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bin/bp_filter_search.pl
bin/bp_genbank2gff.pl
bin/bp_bulk_load_gff.pl
bin/bp_nrdb.pl
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share/examples/bioperl/sirna/TAG
share/examples/bioperl/sirna/rnai_finder.cgi
share/examples/bioperl/searchio/waba2gff.pl
share/examples/bioperl/searchio/custom_writer.pl
share/examples/bioperl/searchio/hitwriter.pl
share/examples/bioperl/searchio/hspwriter.pl
share/examples/bioperl/searchio/htmlwriter.pl
share/examples/bioperl/searchio/psiblast_features.pl
share/examples/bioperl/searchio/psiblast_iterations.pl
share/examples/bioperl/searchio/rawwriter.pl
share/examples/bioperl/searchio/resultwriter.pl
share/examples/bioperl/searchio/blast_example.pl
share/examples/bioperl/root/lib/Bio/PrimarySeq.pm
share/examples/bioperl/root/lib/Bio/PrimarySeqI.pm
share/examples/bioperl/root/lib/Bio/Seq.pm
share/examples/bioperl/root/lib/Bio/SeqI.pm
share/examples/bioperl/root/lib/Error.pm
share/examples/bioperl/root/lib/TestInterface.pm
share/examples/bioperl/root/lib/TestObject.pm
share/examples/bioperl/root/README
share/examples/bioperl/root/exceptions1.pl
share/examples/bioperl/root/exceptions2.pl
share/examples/bioperl/root/exceptions3.pl
share/examples/bioperl/root/exceptions4.pl
share/examples/bioperl/db/gb2features.pl
share/examples/bioperl/db/dbfetch
share/examples/bioperl/db/est_tissue_query.pl
share/examples/bioperl/db/get_seqs.pl
share/examples/bioperl/db/getGenBank.pl
share/examples/bioperl/db/rfetch.pl
share/examples/bioperl/db/use_registry.pl
share/examples/bioperl/biblio/biblio_examples.pl
share/examples/bioperl/biblio/biblio_soap.pl
share/examples/bioperl/popgen/parse_calc_stats.pl
share/examples/bioperl/biographics/all_glyphs.pl
share/examples/bioperl/biographics/dynamic_glyphs.pl
share/examples/bioperl/biographics/feature_data.gff
share/examples/bioperl/biographics/feature_data.txt
share/examples/bioperl/biographics/lots_of_glyphs.pl
share/examples/bioperl/biographics/render_sequence.pl
share/examples/bioperl/cluster/dbsnp.pl
share/examples/bioperl/contributed/nmrpdb_parse.pl
share/examples/bioperl/contributed/prosite2perl.pl
share/examples/bioperl/contributed/rebase2list.pl
share/examples/bioperl/liveseq/change_gene.pl
share/examples/bioperl/Bio-DB-GFF/load_ucsc.pl
share/examples/bioperl/subsequence.cgi
share/examples/bioperl/longorf.pl
share/examples/bioperl/make_mrna_protein.pl
share/examples/bioperl/bioperl.pl
share/examples/bioperl/make_primers.pl
share/examples/bioperl/rev_and_trans.pl
share/examples/bioperl/revcom_dir.pl
share/examples/bioperl/generate_random_seq.pl
share/bioperl/scripts/index/TAG
share/bioperl/scripts/index/bp_fetch.PLS
share/bioperl/scripts/index/bp_index.PLS
share/bioperl/scripts/utilities/seq_length.PLS
share/bioperl/scripts/utilities/README
share/bioperl/scripts/utilities/TAG
share/bioperl/scripts/utilities/bp_mrtrans.PLS
