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* Rectify USE_TEX to support both of teTeX and TeXLive.Hiroki Sato2013-05-114-6/+5
| | | | | | | | | | | | TEX_DEFAULT: A knob to choose teTeX or TeXLive. One can specify in /etc/make.conf. USE_TEX: A knob for port developers. Valid keywords are listed in bsd.tex.mk. Notes: svn path=/head/; revision=317899
* - Update to 2.1.5 and [1]:Max Brazhnikov2013-05-113-7/+5
| | | | | | | | | | | - Allow to build with python3 - Simplify MASTER_SITES - Don't remove python shared directories Prompted by: rm [1] Notes: svn path=/head/; revision=317856
* Allow to build with python3Max Brazhnikov2013-05-112-4/+2
| | | | | | | | | | Simplify MASTER_SITES Don't remove python shared directories Prompted by: rm Notes: svn path=/head/; revision=317855
* - Update to 1.1.0Martin Wilke2013-05-104-149/+855
| | | | | | | | PR: 177935 Submitted by: Ports Fury Notes: svn path=/head/; revision=317808
* Convert USE_NCURSES by USES=ncursesBaptiste Daroussin2013-05-061-1/+1
| | | | | | | Convert USE_READLINE by USES=readline Notes: svn path=/head/; revision=317525
* Remove *_DEPENDS from ports which depend on teTeX and add USE_TEX=tetexHiroki Sato2013-05-064-7/+7
| | | | | | | instead to make migration to TeXLive easier. Notes: svn path=/head/; revision=317455
* Fix build with bmakeBaptiste Daroussin2013-05-041-7/+6
| | | | Notes: svn path=/head/; revision=317384
* Fix with bmake(1)Baptiste Daroussin2013-05-031-1/+1
| | | | Notes: svn path=/head/; revision=317182
* - Update to 1.22Wen Heping2013-04-302-9/+7
| | | | | | | | | | Changes: http://cpansearch.perl.org/src/PSANNES/Geo-BUFR-1.22/Changes - Trim Makefile headers - Add LICENSE - Reset maintainer to perl@ Notes: svn path=/head/; revision=316912
* - Update to version 1.0.4Martin Wilke2013-04-303-23/+45
| | | | | | | | PR: 177915 Submitted by: Ports Fury Notes: svn path=/head/; revision=316858
* Readd specific EXAMPLES description because of specific comment in itBaptiste Daroussin2013-04-291-0/+1
| | | | | | | Submitted by: kvm Notes: svn path=/head/; revision=316774
* Add missing descriptionBaptiste Daroussin2013-04-281-2/+1
| | | | Notes: svn path=/head/; revision=316759
* Convert science to new options frameworkBaptiste Daroussin2013-04-2812-132/+103
| | | | Notes: svn path=/head/; revision=316757
* - Convert USE_ICONV=yes to USES=iconvMarcus von Appen2013-04-276-12/+6
| | | | | | | | - Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig and USE_GETTEXT=yes to USES=gettext while here Notes: svn path=/head/; revision=316683
* - Convert USE_GETTEXT to USES (part 4)Alex Kozlov2013-04-262-4/+2
| | | | | | | Approved by: portmgr (bapt) Notes: svn path=/head/; revision=316596
* - Convert USE_GETTEXT to USES (part 3)Alex Kozlov2013-04-247-7/+7
| | | | | | | Approved by: portmgr (bapt) Notes: svn path=/head/; revision=316464
* - Convert USE_GETTEXT to USES (part 1)Alex Kozlov2013-04-243-6/+3
| | | | | | | Approved by: portmgr (bapt) Notes: svn path=/head/; revision=316407
* Finish converting the whole ports tree to USES=pkgconfigBaptiste Daroussin2013-04-234-6/+4
| | | | Notes: svn path=/head/; revision=316355
* - add new port: science/voro++Jason Helfman2013-04-165-0/+54
| | | | | | | | | | | | | | | | | | | | Voro++ is a software library for carrying out three-dimensional computations of the Voronoi tessellation. A distinguishing feature of the Voro++ library is that it carries out cell-based calculations, computing the Voronoi cell for each particle individually. It is particularly well-suited for applications that rely on cell-based statistics, where features of Voronoi cells (eg. volume, centroid, number of faces) can be used to analyze a system of particles. WWW: http://math.lbl.gov/voro++/ PR: 177678 Submitted by: jwbacon@tds.net Feature safe: yes Notes: svn path=/head/; revision=315916
* - Reset maintainer [1]Rene Ladan2013-04-161-8/+2
