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* - Chase plplot shlib bumpPav Lucistnik2011-11-221-1/+2
| | | | | | | | | Reported by: pointyhat Missed by: miwi Feature safe: yes Notes: svn path=/head/; revision=286254
* Update to 0.12.10.Koop Mast2011-11-223-11/+14
| | | | | | | | | Chase both goffice and gnumeric updates. Feature safe: yes Notes: svn path=/head/; revision=286249
* adjust linking and comments in dependent ports after the math/atlas update;Brendan Fabeny2011-11-2210-39/+39
| | | | | | | | | | | math/atlas-devel will be updated to use the same constructs at a later date PR: 162706 Approved by: miwi (portmgr) Feature safe: yes Notes: svn path=/head/; revision=286242
* - Unbreak - fix build with latest x11-toolkits/fltkPietro Cerutti2011-11-172-5/+12
| | | | | | | Feature safe: yes Notes: svn path=/head/; revision=285953
* - Move PKGNAMEPREFIX defined in each R-cran- related ports MakefileTAKATSU Tomonari2011-11-155-5/+0
| | | | | | | | | | | | | | | | to Mk/bsd.cran.mk PR: ports/162238 Submitted by: tota (myself) Approved by: wen (maintainer of Mk/bsd.cran.mk and many related ports), David Naylor <naylor_DOT_b_DOT_david_AT_gmail_DOT_com> (maintainer of math/R-cran-RSvgDevice and math/R-cran-car), Dan Rue <drue_AT_therub_DOT_org> (maintainer of math/R-cran-psych, timeout > 2 weeks) Feature safe: yes Notes: svn path=/head/; revision=285871
* Remove CMAKE_USE_PTHREAD from the ports using it.Raphael Kubo da Costa2011-11-141-7/+1
| | | | | | | | | | | This setting has not had any effect since r1.13 to bsd.cmake.mk, as it was only useful when we supported FreeBSD < 7. Approved by: avilla (mentor), portmgr (miwi) Feature safe: yes Notes: svn path=/head/; revision=285744
* The KDE on FreeBSD team is pleased to update the KDE4 ports to 4.7.3.Raphael Kubo da Costa2011-11-142-4/+4
| | | | | | | | | | | | | | This is an incremental update and should be much easier to handle than the transition from 4.6.5 to 4.7.2 in the ports tree. The official release notes can be found at http://www.kde.org/announcements/announce-4.7.3.php. Approved by: avilla (mentor), makc (mentor), portmgr (miwi) Feature safe: yes Notes: svn path=/head/; revision=285739
* Upgrade to 0.9.2.Thierry Thomas2011-11-134-15/+43
| | | | | | | | | | Changelog at <https://downloads.sourceforge.net/project/gnudatalanguage/gdl/0.9.2/README?r=http%3A%2F%2Fgnudatalanguage.sourceforge.net%2Fdownloads.php> Feature safe: yes Notes: svn path=/head/; revision=285701
* Mark as broken on powerpc: does not compile.Mark Linimon2011-11-111-0/+4
| | | | | | | | Hat: portmgr Feature safe: yes Notes: svn path=/head/; revision=285516
* Mark broken on powerpc as well as sparc64. (In fact, on all the tier-2s.)Mark Linimon2011-11-101-2/+2
| | | | | | | Hat: portmgr Notes: svn path=/head/; revision=285419
* - Remove WITH_FBSD10_FIX, is no longer neededMartin Wilke2011-11-095-5/+0
| | | | Notes: svn path=/head/; revision=285379
* - Mark BROKEN: does not compile with new fltkPav Lucistnik2011-11-041-0/+2
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=285056
* - Update to 0.7.2Wen Heping2011-11-033-116/+196
| | | | Notes: svn path=/head/; revision=284977
* Remove ports@ ports that have been DEPRECATED for at least 1 monthDoug Barton2011-11-026-144/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | audio/shoutcast Unfetchable; website rearranged audio/linux-shoutcast Unfetchable; website rearranged chinese/scim-chewing Does not configure converters/py-cjkcodecs Integrated into every python version in the tree databases/kpogre Does not compile deskutils/mhc Does not fetch deskutils/org-mode.el6 Does not fetch deskutils/gemcal Does not fetch devel/erlang-thrift Does not build dns/domtools Does not fetch editors/richtext Does not compile games/vultures-claw Does not fetch games/bomb Does not fetch games/lgeneral-data Bad plist games/linux-enemyterritory-jaymod Does not fetch games/xphotohunter