share/bioperl/scripts/utilities/bp_sreformat.PLS
share/bioperl/scripts/utilities/dbsplit.PLS
share/bioperl/scripts/utilities/mask_by_search.PLS
share/bioperl/scripts/utilities/mutate.PLS
share/bioperl/scripts/utilities/pairwise_kaks.PLS
share/bioperl/scripts/utilities/remote_blast.PLS
share/bioperl/scripts/utilities/search2BSML.PLS
share/bioperl/scripts/utilities/search2alnblocks.PLS
share/bioperl/scripts/utilities/search2gff.PLS
share/bioperl/scripts/utilities/search2tribe.PLS
share/bioperl/scripts/utilities/bp_nrdb.PLS
share/bioperl/scripts/DB/TAG
share/bioperl/scripts/DB/biofetch_genbank_proxy.PLS
share/bioperl/scripts/DB/bioflat_index.PLS
share/bioperl/scripts/DB/biogetseq.PLS
share/bioperl/scripts/DB/flanks.PLS
share/bioperl/scripts/biblio/TAG
share/bioperl/scripts/biblio/biblio.PLS
share/bioperl/scripts/das/README
share/bioperl/scripts/das/TAG
share/bioperl/scripts/graphics/frend.PLS
share/bioperl/scripts/graphics/README
share/bioperl/scripts/graphics/TAG
share/bioperl/scripts/graphics/feature_draw.PLS
share/bioperl/scripts/graphics/search_overview.PLS
share/bioperl/scripts/tree/TAG
share/bioperl/scripts/tree/blast2tree.PLS
share/bioperl/scripts/Bio-DB-GFF/process_wormbase.PLS
share/bioperl/scripts/Bio-DB-GFF/README
share/bioperl/scripts/Bio-DB-GFF/TAG
share/bioperl/scripts/Bio-DB-GFF/bp_genbank2gff.PLS
share/bioperl/scripts/Bio-DB-GFF/bulk_load_gff.PLS
share/bioperl/scripts/Bio-DB-GFF/fast_load_gff.PLS
share/bioperl/scripts/Bio-DB-GFF/generate_histogram.PLS
share/bioperl/scripts/Bio-DB-GFF/load_ucsc.pl
share/bioperl/scripts/Bio-DB-GFF/pg_bulk_load_gff.PLS
share/bioperl/scripts/Bio-DB-GFF/process_gadfly.PLS
share/bioperl/scripts/Bio-DB-GFF/process_ncbi_human.PLS
share/bioperl/scripts/Bio-DB-GFF/process_sgd.PLS
share/bioperl/scripts/Bio-DB-GFF/load_gff.PLS
share/bioperl/scripts/searchio/filter_search.PLS
share/bioperl/scripts/seq/TAG
share/bioperl/scripts/seq/extract_feature_seq.PLS
share/bioperl/scripts/seq/seqconvert.PLS
share/bioperl/scripts/seq/split_seq.PLS
share/bioperl/scripts/seq/translate_seq.PLS
share/bioperl/scripts/seqstats/TAG
share/bioperl/scripts/seqstats/aacomp.PLS
share/bioperl/scripts/seqstats/chaos_plot.PLS
share/bioperl/scripts/seqstats/gccalc.PLS
share/bioperl/scripts/seqstats/oligo_count.PLS
share/bioperl/scripts/taxa/TAG
share/bioperl/scripts/taxa/local_taxonomydb_query.PLS
share/bioperl/scripts/taxa/taxid4species.PLS
share/bioperl/scripts/popgen/composite_LD.PLS
share/bioperl/scripts/popgen/heterogeneity_test.PLS
share/bioperl/scripts/install_bioperl_scripts.pl
share/bioperl/models/population_proposal.txt
share/bioperl/models/README
share/bioperl/models/bio_liveseq_variation.dia
share/bioperl/models/bio_map.dia
share/bioperl/models/bio_restriction.dia
share/bioperl/models/bioperl.dia
share/bioperl/models/coordinatemapper.dia
share/bioperl/models/map_proposal.txt
share/bioperl/models/maps_and_markers.dia
share/bioperl/models/popgen.dia
