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* - Upgrade math/eigen3 to 3.3.8;Thierry Thomas2020-12-121-0/+1
| | | | | | | | | | | | | - Add some dependencies which might be detected by Find_Package but not registered; - Bump PORTREVISION of consumers. PR: 250833 Submitted by: /me Approved by: tcberner@ (KDE / maintainer) + exp-run Notes: svn path=/head/; revision=557839
* science/avogadrolibs: Remove a broken option VTK set to default by mistakeYuri Victorovich2020-04-271-1/+1
| | | | | | | Reported by: cmt Notes: svn path=/head/; revision=533149
* math/vtk8: Update 8.1.2 -> 8.2.0Yuri Victorovich2020-04-261-2/+2
| | | | | | | | science/liggght is updated 3.8.0 -> 3.8.0-26 because only later revisions support vtk8-8.2.0 3 dependent ports bumped. Notes: svn path=/head/; revision=533086
* science/avogadrolibs: Update 1.92.1 -> 1.93.0Yuri Victorovich2020-02-063-13/+13
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=525363
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-0/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* science/avogadrolibs: Update 1.92.0 -> 1.92.1Yuri Victorovich2019-05-113-7/+6
| | | | Notes: svn path=/head/; revision=501276
* Move: science/mmtf -> science/mmtf-cppYuri Victorovich2019-02-161-1/+1
| | | | | | | Also update its COMMENT to be more descriptive Notes: svn path=/head/; revision=493031
* science/mmtf: Update g20180730 -> 1.0.0Yuri Victorovich2019-02-121-1/+1
| | | | | | | Bump science/avogadrolibs since it uses this headers-only library. Notes: svn path=/head/; revision=492755
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-161-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | a symbol matches multiple clauses the last one takes precedence. If the catch-all is last it captures everything. In the case of Qt5 libraries this caused all symbols to have a Qt_5 label while some should have Qt_5_PRIVATE_API. This only affects lld because GNU ld always gives the catch-all lowest priority. Older versions of Qt5Webengine exported some memory allocation symbols from the bundled Chromium. Version 5.9 stopped exporting these [1] but the symbols were kept as weak wrappers for the standard allocation functions to maintain binary compatibility. [2][3] The problem is that the call to the standard function in these weak wrappers is only resolved to the standard function if there's a call to this standard function in other parts of Qt5Webengine, because only then is there a non-weak symbol that takes precedence over the weak one. If there's no such non-weak symbol the call in the weak wrapper resolves to the weak wrapper itself creating an infinite call loop that overflows the stack and causes a crash. Some of the allocation functions are variants of C++ new and delete and it probably depends on the compiler whether these variants are used in other parts of Qt5Webengine. Remove the weak wrappers (make them Linux specific). This isn't binary compatible but we are already breaking that with the changes to the symbol versions. [1] https://github.com/qt/qtwebengine/commit/5c2cbfccf9aafb547b0b30914c4056abd25942a4 [2] https://github.com/qt/qtwebengine/commit/2ed5054e3a800fa97c2c9e920ba1e6ea4b6ef2a5 [3] https://github.com/qt/qtwebengine/commit/009f5ebb4bd6e50188671e0815a5dae6afe39db5 Bump all ports that depend on Qt5. PR: 234070 Exp-run by: antoine Approved by: kde (adridg) Notes: svn path=/head/; revision=490472
* Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh2019-01-051-1/+1
| | | | | | | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://portal.hdfgroup.org/display/support/HDF5%201.10.4#releasenotes PR: 233070 Submitted by: wen Notes: svn path=/head/; revision=489412
* Update math/eigen3 to 3.3.7Tobias C. Berner2018-12-261-1/+1
| | | | | | | | - http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.6 - http://eigen.tuxfamily.org/index.php?title=ChangeLog#Eigen_3.3.7 Notes: svn path=/head/; revision=488363
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-251-1/+1
| | | | | | | | | | | | | | Ports that build out of source now simply can use "USES=cmake" instead of "USES=cmake:outsource". Ports that fail to build out of source now need to specify "USES=cmake:insource". I tried to only set insource where explictely needed. PR: 232038 Exp-run by: antoine Notes: svn path=/head/; revision=488341
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2018-12-121-0/+1
| | | | | | | | | | | | | | | | | | defined via Mk/bsd.default-versions.mk which has moved from GCC 7.4 t GCC 8.2 under most circumstances. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, as a double check, everything INDEX-11 showed depending on lang/gcc7. PR: 231590 Notes: svn path=/head/; revision=487272
* science/avogadrolibs: Update 1.91.0-107 -> 1.92.0Yuri Victorovich2018-11-093-13/+20
| | | | | | | Also add 2 pull requests that fix obvious problems. Notes: svn path=/head/; revision=484502
* science/avogadrolibs: Update 1.91.0 -> 1.91.0-107Yuri Victorovich2018-10-188-51/+10
| | | | | | | jsoncpp isn't used any more, mmtf is now used. Notes: svn path=/head/; revision=482387
* science/avogadrolibs: Add optionsYuri Victorovich2018-10-172-142/+182
| | | | Notes: svn path=/head/; revision=482273
* New port: science/avogadrolibs: Avogadro2 libraries for chemical editor and ↵Yuri Victorovich2018-10-1711-0/+350
visualization applications Notes: svn path=/head/; revision=482265
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