bin/annotate bin/combineMUMs bin/delta-filter bin/dnadiff bin/exact-tandems bin/mummer bin/mummerplot bin/nucmer bin/promer bin/repeat-match bin/show-aligns bin/show-coords bin/show-diff bin/show-snps bin/show-tiling include/mummer-4.0.0beta2/include/compactsufsort/compactsufsort.hpp include/mummer-4.0.0beta2/include/compactsufsort/compactsufsort_imp.hpp include/mummer-4.0.0beta2/include/compactsufsort/const_iterator_traits.hpp include/mummer-4.0.0beta2/include/compactsufsort/divsufsort_private.h include/mummer-4.0.0beta2/include/compactsufsort/said_traits.hpp include/mummer-4.0.0beta2/include/compactsufsort/sssort_imp.hpp include/mummer-4.0.0beta2/include/compactsufsort/trsort_imp.hpp include/mummer-4.0.0beta2/include/jellyfish/circular_buffer.hpp include/mummer-4.0.0beta2/include/jellyfish/cooperative_pool2.hpp include/mummer-4.0.0beta2/include/jellyfish/cpp_array.hpp include/mummer-4.0.0beta2/include/jellyfish/divisor.hpp include/mummer-4.0.0beta2/include/jellyfish/stream_manager.hpp include/mummer-4.0.0beta2/include/jellyfish/whole_sequence_parser.hpp include/mummer-4.0.0beta2/include/mt_skip_list/common.hpp include/mummer-4.0.0beta2/include/mt_skip_list/set.hpp include/mummer-4.0.0beta2/include/mummer/48bit_index.hpp include/mummer-4.0.0beta2/include/mummer/48bit_iterator.hpp include/mummer-4.0.0beta2/include/mummer/const_iterator_traits.hpp include/mummer-4.0.0beta2/include/mummer/delta.hh include/mummer-4.0.0beta2/include/mummer/dset.hpp include/mummer-4.0.0beta2/include/mummer/fasta.hpp include/mummer-4.0.0beta2/include/mummer/mgaps.hh include/mummer-4.0.0beta2/include/mummer/nucmer.hpp include/mummer-4.0.0beta2/include/mummer/openmp_qsort.hpp include/mummer-4.0.0beta2/include/mummer/postnuc.hh include/mummer-4.0.0beta2/include/mummer/redirect_to_pager.hpp include/mummer-4.0.0beta2/include/mummer/sparseSA.hpp include/mummer-4.0.0beta2/include/mummer/sparseSA_imp.hpp include/mummer-4.0.0beta2/include/mummer/sw_align.hh include/mummer-4.0.0beta2/include/mummer/sw_alignscore.hh include/mummer-4.0.0beta2/include/mummer/tigrinc.hh include/mummer-4.0.0beta2/include/mummer/timer.hpp include/mummer-4.0.0beta2/include/mummer/translate.hh include/mummer-4.0.0beta2/include/thread_pipe.hpp include/mummer-4.0.0beta2/include/thread_pipe/circular_buffer.hpp include/mummer-4.0.0beta2/include/thread_pipe/cooperative_pool2.hpp include/mummer-4.0.0beta2/include/thread_pipe/divisor.hpp include/mummer-4.0.0beta2/include/thread_pipe/traits.hpp lib/libumdmummer.so lib/libumdmummer.so.0 lib/libumdmummer.so.0.0.0 lib/mummer/Foundation.pm lib/mummer/tandem-repeat.awk libdata/pkgconfig/mummer.pc libexec/mummer/mgaps libexec/mummer/postnuc libexec/mummer/postpro libexec/mummer/prepro