| | | | | | | | | | | | | | | While here: - convert Makefile header - pet portlint (including USE_GNOME=pkgconfig -> USE_PKGCONFIG=yes) - drop support for unsupported FreeBSD versions - convert to optionsNG Submitted by: previous maintainer (tkjacobsen@gmail.com) [1] in http://lists.freebsd.org/pipermail/freebsd-ports/2013-April/082815.html Feature safe: yes Notes: svn path=/head/; revision=315830
* - Does not build on 8.3-i386. Does build ok on 9.1-i386.Bryan Drewery2013-04-151-6/+5
| | | | | | | | | | | | | | | | ports/155546 may fix this. The issue is that the libtool linking stage is not respecting the CC=gcc46 environment that is used to compile the rest of the port first. This causes the linking to use 'cc' instead. .libs/ctl.o(.text.__i686.get_pc_thunk.bx+0x0): In function `__i686.get_pc_thunk.bx': : multiple definition of `__i686.get_pc_thunk.bx' /usr/lib/crtbeginS.o(.gnu.linkonce.t.__i686.get_pc_thunk.bx+0x0): first defined here *** Error code 1 Approved by: portmgr (implicit) Notes: svn path=/head/; revision=315805
* - Fix bad plist prevents packagingWen Heping2013-04-072-6/+1
| | | | | | | | | PR: 177609 Submitted by: John Marino <draco@marino.st> Approved by: portmgr(miwi@) Notes: svn path=/head/; revision=315753
* - update to 0.4eJason Helfman2013-04-072-5/+3
| | | | | | | | | | - unbreak as distfile is unversioned - future mismatches should be investigated as potential software updates Approved by: portmgr (erwin) Notes: svn path=/head/; revision=315750
* Fix plistMax Brazhnikov2013-04-032-0/+4
| | | | | | | Approved by: portmgr (miwi) Notes: svn path=/head/; revision=315701
* - Mark BROKEN checksum mismatchMartin Wilke2013-03-301-0/+2
| | | | | | | | Reported by: pointyhat Approved by: portmgr Notes: svn path=/head/; revision=315612
* Convert a few remaining straglers from the unmaintined ports to pathfixEitan Adler2013-03-281-1/+2
| | | | Notes: svn path=/head/; revision=315491
* Style: tab -> space.Eitan Adler2013-03-282-2/+2
| | | | | | | Most contributors copy an existing port when writing their own so reduce the number of bad examples in the tree. Notes: svn path=/head/; revision=315487
* - Rename pyBioLCCC to pyteomics.biolccc (follow upstream)Max Brazhnikov2013-03-288-33/+30
| | | | | | | | - Update to 1.5.0 - Trim Makefile header Notes: svn path=/head/; revision=315467
* Add new port science/pyteomics:Max Brazhnikov2013-03-285-0/+77
| | | | | | | | | | | | | | | | | | | | | Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis, such as: * calculation of basic physico-chemical properties of polypeptides: . mass and isotopic distribution . charge and pI . chromatographic retention time * access to common proteomics data: . MS or LC-MS data . FASTA databases . search engines output * easy manipulation of sequences of modified peptides and proteins WWW: https://pypi.python.org/pypi/pyteomics Notes: svn path=/head/; revision=315466
* Mechanically convert unmaintained ports which use "gnomehack" to use ↵Eitan Adler2013-03-281-1/+2
| | | | | | | "pathfix" instead. Notes: svn path=/head/; revision=315433
* update to 3.0wr-021113Brendan Fabeny2013-03-282-8/+4
| | | | Notes: svn path=/head/; revision=315424
* - Update to 0.3-12TAKATSU Tomonari2013-03-272-4/+3
| | | | Notes: svn path=/head/; revision=315413
* KDE/FreeBSD team presents KDE SC 4.10.1 ports!Max Brazhnikov2013-03-274-10/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | - kdegames4 port has been split. - kdeutils4-printer-applet and system-config-printer-kde have been replaced by print/kde4-print-manager. - Recover misc/kde4-l10n-mr from attic. - New USE_KDE4 components: kactivities, libkdegames, nepomuk-core, and nepomuk-widgets. - Provide sharedmime component with magic: ports don't need to run update-mime-database themselves now. - Switch some ports to out-of-source build. - Update port comments. - Adjust dependence on Qt4 components. - x11/kde4 installs modern kdepim4 now. - Remove redundant aspell and hspell from kdelibs4, both can be enabled in textproc/enchant if needed. - Remove stale bits from bsd.kde4.mk The area51 repository features commits by Schaich Alonso and myself. Contributors: - Tobias Berner Notes: svn path=/head/; revision=315373
