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* Remove science/openfoam as it has been marked BROKEN for over 5 months.Erwin Lansing2009-06-1349-11052/+0
| | | | Notes: svn path=/head/; revision=235743
* Remove science/elmerfront as it has been marked BROKEN over 3 months ago.Erwin Lansing2009-06-136-152/+0
| | | | Notes: svn path=/head/; revision=235742
* Convert most of remaining ports that depend on xorg-libraries toDmitry Marakasov2009-06-093-6/+6
| | | | | | | | | | | | | | | | modular xorg. - supply corresponding USE_XORG for all imake-using ports that need it - USE_IMAKE no longer implies USE_XLIB in absence of USE_XORG - retire USE_X_PREFIX which is not really used anywhere after the above change - a few minor nits like whitespace and SF macro Tested by: 2 tinderbox runs by pav Approved by: portmgr (pav) Notes: svn path=/head/; revision=235506
* - Mark MAKE_JOBS_UNSAFE, fails with forced jobs on my tinderboxDmitry Marakasov2009-06-091-0/+1
| | | | Notes: svn path=/head/; revision=235501
* Fix build on amd64 and now it's usable.Maho Nakata2009-06-083-3/+13
| | | | Notes: svn path=/head/; revision=235420
* - Update to 0.9.6Dennis Herrmann2009-06-073-55/+102
| | | | | | | | PR: ports/135312 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer) Notes: svn path=/head/; revision=235377
* - Update to 4.0.5Martin Wilke2009-06-063-5/+13
| | | | | | | | PR: 135246 Submitted by: Florian Smeets <flo@kasimir.com> (maintainer) Notes: svn path=/head/; revision=235341
* - Update to 0.9.5Dmitry Marakasov2009-06-053-12/+89
| | | | | | | | PR: 135263 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> (maintainer) Notes: svn path=/head/; revision=235287
* - Update to 0.09Philip M. Gollucci2009-06-052-4/+4
| | | | | | | | | PR: ports/134837 Approved by: maintainer timeout (clsung; 15 days) Submitted by: me Notes: svn path=/head/; revision=235278
* - Update to 2.0.3Martin Wilke2009-06-053-7/+7
| | | | | | | | PR: 135210 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Notes: svn path=/head/; revision=235242
* Upgrade to 3.4.4.Thierry Thomas2009-06-052-4/+4
| | | | | | | Changelog at <http://inac.cea.fr/L_Sim/V_Sim/changelog.en.html#3.4>. Notes: svn path=/head/; revision=235224
* - Update to 1.3.1Li-Wen Hsu2009-06-052-5/+4
| | | | | | | | PR: ports/134179 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=235213
* - Resolve LATEST_LINK conflictPav Lucistnik2009-05-312-0/+2
| | | | Notes: svn path=/head/; revision=234941
* - Fix build on sparc64 by files/patch-include__gmx_cyclecounter.hRong-En Fan2009-05-302-16/+23
| | | | | | | | | | | | | | - Fix WITH_MPICH - Use LOCALBASE for reference to bits installed by others - Pass maintainership to the submitter - Pet portlint(1): IGNORE PR: ports/133242 Submitted by: Florian Smeets <flo at kasimir.com> Approved by: Stephen Montgomery-Smith <stephen at math.missouri.edu> (maintainer) Notes: svn path=/head/; revision=234832
* Take over.Maho Nakata2009-05-291-1/+1
| | | | Notes: svn path=/head/; revision=234750
* Chase the goffice update.Joe Marcus Clarke2009-05-242-3/+4
| | | | Notes: svn path=/head/; revision=234505
* Avogadro is an advanced molecular editor designed for cross-platform use inDmitry Marakasov2009-05-225-0/+391
| | | | | | | | | | | | | | computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. It offers flexible rendering and a powerful plugin architecture. WWW: http://avogadro.openmolecules.net/ PR: 134710 Submitted by: Troels Kofoed Jacobsen <tkjacobsen@gmail.com> Notes: svn path=/head/; revision=234419
* - Chase fftw3 updatePav Lucistnik2009-05-183-6/+7
| | | | Notes: svn path=/head/; revision=234143
* Chemistry-MacroMol is a toolkit includes basic objects and methods toMartin Wilke2009-05-175-0/+42
| | | | | | | | | | | | | | | | describe macromolecules, a macromolecule is just a molecule that consists of several "domains". For example, a protein consists of aminoacid residues, or a nucleic acid consists of bases. Therefore Chemistry::MacroMol is derived from Chemistry::Mol, with additional methods to handle the domains. WWW: http://search.cpan.org/dist/Chemistry-MacroMol/ PR: ports/134609 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=234086
* p5-Chemistry-File-PDB reads and writes PDB files. The PDB file formatMartin Wilke2009-05-175-0/+41
| | | | | | | | | | | | | is commonly used to describe proteins, particularly those stored in the Protein Data Bank. WWW: http://search.cpan.org/dist/Chemistry-File-PDB/ PR: ports/134612 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=234085
* Chemistr-Mol is a toolkit includes basic objects and methods toMartin Wilke2009-05-165-0/+52
| | | | | | | | | | | | | describe molecules. It consists of several modules: Chemistry::Mol, Chemistry::Atom, Chemistry::Bond, and Chemistry::File. WWW: http://search.cpan.org/dist/Chemistry-Mol/ PR: ports/134462 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=234042
* - Chase readline updatePav Lucistnik2009-05-132-4/+4
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=233852
