aboutsummaryrefslogtreecommitdiff
path: root/science
Commit message (Collapse)AuthorAgeFilesLines
* - Update to 2.6.1Wen Heping2010-06-102-5/+4
| | | | | | | | PR: ports/147743 Submitted by: Rob Farmer <rfarmer@predatorlabs.net> (maintainer) Notes: svn path=/head/; revision=256310
* Chase goffice update.Koop Mast2010-06-081-2/+2
| | | | Notes: svn path=/head/; revision=256110
* - Update to 0.6.4Philip M. Gollucci2010-06-082-4/+4
| | | | Notes: svn path=/head/; revision=256059
* - Fix buildMartin Wilke2010-06-062-1/+16
| | | | | | | | PR: 146745 Submitted by: Stas Timokhin <devel@stasyan.com> (maintainer) Notes: svn path=/head/; revision=255883
* LICENSE GPLv2Dirk Meyer2010-06-052-1/+3
| | | | Notes: svn path=/head/; revision=255828
* Update to 3.8.0Max Brazhnikov2010-06-0512-530/+636
| | | | | | | | PR: ports/147266 Submitted by: Stas Timokhin (maintainer) Notes: svn path=/head/; revision=255779
* LICENSE LGPL21Dirk Meyer2010-06-051-0/+2
| | | | Notes: svn path=/head/; revision=255744
* Don't build packages for this on the Tier-2 archs; we simply don'tMark Linimon2010-06-041-0/+4
| | | | | | | | | | have enough power on the nodes, and this winds up slowing down our builds. Hat: portmgr Notes: svn path=/head/; revision=255702
* - Update to 11.8.24Wen Heping2010-06-033-4/+6
| | | | Notes: svn path=/head/; revision=255640
* Bounce PORTREVISION for gettext-related ports. Have fun, ya'll.Ade Lovett2010-05-3110-6/+10
| | | | Notes: svn path=/head/; revision=255371
* - drop USE_GNUSTEP_PREFIXDirk Meyer2010-05-304-330/+328
| | | | Notes: svn path=/head/; revision=255316
* - Fix mansWen Heping2010-05-273-6/+32
| | | | | | | | | | - Remove USE_LDCONFIG PR: ports/146795 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com> (maintainer) Notes: svn path=/head/; revision=255166
* - Pass maintainership to haskell@FreeBSD.org:Giuseppe Pilichi2010-05-261-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | audio/hs-ALUT, audio/hs-OpenAL, benchmarks/hs-criterion converters/hs-json, devel/hs-DeepArrow, devel/hs-FileManip devel/hs-MemoTrie, devel/hs-MissingH, devel/hs-MonadCatchIO-mtl devel/hs-ObjectName, devel/hs-QuickCheck, devel/hs-StateVar devel/hs-Tensor, devel/hs-TypeCompose, devel/hs-arrows devel/hs-checkers, devel/hs-convertible, devel/hs-datetime devel/hs-deepseq, devel/hs-fgl, devel/hs-ghc-mtl, devel/hs-ghc-paths devel/hs-ghc-paths-docs, devel/hs-haskeline devel/hs-haskell-src-exts, devel/hs-hint, devel/hs-hoogle devel/hs-hslogger, devel/hs-mmap, devel/hs-mueval, devel/hs-reactive devel/hs-readline, devel/hs-safe, devel/hs-show, devel/hs-smallcheck devel/hs-split, devel/hs-testpack, devel/hs-transformers devel/hs-unamb, devel/hs-uniplate, devel/hs-unix-compat devel/hs-utility-ht, devel/hs-uuagc, devel/hs-uulib devel/hs-uvector, devel/hs-uvector-algorithms, graphics/hs-HGL lang/hs-brainfuck, lang/hs-unlambda, mail/hs-mime, math/hs-Agda math/hs-Agda-executable, math/hs-category-extras, math/hs-erf math/hs-mwc-random, math/hs-probability, math/hs-statistics math/hs-vector-space, print/hs-hscolour, print/hs-hscolour-docs science/hs-bio, textproc/hs-Diff, textproc/hs-feed textproc/hs-tagsoup, textproc/hs-texmath, textproc/hs-xml www/hs-HTTP, www/hs-cgi, www/hs-fastcgi, www/hs-http-server www/hs-oeis, www/hs-scgi, www/hs-url, x11-toolkits/hs-GLURaw x11-toolkits/hs-OpenGLRaw Approved by: pgj (mentor) Notes: svn path=/head/; revision=255117
* Force WITH_FFTW3 when PACKAGE_BUILDING, in order to avoid changing theThierry Thomas2010-05-251-1/+1
| | | | | | | | | dependencies during the build. Reported by: pointyhat via Pav Notes: svn path=/head/; revision=255088
* - Update to 1.4.4Li-Wen Hsu2010-05-232-5/+5
| | | | | | | | PR: ports/146861 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=254882
* Add optional dependency on kdebase3Max Brazhnikov2010-05-222-4/+14
| | | | Notes: svn path=/head/; revision=254847
* Chase devel/goffice update.Koop Mast2010-05-211-2/+2
| | | | Notes: svn path=/head/; revision=254764
* - Fix build, abinit builds with science/netcdf3-ftnLi-Wen Hsu2010-05-201-2/+2
| | | | | | | | | Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> Approved by: maho Notified by: pav Notes: svn path=/head/; revision=254650
