From c5ae7593d1dd5d3571f684b4755c7ab214ec8568 Mon Sep 17 00:00:00 2001 From: Sergey Matveychuk Date: Wed, 9 Nov 2005 11:16:04 +0000 Subject: - Update to 0.90 - Change maintainer e-mail - Mark BROKEN on 4.x PR: ports/87275 Submitted by: maintainer --- math/jags/Makefile | 25 +++--- math/jags/distinfo | 12 +-- math/jags/files/patch-src-lib-model-Model.cc | 19 ----- math/jags/files/patch-src-terminal-parser.yy | 10 --- math/jags/pkg-descr | 4 +- math/jags/pkg-plist | 115 +++++++++++++++++---------- 6 files changed, 94 insertions(+), 91 deletions(-) delete mode 100644 math/jags/files/patch-src-lib-model-Model.cc delete mode 100644 math/jags/files/patch-src-terminal-parser.yy (limited to 'math/jags') diff --git a/math/jags/Makefile b/math/jags/Makefile index 7d51506eae31..dfdc10179a79 100644 --- a/math/jags/Makefile +++ b/math/jags/Makefile @@ -1,12 +1,13 @@ -# Ports collection Makefile for: jags -# Date created: 21 April 2004 -# Whom: Eric van Gyzen +# vim: tabstop=8 softtabstop=0 noexpandtab +# Ports Makefile for: jags +# Date created: 21 April 2004 +# Whom: Eric van Gyzen # # $FreeBSD$ # PORTNAME= jags -PORTVERSION= 0.50 +PORTVERSION= 0.90 CATEGORIES= math MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/ DISTNAME= ${PORTNAME:U}-${PORTVERSION} @@ -15,7 +16,7 @@ DISTFILES= ${DISTNAME}${EXTRACT_SUFX} bugs-examples.tar.gz manual.pdf EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} .endif -MAINTAINER= vangyzen@stat.duke.edu +MAINTAINER= eric+fbports@vangyzen.net COMMENT= Just Another Gibbs Sampler LIB_DEPENDS= Rmath.0:${PORTSDIR}/math/libRmath @@ -28,21 +29,25 @@ LIB_DEPENDS+= lapack.3:${PORTSDIR}/math/lapack CONFIGURE_ARGS= --with-lapack=-llapack --with-blas=-lblas .endif -USE_BISON= yes - DIST_SUBDIR= ${PORTNAME} GNU_CONFIGURE= yes CONFIGURE_ENV= CPPFLAGS=-I${PREFIX}/include LDFLAGS=-L${PREFIX}/lib +.include + +.if ${OSVERSION} < 500000 +BROKEN= "Does not compile on 4.x" +.endif + post-install: .if !defined(NOPORTDOCS) - ${MKDIR} ${DOCSDIR} + ${MKDIR} -p ${DOCSDIR} ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/manual.pdf ${DOCSDIR} - ${MKDIR} ${EXAMPLESDIR} + ${MKDIR} -p ${EXAMPLESDIR} ( cd ${EXAMPLESDIR}; \ ${PAX} -rzf ${DISTDIR}/${DIST_SUBDIR}/bugs-examples.tar.gz \ -s ':^bugs-examples/*::' ) .endif -.include +.include diff --git a/math/jags/distinfo b/math/jags/distinfo index 0c0bfa5d7136..587b2d4aa666 100644 --- a/math/jags/distinfo +++ b/math/jags/distinfo @@ -1,6 +1,6 @@ -MD5 (jags/JAGS-0.50.tar.gz) = 13a068aa43b84f812e476129fbdb03db -MD5 (jags/bugs-examples.tar.gz) = c5baddf2f29bab79f8a6c7d0b3873727 -MD5 (jags/manual.pdf) = 8cc1b0371872472ea9bd496bfdbd49f4 -SIZE (jags/JAGS-0.50.tar.gz) = 481609 -SIZE (jags/bugs-examples.tar.gz) = 72373 -SIZE (jags/manual.pdf) = 130157 +MD5 (jags/JAGS-0.90.tar.gz) = 6e33e64de3073617867a2c27b7dbfb31 +MD5 (jags/bugs-examples.tar.gz) = e7abd4d3234b2aec868720f6040804f0 +MD5 (jags/manual.pdf) = cbd1068323afc07fd3d76529b4297bac +SIZE (jags/JAGS-0.90.tar.gz) = 522489 +SIZE (jags/bugs-examples.tar.gz) = 277569 +SIZE (jags/manual.pdf) = 142220 diff --git a/math/jags/files/patch-src-lib-model-Model.cc b/math/jags/files/patch-src-lib-model-Model.cc deleted file mode 100644 index 357d1ece21b3..000000000000 --- a/math/jags/files/patch-src-lib-model-Model.cc +++ /dev/null @@ -1,19 +0,0 @@ ---- src/lib/model/Model.cc.orig Tue Aug 31 13:22:19 2004 -+++ src/lib/model/Model.cc Tue Aug 31 13:22:28 2004 -@@ -12,14 +12,14 @@ - #include - #include - --#include -- - #include - #include - #include - #include - #include - #include -+ -+#include - - using std::vector; - using std::list; diff --git a/math/jags/files/patch-src-terminal-parser.yy b/math/jags/files/patch-src-terminal-parser.yy deleted file mode 100644 index f448825ef643..000000000000 --- a/math/jags/files/patch-src-terminal-parser.yy +++ /dev/null @@ -1,10 +0,0 @@ ---- src/terminal/parser.yy.orig Tue Mar 30 09:43:35 2004 -+++ src/terminal/parser.yy Thu May 27 16:59:09 2004 -@@ -3,6 +3,7 @@ - #include - #include - #include -+#include - #define MATHLIB_STANDALONE - #include - #include diff --git a/math/jags/pkg-descr b/math/jags/pkg-descr index 0bb03bb175f5..e79a9f1dbb06 100644 --- a/math/jags/pkg-descr +++ b/math/jags/pkg-descr @@ -1,5 +1,5 @@ -JAGS is Just Another Gibbs Sampler -- a program for Bayesian analysis of -graphical models via Gibbs Sampling, not wholly unlike classic BUGS. +JAGS is Just Another Gibbs Sampler -- a program for analysis of +Bayesian hierarchical models using Gibbs sampling not wholly unlike BUGS. The functionality of JAGS is based on the BUGS program created by the MRC Biostatistics Unit (http://www.mrc-bsu.cam.ac.uk/). There is a short diff --git a/math/jags/pkg-plist b/math/jags/pkg-plist index 437b72eb2965..590d9ceac3b3 100644 --- a/math/jags/pkg-plist +++ b/math/jags/pkg-plist @@ -1,63 +1,56 @@ bin/jags include/JAGS/Console.h include/JAGS/JAGSVersion.h +include/JAGS/compiler/Compiler.h +include/JAGS/compiler/ConstantFactory.h +include/JAGS/compiler/Counter.h +include/JAGS/compiler/CounterTab.h +include/JAGS/compiler/LogicalFactory.h +include/JAGS/compiler/MixtureFactory.h +include/JAGS/compiler/NodeFactory.h +include/JAGS/compiler/ParseTree.h +include/JAGS/compiler/parser.h +include/JAGS/compiler/parser_extra.h include/JAGS/distributions/DistDiscrete.h -include/JAGS/distributions/DistFinite.h include/JAGS/distributions/DistReal.h include/JAGS/distributions/DistTab.h include/JAGS/distributions/Distribution.h include/JAGS/functions/FuncTab.h include/JAGS/functions/Function.h include/JAGS/functions/InverseLinkFunc.h -include/JAGS/functions/ScalarArgScalarFunc.h include/JAGS/functions/ScalarFunc.h