bin/ErrorCount.sh bin/RefMapOpt.sh bin/ReferenceOpt.sh bin/Rename_SequenceFiles.sh bin/Rename_for_dDocent.sh bin/Rename_for_dDocent_with-INDEX.sh bin/dDocent bin/dDocent_filters bin/dDocent_ngs.sh bin/ddocent-assembly-test bin/ddocent-assembly-test-cleanup bin/filter_hwe_by_pop.pl bin/filter_missing_ind.sh bin/pop_missing_filter.sh bin/remake_reference.sh bin/remove.bad.hap.loci.sh