* - Since we have netcdf3-ftn, remove netcdf3 part from Makefile.Li-Wen Hsu2010-05-201-8/+1
| | | | | | | | Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> kVS: ---------------------------------------------------------------------- Notes: svn path=/head/; revision=254649
* Add netcdf3-ftn , netCDF (network Common Data Form), with FortranLi-Wen Hsu2010-05-202-0/+19
| | | | | | | | | support. Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> Notes: svn path=/head/; revision=254647
* - Fix build problem caused by the recent textproc/hs-tagsoup updateGabor Pali2010-05-203-2/+65
| | | | | | | | | | | - Port PORTREVISION - Tidy up pkg-descr Reported by: LambdaBSD-exp Approved by: jacula (maintainer) Notes: svn path=/head/; revision=254641
* The massXpert project aims at providing (bio)chemists with a softwareWen Heping2010-05-205-0/+277
| | | | | | | | | | | | | | | | | | | | | | | | | | package allowing the following: * User-specific atom definitions and polymer chemistry definitions; * Powerful sequence editing with user-defined glyphs for each monomer and monomer chemical modification. Multi-region selections; * Polymer sequence chemical/enzymatic cleavage; * Intramolecular cross-linking, like disulfide bonds with total resolution of the peptides generated upon enzymatic cleavage; * Gas-phase fragmentation of oligomers; * Mass-to-charge ratio calculations with inline change of ionization agent; * Calculation of net electrical charge and of isoelectric point (even by taking into account monomer modifications if polymer is a protein); * Simulation of isotopic patterns for any chemical formula and z charge; * A number of plugins allow 1) translation of the sequence from one format to another (using a dictionary, like between the 1-letter code and the 3-letter code of proteins) 2) conversion of number format according to any localized number format 3) sort mass lists. PR: ports/146564 Submitted by: Gvozdikov Veniamin <g.veniamin@googlemail.com> Notes: svn path=/head/; revision=254638
* PyNN(pronounced 'pine') is a simulator-independent language forWen Heping2010-05-195-0/+171
| | | | | | | | | building neuronal network models. WWW: http://neuralensemble.org/trac/PyNN Notes: svn path=/head/; revision=254576
* - Remove pyNN and re-add as pynnWen Heping2010-05-195-171/+0
| | | | | | | Reviewed by: danfe@ Notes: svn path=/head/; revision=254573
* PyNN(pronounced 'pine') is a simulator-independent language forWen Heping2010-05-185-0/+171
| | | | | | | | | | | | building neuronal network models. WWW: http://neuralensemble.org/trac/PyNN PR: ports/146664 Submitted by: Ju Pengfei <jupengfei@gmail.com> Notes: svn path=/head/; revision=254547
* - Fix duplicated LATEST_LINKLi-Wen Hsu2010-05-152-1/+3
| | | | | | | | PR: ports/146620 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=254359
* - Add netcdf 4.x supportLi-Wen Hsu2010-05-151-1/+8
| | | | | | | | PR: ports/146416 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=254343
* - Add option FORTRANLi-Wen Hsu2010-05-152-18/+37
| | | | | | | | | | | | - Recall SZIP, fix typo (LIB_DEPEND -> LIB_DEPENDS) - Sort pkg-plist - Space/Tab twiddle PR: 146416 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=254342
* - Update MASTER_SITESLi-Wen Hsu2010-05-153-62/+14
| | | | | | | | | | | | | - Simplify NOPORTDOCS patch - Remove NOPORTEXAMPLES section - Remove unnecessary post-install: target - Remove patch for fortran/cfortran.h PR: ports/146415 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=254341
* - Update to 3.3.0Wen Heping2010-05-132-5/+5
| | | | | | | - Reset maintainer Notes: svn path=/head/; revision=254249
* Introduce a new (and hopefully better) ports infrastructure for Haskell CabalGabor Pali2010-05-122-125/+59
| | | | | | | | | ports which makes possible the direct translation of Cabal package descriptions to FreeBSD ports. It promises both easier addition and maintenance for Cabal-based ports. Notes: svn path=/head/; revision=254209
* Bddsolve is a BDD-based tool for solving satisfiability and reachabilityBeat Gaetzi2010-05-125-0/+50
| | | | | | | | | | | problems. It uses the BDD package Buddy as a backend. WWW: http://www.win.tue.nl/~wieger/bddsolve/ Submitted by: ed@ Notes: svn path=/head/; revision=254196
