From 2cb934bb50938e9cecf714632e48b43bb1a083be Mon Sep 17 00:00:00 2001 From: Emanuel Haupt Date: Sat, 15 Oct 2005 20:09:50 +0000 Subject: Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for NCBI Entrez Gene. PR: 87423 Submitted by: Mauricio Herrera Cuadra Approved by: novel (mentor) (implicit) --- biology/p5-Bio-ASN1-EntrezGene/Makefile | 34 ++++++++++++++++++++++++++++++++ biology/p5-Bio-ASN1-EntrezGene/distinfo | 2 ++ biology/p5-Bio-ASN1-EntrezGene/pkg-descr | 12 +++++++++++ biology/p5-Bio-ASN1-EntrezGene/pkg-plist | 12 +++++++++++ 4 files changed, 60 insertions(+) create mode 100644 biology/p5-Bio-ASN1-EntrezGene/Makefile create mode 100644 biology/p5-Bio-ASN1-EntrezGene/distinfo create mode 100644 biology/p5-Bio-ASN1-EntrezGene/pkg-descr create mode 100644 biology/p5-Bio-ASN1-EntrezGene/pkg-plist (limited to 'biology/p5-Bio-ASN1-EntrezGene') diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile new file mode 100644 index 000000000000..05378930aa0b --- /dev/null +++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile @@ -0,0 +1,34 @@ +# New ports collection makefile for: biology/p5-Bio-ASN1-EntrezGene +# Date created: 12 October 2005 +# Whom: Mauricio Herrera Cuadra +# +# $FreeBSD$ +# + +PORTNAME= Bio-ASN1-EntrezGene +PORTVERSION= 1.091 +CATEGORIES= biology perl5 +MASTER_SITES= ${MASTER_SITE_PERL_CPAN} +MASTER_SITE_SUBDIR= Bio +PKGNAMEPREFIX= p5- +EXTRACT_SUFX= .tgz + +MAINTAINER= mauricio@arareko.net +COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene + +WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09 + +PERL_CONFIGURE= yes + +MAN3= Bio::ASN1::EntrezGene.3 \ + Bio::ASN1::EntrezGene::Indexer.3 \ + Bio::ASN1::Sequence.3 \ + Bio::ASN1::Sequence::Indexer.3 + +.include + +.if ${PERL_LEVEL} < 500600 +IGNORE= requires at least perl5.6 to build +.endif + +.include diff --git a/biology/p5-Bio-ASN1-EntrezGene/distinfo b/biology/p5-Bio-ASN1-EntrezGene/distinfo new file mode 100644 index 000000000000..e7a08e192253 --- /dev/null +++ b/biology/p5-Bio-ASN1-EntrezGene/distinfo @@ -0,0 +1,2 @@ +MD5 (Bio-ASN1-EntrezGene-1.091.tgz) = fabb888e03435007e08050def1aed0ac +SIZE (Bio-ASN1-EntrezGene-1.091.tgz) = 36360 diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg-descr b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr new file mode 100644 index 000000000000..1e01411c8adb --- /dev/null +++ b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr @@ -0,0 +1,12 @@ +Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez +Gene genome databases (http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It +parses an ASN.1-formatted Entrez Gene record and returns a data structure that +contains all data items from the gene record. + +The parser will report error & line number if input data does not conform to the +NCBI Entrez Gene genome annotation file format. + +WWW: http://search.cpan.org/dist/Bio-ASN1-EntrezGene/ + +- Mauricio +mauricio@arareko.net diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg-plist b/biology/p5-Bio-ASN1-EntrezGene/pkg-plist new file mode 100644 index 000000000000..c69aaacde5d6 --- /dev/null +++ b/biology/p5-Bio-ASN1-EntrezGene/pkg-plist @@ -0,0 +1,12 @@ +%%SITE_PERL%%/Bio/ASN1/EntrezGene.pm +%%SITE_PERL%%/Bio/ASN1/EntrezGene/Indexer.pm +%%SITE_PERL%%/Bio/ASN1/Sequence.pm +%%SITE_PERL%%/Bio/ASN1/Sequence/Indexer.pm +%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1/EntrezGene/.packlist +@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1/EntrezGene +@unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1 2>/dev/null || true +@unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio 2>/dev/null || true +@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1/EntrezGene 2>/dev/null || true +@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1/Sequence 2>/dev/null || true +@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1 2>/dev/null || true +@unexec rmdir %D/%%SITE_PERL%%/Bio 2>/dev/null || true -- cgit v1.2.3