%%PYTHON_SITELIBDIR%%/cogent/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/align/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/_compare.so
%%PYTHON_SITELIBDIR%%/cogent/align/_pairwise_pogs.so
%%PYTHON_SITELIBDIR%%/cogent/align/_pairwise_seqs.so
%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.py
%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/algorithm.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/align.py
%%PYTHON_SITELIBDIR%%/cogent/align/align.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/align.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.py
%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/dp_calculation.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.py
%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/indel_model.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/indel_positions.py
%%PYTHON_SITELIBDIR%%/cogent/align/indel_positions.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/indel_positions.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/pairwise.py
%%PYTHON_SITELIBDIR%%/cogent/align/pairwise.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/pairwise.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/progressive.py
%%PYTHON_SITELIBDIR%%/cogent/align/progressive.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/progressive.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/pycompare.py
%%PYTHON_SITELIBDIR%%/cogent/align/pycompare.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/pycompare.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/traceback.py
%%PYTHON_SITELIBDIR%%/cogent/align/traceback.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/traceback.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/weights/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/align/weights/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/weights/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/weights/methods.py
%%PYTHON_SITELIBDIR%%/cogent/align/weights/methods.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/weights/methods.pyo
%%PYTHON_SITELIBDIR%%/cogent/align/weights/util.py
%%PYTHON_SITELIBDIR%%/cogent/align/weights/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/align/weights/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/app/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/blast.py
%%PYTHON_SITELIBDIR%%/cogent/app/blast.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/blast.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/blat.py
%%PYTHON_SITELIBDIR%%/cogent/app/blat.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/blat.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/bwa.py
%%PYTHON_SITELIBDIR%%/cogent/app/bwa.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/bwa.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/carnac.py
%%PYTHON_SITELIBDIR%%/cogent/app/carnac.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/carnac.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/cd_hit.py
%%PYTHON_SITELIBDIR%%/cogent/app/cd_hit.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/cd_hit.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/clearcut.py
%%PYTHON_SITELIBDIR%%/cogent/app/clearcut.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/clearcut.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/clustalw.py
%%PYTHON_SITELIBDIR%%/cogent/app/clustalw.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/clustalw.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/cmfinder.py
%%PYTHON_SITELIBDIR%%/cogent/app/cmfinder.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/cmfinder.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/comrna.py
%%PYTHON_SITELIBDIR%%/cogent/app/comrna.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/comrna.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/consan.py
%%PYTHON_SITELIBDIR%%/cogent/app/consan.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/consan.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.py
%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/contrafold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/cove.py
%%PYTHON_SITELIBDIR%%/cogent/app/cove.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/cove.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/dialign.py
%%PYTHON_SITELIBDIR%%/cogent/app/dialign.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/dialign.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/dotur.py
%%PYTHON_SITELIBDIR%%/cogent/app/dotur.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/dotur.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/dynalign.py
%%PYTHON_SITELIBDIR%%/cogent/app/dynalign.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/dynalign.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree.py
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree_v1.py
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree_v1.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/fasttree_v1.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/foldalign.py
%%PYTHON_SITELIBDIR%%/cogent/app/foldalign.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/foldalign.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/formatdb.py
%%PYTHON_SITELIBDIR%%/cogent/app/formatdb.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/formatdb.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/gctmpca.py
%%PYTHON_SITELIBDIR%%/cogent/app/gctmpca.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/gctmpca.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/guppy.py
%%PYTHON_SITELIBDIR%%/cogent/app/guppy.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/guppy.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/ilm.py
%%PYTHON_SITELIBDIR%%/cogent/app/ilm.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/ilm.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/infernal.py
%%PYTHON_SITELIBDIR%%/cogent/app/infernal.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/infernal.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/knetfold.py
%%PYTHON_SITELIBDIR%%/cogent/app/knetfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/knetfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/mafft.py
%%PYTHON_SITELIBDIR%%/cogent/app/mafft.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/mafft.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/mfold.py
%%PYTHON_SITELIBDIR%%/cogent/app/mfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/mfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/mothur.py
%%PYTHON_SITELIBDIR%%/cogent/app/mothur.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/mothur.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/msms.py
%%PYTHON_SITELIBDIR%%/cogent/app/msms.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/msms.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/muscle.py
%%PYTHON_SITELIBDIR%%/cogent/app/muscle.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/muscle.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/muscle_v38.py
%%PYTHON_SITELIBDIR%%/cogent/app/muscle_v38.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/muscle_v38.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/nupack.py
%%PYTHON_SITELIBDIR%%/cogent/app/nupack.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/nupack.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/parameters.py
%%PYTHON_SITELIBDIR%%/cogent/app/parameters.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/parameters.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/parsinsert.py