* - Update to 4.6.1Martin Wilke2013-03-243-9/+16
| | | | | | | | PR: 177243 Submitted by: ports fury Notes: svn path=/head/; revision=315145
* - Update to 1.76.0Wen Heping2013-03-243-7/+44
| | | | Notes: svn path=/head/; revision=315121
* - convert USE_CMAKE to USESMax Brazhnikov2013-03-228-10/+8
| | | | | | | | | | - while here clean up some ports from CMAKE_VERBOSE, which is intended for users Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314960
* Mk/bsd.kde4.mk:Max Brazhnikov2013-03-222-2/+3
| | | | | | | | | | | | | - Don't set CMAKE_BUILD_TYPE for debug builds (cmake.mk already handles it) - Don't set WITH_DEBUG for unstable branch (KDE4_BRANCH) - Remove now useless KDE4_BUILDENV KDE SC ports: - Chase KDE4_BUILDENV removal: replace 'KDE4_BUILDENV= yes' with 'USES= cmake:outsource' and add USE_LDCONFIG if needed Notes: svn path=/head/; revision=314933
* Add an explicit dependency on pkgconfBaptiste Daroussin2013-03-221-0/+1
| | | | Notes: svn path=/head/; revision=314920
* Chase french/med upgrade.Thierry Thomas2013-03-192-12/+6
| | | | Notes: svn path=/head/; revision=314691
* This changes almost all the "gnomehack" only USE_GNOME cases to USES= pathfix.Eitan Adler2013-03-195-5/+5
| | | | | | | | | | | | If a port used other USE_GNOME items it was untouched. The ports that used other USES were fixed by hand. PR: ports/177081 Reviewed by: bapt Approved by: portmgr (miwi) Notes: svn path=/head/; revision=314640
* Fix minor nit: use the canconical FreeBSD.org form for email addresses.Eitan Adler2013-03-171-6/+2
| | | | | | | | | | | | This was causing me issues when attempting to gather certain statistics. While here trim header Approved by: miwi, adrian, tj No objection from: db, bjk, cperciva, scheidell, osa Notes: svn path=/head/; revision=314460
* In categories starting with [n-s], remove empty lines (and also few cases ofAlexey Dokuchaev2013-03-172-2/+0
| | | | | | | trailing slashes) from pkg-plist. Notes: svn path=/head/; revision=314445
* Generalize the BROKEN message to remove i386 referenceBryan Drewery2013-03-171-1/+1
| | | | Notes: svn path=/head/; revision=314444
* Unbreak on i386; builds fine.Bryan Drewery2013-03-171-1/+1
| | | | | | | Reported by: John Marino <draco@marino.st> Notes: svn path=/head/; revision=314437
* - Unbreak build with clangMartin Wilke2013-03-141-5/+2
| | | | | | | | | PR: i176346 Submitted by: Anton Shterenlikht <mexas@bristol.ac.uk> Approved by: maintainer timeout Notes: svn path=/head/; revision=314149
* - Convert to OptionsngMartin Wilke2013-03-141-9/+7
| | | | | | | - While here trim header Notes: svn path=/head/; revision=314144
* - Fix warning when building in a jailBryan Drewery2013-03-141-5/+2
| | | | | | | | | | | perl: not found "Makefile", line 28: warning: "perl -V:archname" returned non-zero status PR: ports/174576 Approved by: maintainer timeout (>2 months via email) Notes: svn path=/head/; revision=314124
* Update to version 0.13.1.Dmitry Sivachenko2013-03-113-25/+83
| | | | Notes: svn path=/head/; revision=313903
* update math/R to 2.15.3, and adjust dependent portsBrendan Fabeny2013-03-0710-8/+10
| | | | Notes: svn path=/head/; revision=313562
* - Please welcome back Chris Petrik as maintainer ofBryan Drewery2013-03-071-1/+1
| | | | | | | | | | | | | | these ports [1] - Trim headers - Remove indefinite article from COMMENT - Convert tab to space in WWW lines PR: ports/175415 [1] Submitted by: Chris Petrik <c.petrik.sosa@gmail.com> [1] Discussed with: bapt Notes: svn path=/head/; revision=313559