From f30ad7580d7a6f3c5dab9d8077303c626f666103 Mon Sep 17 00:00:00 2001 From: Edwin Groothuis Date: Sat, 24 May 2008 07:01:56 +0000 Subject: New port: biology/consed viewing and editing workbench for sequence assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki --- biology/Makefile | 1 + 1 file changed, 1 insertion(+) (limited to 'biology/Makefile') diff --git a/biology/Makefile b/biology/Makefile index 3c4484cea3a9..a5d67b95304e 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -64,6 +64,7 @@ SUBDIR += p5-bioperl-run SUBDIR += p5-bioperl-run-devel SUBDIR += paml + SUBDIR += phd2fasta SUBDIR += phylip SUBDIR += platon SUBDIR += povchem -- cgit v1.2.3