bin/atoiindex
bin/cmetindex
bin/dbsnp_iit
bin/ensembl_genes
bin/fa_coords
bin/get-genome
bin/gff3_genes
bin/gff3_introns
bin/gff3_splicesites
bin/gmap
bin/gmap_build
bin/gmap_compress
bin/gmap_process
bin/gmap_reassemble
bin/gmap_uncompress
bin/gmapindex
bin/gmapl
bin/gsnap
bin/gsnapl
bin/gtf_genes
bin/gtf_introns
bin/gtf_splicesites
bin/gvf_iit
bin/iit_dump
bin/iit_get
bin/iit_store
bin/md_coords
bin/psl_genes
bin/psl_introns
bin/psl_splicesites
bin/sam_sort
bin/snpindex
bin/uniqscan
bin/uniqscanl
bin/vcf_iit