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* - Fix LICENSEDmitry Marakasov2018-02-061-7/+13
| | | | | | | | | | | - Fix shebangs - Add NO_ARCH - Fix manpage installation by using MANPREFIX Approved by: portmgr blanket Notes: svn path=/head/; revision=461062
* New port: science/siril: Astronomical image processing softwareYuri Victorovich2018-02-046-0/+113
| | | | | | | | | | See details here: https://free-astro.org/index.php/Siril Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D14190 Notes: svn path=/head/; revision=460947
* Update to 1.9.3Sunpoet Po-Chuan Hsieh2018-02-042-5/+5
| | | | | | | | | | | | | | | - New features: - expr: added time coordinate function cdate(), ctime(), cdeltat(), ctimestep() ... - New operators: - not - logical NOT (1, if x equal 0; else 0) - Fixed bugs: - uvDestag: target grid undefined in output - runpctl: fails since release 1.8.0 - read of reduced Gaussian grid description file failed [Bug #8146] - read error on grid description file [Bug #8099] Notes: svn path=/head/; revision=460886
* science/ALPSCore: Update to 2.1.1Yuri Victorovich2018-02-034-20/+46
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Change log: https://github.com/ALPSCore/ALPSCore/releases/tag/v2.1.1 Additional port changes: Added DOCS and DOXYGEN port options. These options are added to be exactly the same way as devel/protobuf-c will be after D13651. IMO, this approach actually has a flaw that it allows the meaningless combination DOCS=on and DOXYGEN=off. I meant to discuss this further with portmgr@ but didn't yet do this. A better approach would be for DOXYGEN to enable PORTDOCS and other necessary bits that DOCS normally enables without actually requiring DOCS to be present. PR: 224162 Submitted by: Michael Danilov <mike.d.ft402@gmail.com> (maintainer) Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D14146 Notes: svn path=/head/; revision=460857
* Update to upstream version 0.19.1Thomas Zander2018-02-032-4/+4
| | | | | | | | | PR: 224973 Submitted by: riggs Approved by: demon (maintainer) Notes: svn path=/head/; revision=460791
* - Bump PORTREVISION. lang/fpc was updated to 3.0.4Jose Alonso Cardenas Marquez2018-02-012-2/+2
| | | | Notes: svn path=/head/; revision=460573
* Multiple ports:Jason W. Bacon2018-01-317-14/+7
| | | | | | | | | | | Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128 Notes: svn path=/head/; revision=460452
* Fix with DEFAULT_VERSIONS=python=3.xAntoine Brodin2018-01-301-1/+1
| | | | Notes: svn path=/head/; revision=460443
* %%PYTHON_PYOEXTENSION%% is harmful in python2 style plistsAntoine Brodin2018-01-281-187/+187
| | | | | | | Pointy hat: cs@ Notes: svn path=/head/; revision=460232
* science/sigrok-firmware-fx2lafw: Update to version 0.1.6.Boris Samorodov2018-01-282-6/+10
| | | | | | | | | | | | | | | | | | Changes: 0.1.6 (2018-01-26) --------------------------- * Fix an issue with FX2 based logic analyzers that could cause non-working and/or prematurely aborted acquisitions (bug #655). * FX2 based logic analyzers will now toggle pin PA1 during acquisition, and keep it high while idle. On fx2grok-tiny and fx2grok-flat devices there's a LED connected to PA1. Thus, those devices will visually indicate whether a firmware has been uploaded (LED will light up and stay like that while the device is idle). During any acquisition the LED will blink. * Refactor the oscilloscope code to avoid duplication (bug #984). * Fix a 'make distclean' error. * Fix a compiler warning with recent sdcc versions (e.g. v3.6.9). Notes: svn path=/head/; revision=460231
* Update to 4.3.0Carlo Strub2018-01-273-190/+194
| | | | Notes: svn path=/head/; revision=460143