* - Update to 0.99.12Beat Gaetzi2009-05-133-5/+4
| | | | | | | Approved by: miwi (mentor) Notes: svn path=/head/; revision=233840
* Release these ports into the wild due to maintainer-timeouts and noMark Linimon2009-05-122-4/+1
| | | | | | | response to email. We hope to see him back again sometime. Notes: svn path=/head/; revision=233796
* - Update naively to 0.10.4 and mark BROKEN: does not compile with goffice-0.7.6Pav Lucistnik2009-05-112-5/+6
| | | | Notes: svn path=/head/; revision=233715
* Chase the API changes in goffice-0.7.6.Joe Marcus Clarke2009-05-103-4/+33
| | | | Notes: svn path=/head/; revision=233635
* - Update to 1.00.00Martin Wilke2009-05-103-5/+8
| | | | | | | | PR: 134217 Submitted by: Wen Heping <wenheping@gmail.com> (maintainer) Notes: svn path=/head/; revision=233631
* Fix patching by merging two patches for the same file.Joe Marcus Clarke2009-05-092-84/+73
| | | | Notes: svn path=/head/; revision=233546
* Chase the goffice update.Joe Marcus Clarke2009-05-092-4/+4
| | | | Notes: svn path=/head/; revision=233482
* Update to 20090112 R1 version.Maho Nakata2009-05-088-79/+85
| | | | Notes: svn path=/head/; revision=233409
* - reset MAINTAINER per requestYen-Ming Lee2009-05-061-1/+1
| | | | | | | | PR: 134253 Submitted by: giffunip@tutopia.com Notes: svn path=/head/; revision=233296
* Merge some patches from gchemutils SVN to fix the build with goffice 0.7.5.Joe Marcus Clarke2009-05-055-3/+274
| | | | Notes: svn path=/head/; revision=233255
* Add some more goffice TYPE name conversions.Joe Marcus Clarke2009-05-036-0/+89
| | | | Notes: svn path=/head/; revision=233169
* Fix another TYPE name change with goffice 0.7.5.Joe Marcus Clarke2009-05-031-0/+20
| | | | Notes: svn path=/head/; revision=233168
* Add another goffice-0.7.5 build fix.Joe Marcus Clarke2009-05-031-0/+11
| | | | Notes: svn path=/head/; revision=233142
* Fix the build with goffice 0.7.5.Joe Marcus Clarke2009-05-031-0/+11
| | | | Notes: svn path=/head/; revision=233141
* Chase the goffice update.Joe Marcus Clarke2009-05-032-4/+4
| | | | Notes: svn path=/head/; revision=233138
* - Update to 1.1.0Martin Wilke2009-04-304-42/+7
| | | | | | | | PR: 133337 Submitted by: Wen Heping <wenheping@gmail.com> Notes: svn path=/head/; revision=233010
* Update to 2.2.1Max Brazhnikov2009-04-266-20/+23
| | | | Notes: svn path=/head/; revision=232776
* Fix build with NOPORTDOCS, NOPORTEXAMPLES.Maho Nakata2009-04-241-2/+2
| | | | | | | Submitted by: QAT Notes: svn path=/head/; revision=232659
* Machine Learning PY (mlpy) is a high-performance Python package forMartin Wilke2009-04-235-0/+125
| | | | | | | | | | | | | | | | | | | predictive modeling. It makes extensive use of numpy (http://scipy.org) to provide fast N-dimensional array manipulation and easy integration of C code. mlpy provides high level procedures that support, with few lines of code, the design of rich Data Analysis Protocols (DAPs) for preprocessing, clustering, predictive classification and feature selection. Methods are available for feature weighting and ranking, data resampling, error evaluation and experiment landscaping.The package includes tools to measure stability in sets of ranked feature lists. WWW: http://mlpy.fbk.eu/ PR: ports/133932 Submitted by: Wen Heping <wenheping at gmail.com> Notes: svn path=/head/; revision=232590
* Update to 3.4.0.Maho Nakata2009-04-217-720/+862
| | | | Notes: svn path=/head/; revision=232387
* Fix build on amd64.Maho Nakata2009-04-132-0/+22
| | | | | | | Spotted by: QAT and pav. Notes: svn path=/head/; revision=232280
* - Update to 6.02Yen-Ming Lee2009-04-112-22/+11
| | | | | | | | | PR: 133601 Submitted by: leeym Approved by: maintainer Notes: svn path=/head/; revision=232117
* 2009-03-22 science/oof: Broken with GCC 4.2 and beyondMartin Wilke2009-04-114-90/+0
| | | | | | | 2009-04-06 www/raqdevil: Master site gone, distfiles not fetchable Notes: svn path=/head/; revision=232073
* - Fix DEPRECATED outputMartin Wilke2009-04-111-0/+1
| | | | | | | Reported by: rmport Notes: svn path=/head/; revision=232071
* - Upgrade to 5.7.3Thierry Thomas2009-04-106-26/+208
| | | | | | | | | | | | | Release notes at <http://www.abinit.org/Infos_v5.7/release_notes/release_notes.html> - enable bindings to get the headers This requires makemake and GSL. Approved by: Maho (maintainer) Notes: svn path=/head/; revision=232017
* - Update maintainer mail addressDennis Herrmann2009-04-054-4/+4
| | | | | | | | | PR: ports/133397 Submitted by: Stephen Montgomery-Smith <stephen@missouri.edu> (maintainer) Approved by: tabthorpe (co-mentor) Notes: svn path=/head/; revision=231669
* Use NOPORTEXAMPLES and %%PORTEXAMPLES%% where appropiate to fix packaging withIon-Mihai Tetcu2009-04-052-39/+39
| | | | | | | | | | -DNOPORT* defined. Prompted by: QAT QA run Approved by: maintainer timeout on QATMail Notes: svn path=/head/; revision=231641
* - Update to 2.89Rong-En Fan2009-04-012-4/+4
| | | | Notes: svn path=/head/; revision=231423
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