Does not fetch graphics/gimpshop Fails to patch graphics/lightspark-devel Does not compile graphics/xmms-plazma Does not fetch graphics/py-cgkit Does not fetch, does not compile on ia64, powerpc, or sparc64 japanese/rxvt Does not fetch, fails to build with new utmpx japanese/epic4 Some distfiles do not fetch java/jde Does not fetch java/kaffe Does not fetch korean/gdick HTMLs from the Yahoo! Korea Dictionary cannot be parsed, other runtime problems korean/hanterm-xf86 Does not compile korean/stardict2-dict-kr Does not fetch lang/p5-JavaScript Does not fetch lang/TenDRA Website disappeared; last release 2006, Does not compile on recent FreeBSD-9 mail/freepops Does not build mail/itraxp Does not build misc/tellico Leaves file behind on deinstall net/gsambad Does not fetch net/nocatauth-gateway Uses a UID registered to another port net/nocatauth-server Uses a UID registered to another port net/libosip2 Does not fetch net/kmuddy Does not fetch net/netboot Does not build net-mgmt/jffnms Does not fetch net-p2p/frostwire Does not fetch net-p2p/azureus Does not fetch news/cleanscore Does not fetch news/nntpswitch Does not fetch news/p5-NewsLib Does not fetch russian/cyrproxy Does not fetch science/gerris Does not fetch security/opensaml Does not fetch sysutils/wmbattery Does not fetch sysutils/cpuburn No more public distfiles textproc/tei-guidelines-p4 Does not fetch textproc/tei-p4 Does not fetch textproc/py-hyperestraier Does not fetch textproc/tdtd.el Does not fetch textproc/tei-lite Does not fetch www/phpwiki13 Does not fetch www/p5-Apache-Scoreboard Depends on mod_perl www/p5-B-LexInfo Broken due the new mod_perl2 API www/phpwiki Does not fetch www/smb2www Apache13 is deprecated, migrate to 2.2.x+ now www/spip Checksum is changing daily www/monkey Does not fetch x11-toolkits/jdic Does not fetch x11-toolkits/py-kde Does not compile Notes: svn path=/head/; revision=284893
* - Update to 1.5.3Sunpoet Po-Chuan Hsieh2011-11-012-4/+4
| | | | | | | Changes: https://code.zmaw.de/news/85 Notes: svn path=/head/; revision=284844
* - Mark BROKEN: does not compilePav Lucistnik2011-10-311-0/+2
| | | | | | | | | ./3rdparty/Eigen/src/Core/util/Memory.h:302:13: error: 'ptrdiff_t' does not name a type Reported by: pointyhat Notes: svn path=/head/; revision=284808
* Add patch from upstream to fix build on i386Max Brazhnikov2011-10-311-0/+11
| | | | | | | Reported by: erwin/pointyhat Notes: svn path=/head/; revision=284785
* - Fix build on FreeBSD 10Martin Wilke2011-10-291-0/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=284620
* - Fix build on FreeBSD 10Martin Wilke2011-10-292-0/+2
| | | | Notes: svn path=/head/; revision=284615
* - Fix build with FreeBSD 10Martin Wilke2011-10-291-0/+1
| | | | Notes: svn path=/head/; revision=284614
* - Fix build on FreeBSD 10Martin Wilke2011-10-291-0/+1
| | | | | | | Reported by: pointyhat Notes: svn path=/head/; revision=284613
* - Update to 0.9.8Wen Heping2011-10-262-4/+4
| | | | Notes: svn path=/head/; revision=284324
* The vast majority of pkg-descr files had the following format when theyDoug Barton2011-10-247-6/+7
| | | | | | | | | | | | | | | | | | | had both lines: Author: ... WWW: .... So standardize on that, and move them to the end of the file when necessary. Also fix some more whitespace, and remove more "signature tags" of varying forms, like -- name, etc. s/AUTHOR/Author/ A few other various formatting issues Notes: svn path=/head/; revision=284239
* Remove more tags from pkg-descr files fo the form:Doug Barton2011-10-244-12/+1
| | | | | | | | | | | - Name em@i.l or variations thereof. While I'm here also fix some whitespace and other formatting errors, including moving WWW: to the last line in the file. Notes: svn path=/head/; revision=284232
* Update to 2.0.4Max Brazhnikov2011-10-205-106/+61
| | | | Notes: svn path=/head/; revision=283996
* - add run time dependency on py-scipyEitan Adler2011-10-201-1/+2
