--- Makefile.orig	Mon May  7 11:36:23 2001
+++ Makefile	Mon May  7 11:40:36 2001
@@ -12,13 +12,13 @@
 
 # use -DBIG_LIB64 to generate 64-bit offsets in map_db .xin files
 
-CC= cc -O -std1
+#CC= cc -O -std1
 #CC= insure -g -DDEBUG
 #CC= cc -g -DDEBUG -std1
 #CC= gcc -g -Wall
 #
 # standard line for normal searching
-CFLAGS= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP
+CFLAGS+= -DM10_CONS -DUNIX -DTIMES -DHZ=60 -DBIGMEM -DMAX_WORKERS=4 -DTHR_EXIT=pthread_exit -DPROGRESS -DFASTA_HOST='"fasta.bioch.virginia.edu/fasta/cgi"' -DIS_LITTLE_ENDIAN -DUSE_MMAP
 # -I/usr/local/include/mysql -DMYSQL_DB 
 #(for mySQL databases)  (also requires change to Makefile33.common)
 
@@ -32,11 +32,15 @@
 HFLAGS= -o
 NFLAGS= -o
 
-#for DEC Unix V4.0 
 THR_SUBS = pthr_subs
-THR_LIBS = -threads
+THR_LIBS = -pthread
 THR_CC =
 
+#for DEC Unix V4.0 
+#THR_SUBS = pthr_subs
+#THR_LIBS = -threads
+#THR_CC =
+#
 #for Sun
 #THR_SUBS = uthr_subs
 #THR_LIBS = -lthread
@@ -53,9 +57,9 @@
 #THR_LIBS = -lpthreads
 #THR_CC =
 
-XDIR = /seqprg/slib/bin
+XDIR = ${PREFIX}/bin
 
 # renamed (fasta33)  programs
-include Makefile33.common
+#include Makefile33.common
 # conventional (fasta3) names
-#include Makefile.common
+include Makefile.common