share/bioperl/models/biblio.dia
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio
@dirrm %%SITE_PERL%%/Bio/Das
@dirrm %%SITE_PERL%%/Bio/MapIO
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@dirrm %%SITE_PERL%%/Bio/Expression
@dirrm %%SITE_PERL%%/Bio/Align
@dirrm %%SITE_PERL%%/Bio/TreeIO
@dirrm %%SITE_PERL%%/Bio/AlignIO
@dirrm %%SITE_PERL%%/Bio/Index
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@dirrm %%SITE_PERL%%/Bio/Ontology
@dirrm %%SITE_PERL%%/Bio/Phenotype/OMIM
@dirrm %%SITE_PERL%%/Bio/Phenotype/MeSH
@dirrm %%SITE_PERL%%/Bio/Phenotype
@dirrm %%SITE_PERL%%/Bio/ClusterIO
@dirrm %%SITE_PERL%%/Bio/PopGen/Simulation
@dirrm %%SITE_PERL%%/Bio/PopGen/IO
@dirrm %%SITE_PERL%%/Bio/PopGen
@dirrm %%SITE_PERL%%/Bio/SeqFeature/SiRNA
@dirrm %%SITE_PERL%%/Bio/SeqFeature/Gene
@dirrm %%SITE_PERL%%/Bio/SeqFeature/Tools
@dirrm %%SITE_PERL%%/Bio/SeqFeature
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@dirrm %%SITE_PERL%%/Bio/Seq/Meta
@dirrm %%SITE_PERL%%/Bio/Seq
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@dirrm %%SITE_PERL%%/Bio/Annotation
@dirrm %%SITE_PERL%%/Bio/Coordinate/Result
@dirrm %%SITE_PERL%%/Bio/Coordinate
@dirrm %%SITE_PERL%%/Bio/Matrix/IO
@dirrm %%SITE_PERL%%/Bio/Matrix/PSM/IO
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@dirrm %%SITE_PERL%%/Bio/Matrix
@dirrm %%SITE_PERL%%/Bio/Tree
@dirrm %%SITE_PERL%%/Bio/Structure/IO
@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/DSSP
@dirrm %%SITE_PERL%%/Bio/Structure/SecStr/STRIDE
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@dirrm %%SITE_PERL%%/Bio/Structure
@dirrm %%SITE_PERL%%/Bio/Assembly/IO
@dirrm %%SITE_PERL%%/Bio/Assembly
@dirrm %%SITE_PERL%%/Bio/Map
@dirrm %%SITE_PERL%%/Bio/Restriction/Enzyme
@dirrm %%SITE_PERL%%/Bio/Restriction/IO
@dirrm %%SITE_PERL%%/Bio/Restriction
@dirrm %%SITE_PERL%%/Bio/LiveSeq/IO
@dirrm %%SITE_PERL%%/Bio/LiveSeq
@dirrm %%SITE_PERL%%/Bio/Root
@dirrm %%SITE_PERL%%/Bio/Search/Result
@dirrm %%SITE_PERL%%/Bio/Search/Iteration
@dirrm %%SITE_PERL%%/Bio/Search/HSP
@dirrm %%SITE_PERL%%/Bio/Search/Hit
@dirrm %%SITE_PERL%%/Bio/Search
@dirrm %%SITE_PERL%%/Bio/Event
@dirrm %%SITE_PERL%%/Bio/SearchIO/Writer
@dirrm %%SITE_PERL%%/Bio/SearchIO
@dirrm %%SITE_PERL%%/Bio/Factory
@dirrm %%SITE_PERL%%/Bio/Variation/IO
@dirrm %%SITE_PERL%%/Bio/Variation
@dirrm %%SITE_PERL%%/Bio/Tools/Run
@dirrm %%SITE_PERL%%/Bio/Tools/EMBOSS
@dirrm %%SITE_PERL%%/Bio/Tools/Primer/Assessor
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@dirrm %%SITE_PERL%%/Bio/Tools/Alignment
@dirrm %%SITE_PERL%%/Bio/Tools/Blast
@dirrm %%SITE_PERL%%/Bio/Tools/Prediction
@dirrm %%SITE_PERL%%/Bio/Tools/Sim4
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Phylip
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/Molphy
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo/PAML
@dirrm %%SITE_PERL%%/Bio/Tools/Phylo
@dirrm %%SITE_PERL%%/Bio/Tools/BPlite