| | | | | | | | | | PR: ports/161472 Submitted by: Sergey Svishchev <svs@ropnet.ru> Approved by: "Li-Lun \"Leland\" Wang" <llwang@infor.org> Approved by: bapt,sahil (mentors, implicit) Notes: svn path=/head/; revision=283950
* Build fix for recent update of USE_FORTRAN toMaho Nakata2011-10-183-6/+7
| | | | | | | using gcc46. Notes: svn path=/head/; revision=283731
* - update fftw3* to 3.3 [1], and adjust dependent portsBrendan Fabeny2011-10-174-9/+10
| | | | | | | | | | - make use of optimizations by default, where possible (quad flavor to follow shortly, and mpi at a later date) Suggestions and patches from: ache, C. Burns, wen Notes: svn path=/head/; revision=283695
* The KDE/FreeBSD team is pleased to announce KDE Software CompilationAlberto Villa2011-10-179-0/+651
| | | | | | | | | | | | | | | | | | | | | 4.7.2. The official release notes can be found at: http://kde.org/announcements/announce-4.7.2.php This release ships with many improvements. Read more about them here: http://FreeBSD.kde.org/news.php#itemKDESC472availableinports We'd like to say thanks to all testers and contributors, especially to lwhsu@ for his effort on hosting our test packages. PR: 156293 [1] 159219 [2] 160164 [3] Submitted by: Oleg Sidorkin <osidorkin@gmail.com> [1] Alvaro Castillo <gobledb@gmail.com> [2] dkeav04@gmail.com [3] Tested by: exp-run via pav Notes: svn path=/head/; revision=283641
* update math/R to 2.13.2, and adjust dependent portsBrendan Fabeny2011-10-115-2/+5
| | | | Notes: svn path=/head/; revision=283375
* Update ImageMagick to 6.7.2-10 (shlib bumped to .5)Martin Matuska2011-10-111-2/+2
| | | | Notes: svn path=/head/; revision=283359
* Remove ports maintainted by ports@ which have passed their EXPIRATION_DATEDoug Barton2011-10-0915-667/+0
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | astro/gkrellsun Abandonware astro/xrmap No more distfiles audio/midimountain Abandonware audio/gkrellmss Abandonware audio/gnapster Abandonware databases/xbase No more public distfiles databases/xbsql No more public distfiles games/gtkabale No more public distfiles games/battleball No more public distfiles, does not compile on ia64 or sparc64 games/race No more public distfiles games/stvef-paks No more public distfiles games/stvef-server No more public distfiles games/tome No more public distfiles games/qkmj No more public distfiles games/oilwar No more public distfiles games/xbaby No more public distfiles games/xword Abandonware games/kslide No more public distfiles graphics/xmrm No more public distfiles, does not compile on amd64 or sparc64 graphics/giftrans Upstream disappeared and distfile is not available graphics/wildmagic BROKEN for more than 6 months, does not fetch irc/ircd-rusnet No more public distfiles irc/tkirc No more public distfiles korean/mizifont No more public distfiles lang/freetxl No more public distfiles math/nsc2ke No more public distfiles misc/mgp-mode.el No more public distfiles multimedia/p5-RIFF-Info No more public distfiles net/p5-Net-OpenDHT No more public distfiles net/mudix No more public distfiles net-im/newsbot No more public distfiles net-im/libicq2000 Abandonware net-im/gossip No longer maintain by upstream, use net-im/empathy instead net-im/ickle Abandonware net-mgmt/nipper BROKEN for more than 6 month, does not fetch net-p2p/mldonkey-serverspy No more public distfiles news/p5-Gateway No more public distfiles print/epsmerge No more public distfiles science/at No more public distfiles science/pyvox No more public distfiles security/p5-Email-Obfuscate No more public distfiles security/libparanoia No more public distfiles security/execwrap No more public distfiles Notes: svn path=/head/; revision=283226
* Remove optional dependency on graphics/giftrans, which is about to be removedDoug Barton2011-10-091-6/+1
| | | | Notes: svn path=/head/; revision=283222
* fix distinfo, the distfile was rerolled. Nothing major, mostly spelling fixes.Florian Smeets2011-10-021-2/+2