* Update to 4.6.0Sunpoet Po-Chuan Hsieh2018-01-263-7/+6
| | | | | | | Changes: https://github.com/Unidata/netcdf-c/releases Notes: svn path=/head/; revision=460017
* science/mpb: back out r459622 after base r328286Jan Beich2018-01-251-4/+0
| | | | | | | | | | | | | For a short time LLD_BOOTSTRAP (on amd64) broke many USES=fortran consumers but now that it's fixed the workaround can go away. -CURRENT support in ports is primarily limited to the latest tip, not an arbitrary old version. PR: 225230 Tested by: Rainer Hurling (maintainer) Notes: svn path=/head/; revision=459910
* Fix the build on FreeBSD 12+ by using a current version of GCC whichGerald Pfeifer2018-01-211-0/+4
| | | | | | | | | | | | | | | is already used by some of the dependencies. This avoids build errors of the following kind: /lib/libgcc_s.so.1: version GCC_4.6.0 required by /usr/local/lib/gcc6/libgfortran.so.3 not found Submitted by: maintainer (Rainer Hurling <rhurlin@gwdg.de>) PR: 225230 Notes: svn path=/head/; revision=459622
* Fix packaging with python 3 by using py3kplistAntoine Brodin2018-01-202-191/+187
| | | | Notes: svn path=/head/; revision=459546
* Mark BROKEN: fails to configureAntoine Brodin2018-01-201-0/+2
| | | | | | | | | | | | checking for gcc... cc checking whether the C compiler works... no configure: error: in `/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0': configure: error: C compiler cannot create executables Reported by: pkg-fallout Notes: svn path=/head/; revision=459494
* devel/boost-*: update to 1.66.0Jan Beich2018-01-1813-9/+14
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_66_0.html PR: 223922 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D13279 Notes: svn path=/head/; revision=459315
* Upgrade bddsolve to version 1.04.Ed Schouten2018-01-172-4/+4
| | | | | | | | | | | This release includes a fix that should make it build with C++14. PR: 216080 Reviewed by: jbeich Differential Revision: https://reviews.freebsd.org/D13951 Notes: svn path=/head/; revision=459258
* Switch pkg-pist WWW: label to apropriate HTTPS addresses.Boris Samorodov2018-01-161-1/+1
| | | | Notes: svn path=/head/; revision=459182
* Switch pkg-pist WWW: label to apropriate HTTPS addresses.Boris Samorodov2018-01-161-1/+1
| | | | Notes: svn path=/head/; revision=459181
* science/chemps2: Update to 1.8.5Yuri Victorovich2018-01-152-5/+4
| | | | | | | | | | Submitted by: myself Reported by: portscout Approved by: tcberner (mentor) Differential Revision: https://reviews.freebsd.org/D13908 Notes: svn path=/head/; revision=459125
* Remove Doxygen generated directory manuals. They don't contain anythingTijl Coosemans2018-01-152-36/+2
| | | | | | | | | | important and their name contains the full path of directories which can be different on different build systems. Reported by: antoine Notes: svn path=/head/; revision=459111
* These two ports build and package without issues now on 10.4-STABLEAlexey Dokuchaev2018-01-152-5/+0
| | | | | | | running under QEMU 2.9.0. Notes: svn path=/head/; revision=459018
* - Patch configure instead of configure.in so USE_AUTOTOOLS can be removed.Tijl Coosemans2018-01-145-922/+6433
| | | | | | | | | | | | | - Use upstream build system instead of do-build and do-install. - Rename DOCS option DOXYGEN. - Add EXAMPLES option. - Depend on MPICH 3 instead of 2. - Convert to USES=blaslapack. - Use more option helpers. - Update pkg-descr. Notes: svn path=/head/; revision=458994
* - Don't run autoreconf, but run some of the autotools from pre-configureTijl Coosemans2018-01-142-40/+7