include/JAGS/graph/AggNode.h include/JAGS/graph/ConstantNode.h include/JAGS/graph/DeterministicNode.h +include/JAGS/graph/DevianceNode.h include/JAGS/graph/Graph.h include/JAGS/graph/GraphMarks.h include/JAGS/graph/LogicalNode.h include/JAGS/graph/MixtureNode.h include/JAGS/graph/Node.h include/JAGS/graph/NodeError.h -include/JAGS/graph/OffsetNode.h +include/JAGS/graph/NodeNameTab.h include/JAGS/graph/StochasticNode.h -include/JAGS/graph/SubSetIndex.h -include/JAGS/graph/SubSetNode.h include/JAGS/matrix/lapack.h include/JAGS/matrix/matexp.h include/JAGS/matrix/matrix.h -include/JAGS/model/Compiler.h -include/JAGS/model/Counter.h -include/JAGS/model/CounterTab.h -include/JAGS/model/LogicalFactory.h +include/JAGS/model/BUGSModel.h include/JAGS/model/Model.h include/JAGS/model/NodeArray.h -include/JAGS/model/ParseTree.h include/JAGS/model/SymTab.h include/JAGS/model/TraceMonitor.h -include/JAGS/model/parser.h -include/JAGS/model/parser_extra.h -include/JAGS/sampler/ConjugateBeta.h -include/JAGS/sampler/ConjugateDirichlet.h include/JAGS/sampler/ConjugateFactory.h -include/JAGS/sampler/ConjugateGamma.h -include/JAGS/sampler/ConjugateMNormal.h -include/JAGS/sampler/ConjugateNormal.h -include/JAGS/sampler/ConjugateSampler.h -include/JAGS/sampler/ConjugateWishart.h +include/JAGS/sampler/DSumFactory.h include/JAGS/sampler/FiniteFactory.h -include/JAGS/sampler/FiniteSampler.h include/JAGS/sampler/GibbsFactory.h include/JAGS/sampler/GibbsSampler.h include/JAGS/sampler/Sampler.h include/JAGS/sampler/SamplerFactory.h include/JAGS/sampler/SliceFactory.h -include/JAGS/sampler/SliceSampler.h +include/JAGS/sampler/Slicer.h include/JAGS/sarray/Index.h -include/JAGS/sarray/LeftRangeIterator.h include/JAGS/sarray/Range.h -include/JAGS/sarray/RightRangeIterator.h +include/JAGS/sarray/RangeIterator.h include/JAGS/sarray/SArray.h lib/libjags.a lib/libjags.la @@ -90,6 +83,7 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/dyes-init.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/dyes.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/dyes/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/.Rhistory %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/BT-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/ReadMe %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/epil/bench-test1.R @@ -111,16 +105,19 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/equivmiss-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/equiv/test2.cmd -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-data.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler-inits.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.bug +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/inhaler/inhaler.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/bench.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney-init.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/kidney.bug.new -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/kidney/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/bench-test1.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/data-transform.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-data.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-data2.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-init.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-poisson.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/leuk/leuk-s.dat @@ -144,8 +141,6 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/litters/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/ReadMe %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/bench-test1.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/bench-test2.R -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-data-transformed.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat-init.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat.bug @@ -154,7 +149,6 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/lsat2.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/notest2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/test1.cmd -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/lsat/transform-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/mice-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/mice/mice-init.R @@ -190,11 +184,13 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/salm.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/salm/test2.cmd -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test2.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test3.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test4.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/bench-test5.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/jags2.ind +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/jags2.out +%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds-init.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seeds.bug @@ -202,7 +198,6 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedssig.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedsuni.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/seedszro.bug -%%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test3.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol1/seeds/test4.cmd @@ -212,15 +207,20 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/air.bug -%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/bench.