| | | | | | | Reported by: pav, erwin Notes: svn path=/head/; revision=282784
* eco is a publicly available R package that implements the BayesianWen Heping2011-09-284-0/+29
| | | | | | | | | | | and likelihood methods proposed in Imai, Lu, and Strauss (2008) for ecological inference in $2 \times 2$ tables as well as the method of bounds introduced by Duncan and Davis (1953). WWW: http://imai.princeton.edu/software/eco.html Notes: svn path=/head/; revision=282557
* - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS)Dmitry Marakasov2011-09-2327-48/+45
| | | | | | | | | | | | - Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead PR: 157936 Submitted by: myself Exp-runs by: pav Approved by: pav Notes: svn path=/head/; revision=282282
* - Reassign to the heapThomas Abthorpe2011-09-211-1/+1
| | | | Notes: svn path=/head/; revision=282132
* - update to 4.5.5Florian Smeets2011-09-203-9/+15
| | | | | | | - drop FreeBSD 6.x support Notes: svn path=/head/; revision=282072
* Remove a special configuration for versions of FreeBSD before 7.0Gerald Pfeifer2011-09-181-4/+0
| | | | | | | | | to use g77 as the Fortran compiler. Approved by: maintainer timeout Notes: svn path=/head/; revision=281959
* - Add a new port: science/R-cran-DClusterTAKATSU Tomonari2011-09-184-0/+32
| | | | | | | | | | | A set of functions for the detection of spatial clusters of disease using count data. Bootstrap is used to estimate sampling distributions of statistics. WWW: http://cran.r-project.org/web/packages/DCluster/ Notes: svn path=/head/; revision=281930
* - Add a new port: science/R-cran-EpiTAKATSU Tomonari2011-09-174-0/+30
| | | | | | | | | | | | | Functions for demographic and epidemiological analysis in the Lexis diagram, i.e. register and cohort follow-up data, including interval censored data and representation of multistate data. Also some useful functions for tabulation and plotting. Contains some epidemiological datasets. WWW: http://www.pubhealth.ku.dk/~bxc/Epi/ Notes: svn path=/head/; revision=281881
* - Update to 2.1.24Sunpoet Po-Chuan Hsieh2011-09-162-3/+3
| | | | | | | | | | | | | Changes: - Removed superfluous "the" from library documentation. - Added (against my better judgement) symbols "ppm", "ppb", "ppt", "ppq", and (shamefully) symbols "ppmv", "ppbv", "pptv", and "ppqv" to the "common" units database. - Improved ut_decode_time(): the returned "seconds" value will now always be less than 60. Thanks Christian. Notes: svn path=/head/; revision=281849
* Change maintainer address to my FreeBSD addressCarlo Strub2011-09-152-2/+2
| | | | | | | Approved by: wen@ (mentor) Notes: svn path=/head/; revision=281802
* I forgot to remove unncessary patch..Maho Nakata2011-09-121-64/+0
| | | | | | | Pointed out by: bf, erwin and pav Notes: svn path=/head/; revision=281698
* - Mark broken on some versions of FreeBSD (libtool error).Stephen Montgomery-Smith2011-09-071-0/+6
| | | | | | | Approved by: (maho, implicit) Notes: svn path=/head/; revision=281380
* Update to 1.4.0 and unbreak for 8-exp gcc46 run.Maho Nakata2011-09-074-9/+26
| | | | | | | | Patch kindly sent by: bf Discssed with: gerald Notes: svn path=/head/; revision=281340
* - Fix paths in installed CMake modules.Alberto Villa2011-09-061-3/+2
| | | | | | | | | - Bump PORTREVISION. Approved by: Troels Kofoed Jacobsen (maintainer) via e-mail Notes: svn path=/head/; revision=281329
* - Update to 3.1.0Dennis Herrmann2011-09-062-3/+4
| | | | | | | | PR: ports/160515 Submitted by: Veniamin Gvozdikov <g.veniamin@googlemail.com> (maintainer) Notes: svn path=/head/; revision=281305
* - Move preprocessor options back to CPPFLAGSSunpoet Po-Chuan Hsieh2011-09-011-2/+3
| | | | | | | Suggested by: danfe, sahil Notes: svn path=/head/; revision=280962
* Mark as broken on recent i386-9: does not compile.Mark Linimon2011-08-291-0/+2
| | | | Notes: svn path=/head/; revision=280672