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/DNA
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis/Protein
@dirrm %%SITE_PERL%%/Bio/Tools/Analysis
@dirrm %%SITE_PERL%%/Bio/Tools/HMMER
@dirrm %%SITE_PERL%%/Bio/Tools
@dirrm %%SITE_PERL%%/Bio/Graphics/FeatureFile
@dirrm %%SITE_PERL%%/Bio/Graphics/Glyph
@dirrm %%SITE_PERL%%/Bio/Graphics
@dirrm %%SITE_PERL%%/Bio/Taxonomy
@dirrm %%SITE_PERL%%/Bio/DB/Biblio
@dirrm %%SITE_PERL%%/Bio/DB/Query
@dirrm %%SITE_PERL%%/Bio/DB/Taxonomy
@dirrm %%SITE_PERL%%/Bio/DB/Flat/BDB
@dirrm %%SITE_PERL%%/Bio/DB/Flat
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Util
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor/dbi
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Adaptor
@dirrm %%SITE_PERL%%/Bio/DB/GFF/Aggregator
@dirrm %%SITE_PERL%%/Bio/DB/GFF
@dirrm %%SITE_PERL%%/Bio/DB
@dirrm %%SITE_PERL%%/Bio/Biblio/IO
@dirrm %%SITE_PERL%%/Bio/Biblio
@dirrm %%SITE_PERL%%/Bio/OntologyIO/Handlers
@dirrm %%SITE_PERL%%/Bio/OntologyIO
@dirrm %%SITE_PERL%%/Bio/Location
@dirrm %%SITE_PERL%%/Bio/SeqIO/game
@dirrm %%SITE_PERL%%/Bio/SeqIO
@dirrm %%SITE_PERL%%/Bio
@dirrm share/doc/bioperl/doc/faq
@dirrm share/doc/bioperl/doc/howto/examples/graphics
@dirrm share/doc/bioperl/doc/howto/examples
@dirrm share/doc/bioperl/doc/howto/figs/graphics
@dirrm share/doc/bioperl/doc/howto/figs
@dirrm share/doc/bioperl/doc/howto/html/images
@dirrm share/doc/bioperl/doc/howto/html
@dirrm share/doc/bioperl/doc/howto/pdf
@dirrm share/doc/bioperl/doc/howto/sgml
@dirrm share/doc/bioperl/doc/howto/txt
@dirrm share/doc/bioperl/doc/howto
@dirrm share/doc/bioperl/doc
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@dirrm share/examples/bioperl/align
@dirrm share/examples/bioperl/tools
@dirrm share/examples/bioperl/tk
@dirrm share/examples/bioperl/tree
@dirrm share/examples/bioperl/sirna
@dirrm share/examples/bioperl/searchio
@dirrm share/examples/bioperl/root/lib/Bio
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@dirrm share/examples/bioperl/root
@dirrm share/examples/bioperl/db
@dirrm share/examples/bioperl/biblio
@dirrm share/examples/bioperl/popgen
@dirrm share/examples/bioperl/biographics
@dirrm share/examples/bioperl/cluster
@dirrm share/examples/bioperl/contributed
@dirrm share/examples/bioperl/liveseq
@dirrm share/examples/bioperl/Bio-DB-GFF
@dirrm share/examples/bioperl
@dirrm share/bioperl/scripts/index
@dirrm share/bioperl/scripts/utilities
@dirrm share/bioperl/scripts/DB
@dirrm share/bioperl/scripts/biblio
@dirrm share/bioperl/scripts/das
@dirrm share/bioperl/scripts/graphics
@dirrm share/bioperl/scripts/tree
@dirrm share/bioperl/scripts/Bio-DB-GFF
@dirrm share/bioperl/scripts/searchio
@dirrm share/bioperl/scripts/seq
@dirrm share/bioperl/scripts/seqstats
@dirrm share/bioperl/scripts/taxa
@dirrm share/bioperl/scripts/popgen
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@dirrm share/bioperl/models
@dirrm share/bioperl