| | | | | | | | | | | | | | | instead. Autoreconf runs autoheader which replaces a handmade config header. - Remove options. DEBUG only adds -g which is already handled by WITH_DEBUG. DERIV and R12 don't have any impact. They are enabled by default upstream and the port Makefile never passed --disable-* when the options are disabled. Reasons to remove these options: the only port (science/mpqc) that depends on this port requires the options to be enabled, no additional dependencies and no significant additional build time or disk space. Notes: svn path=/head/; revision=458985
* Remove superfluous linefeeds and fix some other minor whitespace bugs.Alexey Dokuchaev2018-01-111-3/+1
| | | | Notes: svn path=/head/; revision=458755
* Do not abuse INSTALL_MAN when installing documentation, examples, andAlexey Dokuchaev2018-01-113-3/+3
| | | | | | | other miscellaneous files that are not actually manual pages (part 2). Notes: svn path=/head/; revision=458739
* - Update to 0.9.2Wen Heping2018-01-042-4/+4
| | | | Notes: svn path=/head/; revision=458024
* Cleanup Mk/Uses/gnome.mk.Mathieu Arnold2018-01-031-1/+1
| | | | | | | | | | | | | | | | | - Remove the use of comp_DETECT. - Remove all comp_DETECT variables. - Remove a use of comp_DETECT outside of gnome.mk - Remove py3gobject3. - Have ports depending directly on devel/py-gobject3 use gnome to do it. PR: 224618 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Differential Revision: https://reviews.freebsd.org/D13550 Notes: svn path=/head/; revision=457964
* science/InsightToolkit: Modify patch to use ${CMAKE_DL_LIBS}Ben Woods2018-01-031-4/+4
| | | | | | | | | | | | | | ${CMAKE_DL_LIBS} expands to "" on FreeBSD where the dl functions are included in the Standard C library (libc), but to "dl" on operating systems where the dl functions are part of libdl. This change to the patch does not result in a change in contents of the resulting package. Reported by: jbeich Notes: svn path=/head/; revision=457958
* New USES=eigenTobias C. Berner2018-01-025-13/+9
| | | | | | | | | | | | | | | | | | | | | | | | | Usage: USES=eigen:<version>[,<type>] version: 2 or 3 (required) type: build (default), run For example: USES=eigen:2,build,run will add a BUILD- and RUN_DEPENDS on math/eigen2, and USES=eigen:3 will add a BUILD_DEPENDS on math/eigen3. * Convert the existing ports to use it - biology/iqtree: remove run time dependency (seemed not to be needed) - graphics/movit: remove run time dependency (seemed not to be needed) - science/avogadro: add run time dependeny (installed cmake file requires it to be present) Reviewed by: rakuco, mat Differential Revision: https://reviews.freebsd.org/D13702 Notes: svn path=/head/; revision=457914
* science/InsightToolkit: Fix build (r457496 accidentally excluded patch)Ben Woods2017-12-312-0/+28
| | | | Notes: svn path=/head/; revision=457666
* science/lamprop: Update to 3.4Luca Pizzamiglio2017-12-294-13/+21
| | | | | | | | PR: 221544 Submitted by: rsmith@xs4all.nl (maintainer) Notes: svn path=/head/; revision=457507
* science/InsightToolkit: Update to 4.13.0Ben Woods2017-12-293-7/+79
| | | | | | | | Changes this release: https://discourse.itk.org/t/itk-4-13-has-been-released/549 Notes: svn path=/head/; revision=457496
* Update to 1.25.0Sunpoet Po-Chuan Hsieh2017-12-273-4/+133
| | | | | | | Changes: https://software.ecmwf.int/wiki/display/GRIB/Latest+news Notes: svn path=/head/; revision=457390
* devel/google{test,mock}: update to 1.8.0.450Jan Beich2017-12-274-1/+4
| | | | | | | Changes: https://github.com/google/googletest/compare/f1a87d7...5490beb Notes: svn path=/head/; revision=457386
* science/libefp: Update to 1.5.0Yuri Victorovich2017-12-233-4/+6
| | | | | | | | | Reported by: portscout Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13598 Notes: svn path=/head/; revision=457098
