Data Language)Thierry Thomas2005-10-311-0/+1
| | | | | | | | | | | | | | compatible incremental compiler (i.e. runs IDL programs). IDL is a registered trademark of Research Systems Inc. (see: <http://www.rsinc.com/>) Remark: slave port for Python module intentionnally not yet committed. WWW: http://gnudatalanguage.sourceforge.net/ Notes: svn path=/head/; revision=146853
* Add gerris 0.6.0, a scientific CFD simulator.Thierry Thomas2005-09-251-0/+1
| | | | | | | | | | | | | | | Gerris is an Open Source Free Software library for the solution of partial differential equations describing fluid flow. Gerris is supported by NIWA (National Institute of Water and Atmospheric research) and by the Marsden Fund of the Royal Society of New Zealand. The code is written entirely in C and uses both the GLib Library and the GTS Library for geometrical functions and object-oriented programming. PR: 86297 Submitted by: Oliver Dunkl <odunkl (at) gmx.net> Notes: svn path=/head/; revision=143520
* PAIDA is pure Python scientific analysis package and implements AIDA (AbstractPav Lucistnik2005-07-181-0/+1
| | | | | | | | | | Interfaces for Data Analysis). PR: ports/83599 Submitted by: Vsevolod Stakhov <vsevolod@highsecure.ru> Notes: svn path=/head/; revision=139513
* New port: ParaView is a powerful scientific visualization application, designedEric Anholt2005-06-141-0/+1
| | | | | | | with the need to visualize large data sets in mind. Notes: svn path=/head/; revision=137414
* New port for mbdyn, which is a MultiBody Dynamics simulation software. It comesPav Lucistnik2005-05-221-0/+1
| | | | | | | | | | | | with lots of libraries etc. There are two knobs which are in development at the moment so I disabled them with an IGNORE message. They need some work and maybe some testing. PR: ports/81136 Submitted by: Kay Lehmann <kay_lehmann@web.de> Notes: svn path=/head/; revision=135874
* Add lamprop 1.3.1.Thierry Thomas2005-05-151-0/+1
| | | | | | | | | | | | | Lamprop takes in input file describing the lay-up and constituent materials of a fiber-reinforced composite laminate, and calculates some mechanical and other properties. The submitter is the original author of the software, and will maintain the port. PR: 81066 Submitted by: Roland Smith <rsmith (at) xs4all.nl> Notes: svn path=/head/; revision=135312
* Remove mxpKris Kennaway2005-03-271-1/+0
| | | | | | | | Forgotten by: maho Approved by: portmgr (self) Notes: svn path=/head/; revision=132085
* Add mxp (Mandelbrot explorer). Mxp is an X application for computing and ↵Maho Nakata2005-03-191-0/+1
| | | | | | | | | | | | | | | | | | | | | exploring Mandelbrot sets. Features of mxp include: - zoom and un-zoom - dynamic resizing of drawing window - setup save/load - asynchronous image generation (buttons always work) - GIF output - animation - nine color schemes - color rotation - color change options - detailed statistics WWW: http://www.ibiblio.org/pub/Linux/apps/math/fractals/ Notes: svn path=/head/; revision=131630
* . Add a port of the Szip scientific compression library, used by currentGreg Lewis2005-03-171-0/+1
| | | | | | | | | | | | versions of HDF: "Szip is an implementation of the extended-Rice lossless compression algorithm. WWW: http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/" Notes: svn path=/head/; revision=131521
* DCL is scientific graphic library for geoscience, written in Fortran.Sergey Matveychuk2005-02-241-0/+1
| | | | | | | | PR: ports/76856 Submitted by: Shin'ya Murakami <murakami (at) ahs.scitec.kobe-u.ac.jp> Notes: svn path=/head/; revision=129692
* science/cdcl -> update to 5.3 and use gtk by defaultSergey Matveychuk2005-02-241-2/+0
| | | | | | | | | | | | | | science/cdcl-gtk -> delete science/ruby-dcl -> update to 1.5 and use gtk by default science/ruby-dcl-gtk -> delete science/ruby-gphys -> update to 0.3.5 and fix dependency science/gave -> update to 1.1.3 and fix dependency PR: ports/76853 Submitted by: maintainer Notes: svn path=/head/; revision=129690
* McStas - Monte Carlo simulation of neutron instrumentsPav Lucistnik2005-02-181-0/+1
| | | | | | | | | | | | | | | | | | McStas is an ongoing project to create a general tool for simulating neutron scattering instruments. The project is conducted at Risoe National Laboratory in cooperation with the ILL. McStas is based on a compiler that reads a high-level specification language defining the instrument to be simulated and produces C code that performs the Monte Carlo Simulation. WWW: http://neutron.risoe.dk/ PR: ports/66031 Submitted by: Joerg Pulz <Joerg.Pulz@frm2.tum.de> Notes: svn path=/head/; revision=129176
* - Move emulators/qcl -> science/qcl on maintainer's request.Pav Lucistnik2005-02-101-0/+1
| | | | | | | Repocopy by: marcus Notes: svn path=/head/; revision=128455
* Add buddy 2.4, a Binary Decision Diagram library.Thierry Thomas2005-01-221-0/+1
| | | | | | | | PR: 71221 Submitted by: Leland Wang Notes: svn path=/head/; revision=127101
* DeViSoR is abbreviated for "Design and Visualization of Software Resource". TheHerve Quiroz2005-01-211-0/+1
| | | | | | | | | | | | | | | | | | | | | | DeViSoRGrid application is part of that software family and is primarily used for the following tasks, so far in 2D only: * Geometry generation * Manual coarse mesh generation * Grid visualisation at all levels All of this can be done in a very confortable manner using a simple point and click interface like in common vector-based image processing software. Both the reliable FEAT file format and the new FEAST format with integrated parallelism are supported. WWW: http://www.featflow.de/ PR: 75973 Submitted by: Pedro F. Giffuni <giffunip@asme.org> Notes: svn path=/head/; revision=127045