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/air/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/alli.bug +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/alli/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia2-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/asia2.bug +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/bench-test2.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/asia/test2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-cloglog.bug @@ -228,14 +228,23 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-logit.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/beetles-probit.bug +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test2.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/bench-test3.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/beetles/test3.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/biops.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/biops/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bar.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test2.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test3.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/bench-test4.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/birats1.bug @@ -247,15 +256,19 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/test3.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/birats/test4.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/bar +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/baz %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/cervix.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/cervix/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/dugongs.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/dugongs/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/bench-test2.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes.bug @@ -263,17 +276,23 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/eyes2.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/eyes/test2.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/hearts.dat %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/hearts/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/bench.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ice-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/ice-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/icear.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/ice/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test2.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/bench-test3.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-constant.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/jaw-inits.R @@ -283,19 +302,23 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/test2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/jaw/test3.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/bench-test1.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/bench.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/mvotree.bug +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/orange-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.dat %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/otree.in -%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/orange/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/pigs.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/pigs/test1.cmd +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/bench-test1.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-data.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools-inits.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/schools.bug @@ -303,6 +326,8 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/schools/test1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/ReadMe +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test3.R +%%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/bench-test4.R %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest1.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/notest2.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant-data.R @@ -314,15 +339,6 @@ lib/libjags.la %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/stagnant2.bug %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test3.cmd %%PORTDOCS%%%%EXAMPLESDIR%%/vol2/stagnant/test4.cmd -@dirrm include/JAGS/sarray -@dirrm include/JAGS/sampler -@dirrm include/JAGS/model -@dirrm include/JAGS/matrix -@dirrm include/JAGS/graph -@dirrm include/JAGS/functions -@dirrm include/JAGS/distributions -@dirrm include/JAGS -%%PORTDOCS%%@dirrm %%DOCSDIR%% %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/stagnant %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/schools %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol2/pigs @@ -352,6 +368,7 @@ lib/libjags.la %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/line %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/leuk %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/kidney +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/inhaler %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/equiv %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/epil %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1/dyes @@ -360,3 +377,13 @@ lib/libjags.la %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/vol1 %%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/R %%PORTDOCS%%@dirrm %%EXAMPLESDIR%% +%%PORTDOCS%%@dirrm %%DOCSDIR%% +@dirrm include/JAGS/sarray +@dirrm include/JAGS/sampler +@dirrm include/JAGS/model +@dirrm include/JAGS/matrix +@dirrm include/JAGS/graph +@dirrm include/JAGS/functions +@dirrm include/JAGS/distributions +@dirrm include/JAGS/compiler +@dirrm include/JAGS -- cgit v1.2.3