* Update to 2.2.26Sunpoet Po-Chuan Hsieh2017-12-232-4/+4
| | | | | | | Changes: https://github.com/Unidata/UDUNITS-2/blob/master/CHANGE_LOG Notes: svn path=/head/; revision=457071
* e-added port: science/PETSc: Suite of data structures and routines from ↵Yuri Victorovich2017-12-215-0/+310
| | | | | | | | | | | | | | | | Argonne National Laboratory (existed 2004/11/21-2014/09/01, deleted in r366959) Replacing the identical version committed by me as a new port in r456696. The old math/petsc port also had a slave port math/petsc-mpich that has also been deleted. Original differential revision is https://reviews.freebsd.org/D13527 Submitted by: myself Reported by: thierry that math/petsc and math/petsc-mpich existed before Approved by: adamw (mentor) Notes: svn path=/head/; revision=456877
* Deleting science/PETSc: The previously-deleted port math/petsc exists. It ↵Yuri Victorovich2017-12-215-310/+0
| | | | | | | will be resurrected and this version will be committed with it. Notes: svn path=/head/; revision=456876
* Remove dependency on swigBaptiste Daroussin2017-12-201-3/+2
| | | | | | | | I can't find any direct call to the swig binary in the code meaning having swig as a run time dependency should not be a requirement Notes: svn path=/head/; revision=456834
* Switch from swig1.3 to swig 3.0Baptiste Daroussin2017-12-201-1/+2
| | | | Notes: svn path=/head/; revision=456786
* - Canonicalize LIB_DEPENDSAntoine Brodin2017-12-192-173/+173
| | | | | | | | | | | - Limit to python 2.7, the dependencies and the plist are not compatible with python3 - Cleanup plist With hat: portmgr (poudriere bulk -a broken) Notes: svn path=/head/; revision=456764
* Re-added port: science/py-pymol: OpenGL based molecular visualization system ↵Yuri Victorovich2017-12-197-0/+1108
| | | | | | | | | | (existed 2002/08/13-2014/09/01, deleted in r366862) Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D12902 Notes: svn path=/head/; revision=456763
* New port: science/MOOSE-neural-simulator: Multiphysics Object Oriented ↵Yuri Victorovich2017-12-196-0/+272
| | | | | | | | | | | | | | | | | | | | | Simulation Environment Multiphysics Object Oriented Simulation Environment MOOSE-neural-simulator allows to simulate - chemical and biochemical reactions - networks of neurons - neural networks This project is commonly referred to as MOOSE, in the capitalized form. There is another science project called MOOSE, completely unrelated to this one, which will also be ported. MOOSE-neural-simulator is a candidate for the future 'chemistry' category in case it will be approved. Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13539 Notes: svn path=/head/; revision=456732
* Mark more recently failing ports broken on aarch64.Mark Linimon2017-12-191-2/+3
| | | | | | | | | While here, pet portlint and reformat some other BROKEN statements. Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=456719
* New port: science/PETSc: Suite of data structures and routines from Argonne ↵Yuri Victorovich2017-12-196-0/+311
| | | | | | | | | | National Laboratory Approved by: adamw (mentor) Differential Revision: https://reviews.freebsd.org/D13527 Notes: svn path=/head/; revision=456696
* science/R-cran-fastICA: FastICA Algorithms to Perform ICA and Projection PursuitDavid Naylor2017-12-184-0/+25
| | | | | | | Generated by: portcran (0.1.7) Notes: svn path=/head/; revision=456626
* - Fix LICENSEDmitry Marakasov2017-12-182-2/+2
| | | | | | | | | - Update WWW Approved by: portmgr blanket Notes: svn path=/head/; revision=456602
* - Update to 1.1.0Wen Heping2017-12-162-5/+4
| | | | Notes: svn path=/head/; revision=456457
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