* Presenting GNOME 2.30.1 for FreeBSD. The offical release notes for thisKoop Mast2010-05-101-0/+18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | release can be found at http://library.gnome.org/misc/release-notes/2.30/ . This release brings initial PackageKit support, Upower (replaces power management part of hal), cuse4bsd integration with HAL and cheese, and a faster Evolution. Sadly GNOME 2.30.x will be the last release with FreeBSD 6.X support. This will also be the last of the 2.x releases. The next release will be the highly-anticipated GNOME 3.0 which will bring with it a new UI experience. Currently, there are a few bugs with GNOME 2.30 that may be of note for our users. Be sure to consult the UPGRADING note or the 2.30 upgrade FAQ at http://www.freebsd.org/gnome/docs/faq230.html for specific upgrading instructions, and the up-to-date list of known issues. This release features commits by avl, ahze, bland, marcus, mezz, and myself. The FreeBSD GNOME Team would like to thank Anders F Bjorklund for doing the initual packagekit porting. And the following contributors & testers for there help with this release: Eric L. Chen Vladimir Grebenschikov Sergio de Almeida Lenzi DomiX walder crsd Kevin Oberman Michal Varga Pavel Plesov Bapt kevin and ITetcu for two exp-run PR: ports/143852 ports/145347 ports/144980 ports/145830 ports/145511 Notes: svn path=/head/; revision=254099
* - Fixed WWW: linkGreg Larkin2010-05-051-1/+1
| | | | | | | Submitted by: sunpoet@sunpoet.net (via email) Notes: svn path=/head/; revision=253758
* - Update to 1.4.3Li-Wen Hsu2010-05-054-18/+25
| | | | | | | | | | - Update MASTER_SITES, WWW PR: ports/146326 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet AT sunpoet.net> (maintainer) Notes: svn path=/head/; revision=253743
* - Added missing pkg-plist entryGreg Larkin2010-05-041-0/+1
| | | | | | | Reported by: QAT Notes: svn path=/head/; revision=253698
* - Update to 1.8.4Greg Larkin2010-05-042-9/+16
| | | | | | | | | PR: ports/144782 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> Approved by: koziol@hdfgroup.org (maintainer, implicit, timeout - 49 days) Notes: svn path=/head/; revision=253694
* - Mark BROKEN on sparc64Pav Lucistnik2010-05-041-0/+4
| | | | | | | | PR: ports/146127 Submitted by: Chris Petrik <chris@officialunix.com> (maintainer) Notes: svn path=/head/; revision=253679
* Trying to chase Zlib's upgrade in -CURRENT.Thierry Thomas2010-05-011-0/+24
| | | | | | | | Reported by: pointyhat via droso Seen with: delphij Notes: svn path=/head/; revision=253504
* - Update to 1.0.0Cheng-Lung Sung2010-04-283-10/+26
| | | | | | | | PR: ports/144129 Submitted by: maintainer (Shin'ya Murakami) Notes: svn path=/head/; revision=253370
* - Update to 0.7.2Wen Heping2010-04-262-4/+4
| | | | | | | | | PR: ports/146008 Submitted by: Wen Heping (myself) Approved by: maintainer Notes: svn path=/head/; revision=253273
* Upgrade to 3.5.1.Thierry Thomas2010-04-252-5/+4
| | | | | | | | Changelog at <http://www-drfmc.cea.fr/sp2m/L_Sim/V_Sim/changelog.en.html#3.5.1>. Notes: svn path=/head/; revision=253242
* Update to 1.9.1Max Brazhnikov2010-04-258-14/+104
| | | | Notes: svn path=/head/; revision=253217
* - Update to 4.1.1Wen Heping2010-04-224-33/+51
| | | | | | | | PR: ports/145923 Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net> (maintainer) Notes: svn path=/head/; revision=253045
* - Update to 0.53Cheng-Lung Sung2010-04-203-19/+4
| | | | Notes: svn path=/head/; revision=252940
* - Update to 0.9.1Wen Heping2010-04-112-4/+4
| | | | Notes: svn path=/head/; revision=252568
* - Requires GCC 4.x only if we are on 6.xRong-En Fan2010-04-071-2/+7
| | | | | | | | PR: ports/145255 Submitted by: Chris Petrik <chris at officialunix.com> (maintainer) Notes: svn path=/head/; revision=252358
* - Update to 0.25Sylvio Cesar Teixeira2010-04-052-4/+4
| | | | | | | | | PR: ports/145350 Submitted by: Steve Wills <steve@mouf.net> (maintainer) Approved by: itetcu (mentor, implicit) Notes: svn path=/head/; revision=252288
* Update to 2.91 which includes a new rewritten Python interfaceRong-En Fan2010-04-056-32/+14
| | | | Notes: svn path=/head/; revision=252232
* - Chase math/vtk5 updatePietro Cerutti2010-04-032-3/+3
| | | | Notes: svn path=/head/; revision=252132