* Add a port of udunits:Greg Lewis2005-01-141-0/+1
| | | | | | | | | | | | | | The Unidata units library, udunits, supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement. WWW: http://www.unidata.ucar.edu/packages/udunits/ Obtained from: Gentoo (partially) Notes: svn path=/head/; revision=126463
* Add isaac-cfd 4.2, Integrated Solution Algorithm for ArbitraryThierry Thomas2004-12-291-0/+1
| | | | | | | | | | Configuration. PR: 75529 Submitted by: Pedro F. Giffuni Notes: svn path=/head/; revision=125463
* Add gsystem, a virtual reality simulation framework, specialised on life andPav Lucistnik2004-12-281-0/+1
| | | | | | | | | | | | evolution simulation. I'm a main developer of this framework and I will also keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform. See http://www.g-system.at for details. PR: ports/75466 Submitted by: Raphael Langerhorst <raphael-langerhorst@gmx.at> Notes: svn path=/head/; revision=125394
* Add x11iraf 1.3.1, which provides graphical tools to work with IRAF.Thierry Thomas2004-12-261-0/+1
| | | | | | | | PR: 70816 Submitted by: David Syphers. Notes: svn path=/head/; revision=125246
* Slave port to science/libsvmSergey Matveychuk2004-12-111-0/+1
| | | | | | | | PR: ports/73981 Submitted by: Rong-En Fan <rafan(at)infor.org> Notes: svn path=/head/; revision=123685
* SIMLIB/C++ is the SIMulation LIBrary for C++ programming language. You canPav Lucistnik2004-11-271-0/+1
| | | | | | | | | | | | create models directly in C++ language with the use of predefined simulation tools from the library. SIMLIB allows object-oriented description of models based on simulation abstractions. Current version allows a description of continuous, discrete, combined, 2D/3D vector, and fuzzy models. Requested by: Roman Divacky Notes: svn path=/head/; revision=122623
* Add omnetpp, a public-source, component-based, modular and open-architecturePav Lucistnik2004-11-151-0/+1
| | | | | | | | | | | | | | simulation environment with strong GUI support and an embeddable simulation kernel. Its primary application area is the simulation of communication networks and because of its generic and flexible architecture, it has been successfully used in other areas like the simulation of IT systems, queueing networks, hardware architectures and business processes as well. PR: ports/73920 Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de> Notes: svn path=/head/; revision=121716
* Add getdp 1.0.0, a rather general finite element solver using mixedThierry Thomas2004-11-151-0/+1
| | | | | | | | | finite elements. Suggested by: Pedro F. Giffuni. Notes: svn path=/head/; revision=121709
* New port science/gromacsMaho Nakata2004-10-191-0/+1
| | | | | | | | | | | | | | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles, and also the World's fastest Molecular Dynamics under GPL. PR: 71211 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Reviewed by: Bruno Afonso <brunomiguel@dequim.ist.utl.pt> Notes: svn path=/head/; revision=119761
* add py-scipy 0.3Ying-Chieh Liao2004-08-261-0/+1
| | | | | | | Scientific tools for Python Notes: svn path=/head/; revision=117296
* Add vmd, a molecular visualization program for displaying, animating, andPav Lucistnik2004-08-211-0/+1
| | | | | | | | | | analyzing large biomolecular systems using 3-D graphics and built-in scripting. PR: ports/70509 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Notes: svn path=/head/; revision=116960
* Add abinit, calculates total energy, charge densityMaho Nakata2004-08-141-0/+1
| | | | | | | and electronic structure of systems. Notes: svn path=/head/; revision=116182
* Add kst 0.97.Markus Brueffer2004-04-301-0/+1
| | | | | | | | | | | | | | | | | | | | | | | | | kst is a program for looking at data streams. It can plot: - x-y plots - power spectra - histograms - equations (including equations of data streams). - data in files which are being updated as data is being logged, in which case it can act as a plotter for a chart recorder. - much more You can use the mouse to rapidly zoom into interesting parts of the plots. In addition to a complete GUI, kst has a convenient command line interface for rapid access to plotting data in files. kst can read data from stdin. It provides a DCOP interface for remote manipulation, and supports several file formats in use in scientific projects around the world. WWW: http://omega.astro.utoronto.ca/kst/ WWW: http://extragear.kde.org/apps/kst.php Notes: svn path=/head/; revision=108034
* Remove category pkg/COMMENT files in favour of a COMMENT variable in theKris Kennaway2004-04-021-0/+2
| | | | | | | | | | category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651 Notes: svn path=/head/; revision=105948
* Add ovt 2.3, the Orbit Visualization Tool.Thierry Thomas2004-03-231-0/+1
| | | | | | | | PR: 57860 Submitted by: Mykola Khotyaintsev <ko@nest.irfu.se> Notes: svn path=/head/; revision=105088
* A Density functional software. This software has a unique designMaho Nakata2004-03-201-0/+1
| | | | | | | | | | | | | | | | based upon the DFT++ algebraic framework introduced in Computer Physics Communications 128, 1-45 (June 2000). This framework allows us to transparently separate the computational guts (cache optimization, parallelization, etc.) from the introduction of new representations (plane waves, wavelets) and new physics (new density functionals, linear response theory, dielectric solutions). The software is fully cache and register optimized, and runs in serial, threaded, MPI and mixed threaded-MPI parallel environments. Notes: svn path=/head/; revision=104696
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