%%PYTHON_SITELIBDIR%%/cogent/app/parsinsert.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/parsinsert.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/pfold.py
%%PYTHON_SITELIBDIR%%/cogent/app/pfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/pfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/pknotsrg.py
%%PYTHON_SITELIBDIR%%/cogent/app/pknotsrg.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/pknotsrg.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/pplacer.py
%%PYTHON_SITELIBDIR%%/cogent/app/pplacer.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/pplacer.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/raxml.py
%%PYTHON_SITELIBDIR%%/cogent/app/raxml.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/raxml.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/raxml_v730.py
%%PYTHON_SITELIBDIR%%/cogent/app/raxml_v730.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/raxml_v730.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier.py
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier20.py
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier20.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rdp_classifier20.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rnaalifold.py
%%PYTHON_SITELIBDIR%%/cogent/app/rnaalifold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rnaalifold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rnaforester.py
%%PYTHON_SITELIBDIR%%/cogent/app/rnaforester.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rnaforester.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rnashapes.py
%%PYTHON_SITELIBDIR%%/cogent/app/rnashapes.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rnashapes.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rnaview.py
%%PYTHON_SITELIBDIR%%/cogent/app/rnaview.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rnaview.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/rtax.py
%%PYTHON_SITELIBDIR%%/cogent/app/rtax.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/rtax.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/sfffile.py
%%PYTHON_SITELIBDIR%%/cogent/app/sfffile.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/sfffile.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/sffinfo.py
%%PYTHON_SITELIBDIR%%/cogent/app/sffinfo.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/sffinfo.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/sfold.py
%%PYTHON_SITELIBDIR%%/cogent/app/sfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/sfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/stride.py
%%PYTHON_SITELIBDIR%%/cogent/app/stride.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/stride.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/uclust.py
%%PYTHON_SITELIBDIR%%/cogent/app/uclust.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/uclust.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/unafold.py
%%PYTHON_SITELIBDIR%%/cogent/app/unafold.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/unafold.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/usearch.py
%%PYTHON_SITELIBDIR%%/cogent/app/usearch.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/usearch.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/util.py
%%PYTHON_SITELIBDIR%%/cogent/app/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/app/vienna_package.py
%%PYTHON_SITELIBDIR%%/cogent/app/vienna_package.pyc
%%PYTHON_SITELIBDIR%%/cogent/app/vienna_package.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/UPGMA.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/UPGMA.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/UPGMA.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/approximate_mds.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/goodness_of_fit.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/metric_scaling.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/metric_scaling.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/metric_scaling.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/nmds.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/nmds.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/nmds.pyo
%%PYTHON_SITELIBDIR%%/cogent/cluster/procrustes.py
%%PYTHON_SITELIBDIR%%/cogent/cluster/procrustes.pyc
%%PYTHON_SITELIBDIR%%/cogent/cluster/procrustes.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/core/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/alignment.py
%%PYTHON_SITELIBDIR%%/cogent/core/alignment.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/alignment.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/alphabet.py
%%PYTHON_SITELIBDIR%%/cogent/core/alphabet.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/alphabet.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/annotation.py
%%PYTHON_SITELIBDIR%%/cogent/core/annotation.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/annotation.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/bitvector.py
%%PYTHON_SITELIBDIR%%/cogent/core/bitvector.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/bitvector.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/entity.py
%%PYTHON_SITELIBDIR%%/cogent/core/entity.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/entity.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/genetic_code.py
%%PYTHON_SITELIBDIR%%/cogent/core/genetic_code.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/genetic_code.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/info.py
%%PYTHON_SITELIBDIR%%/cogent/core/info.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/info.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/location.py
%%PYTHON_SITELIBDIR%%/cogent/core/location.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/location.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/moltype.py
%%PYTHON_SITELIBDIR%%/cogent/core/moltype.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/moltype.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/profile.py
%%PYTHON_SITELIBDIR%%/cogent/core/profile.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/profile.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/sequence.py
%%PYTHON_SITELIBDIR%%/cogent/core/sequence.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/sequence.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/tree.py
%%PYTHON_SITELIBDIR%%/cogent/core/tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/core/usage.py
%%PYTHON_SITELIBDIR%%/cogent/core/usage.pyc
%%PYTHON_SITELIBDIR%%/cogent/core/usage.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/data/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/energy_params.py
%%PYTHON_SITELIBDIR%%/cogent/data/energy_params.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/energy_params.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/ligand_properties.py
%%PYTHON_SITELIBDIR%%/cogent/data/ligand_properties.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/ligand_properties.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/molecular_weight.py
%%PYTHON_SITELIBDIR%%/cogent/data/molecular_weight.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/molecular_weight.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/nucleic_properties.py
%%PYTHON_SITELIBDIR%%/cogent/data/nucleic_properties.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/nucleic_properties.pyo
%%PYTHON_SITELIBDIR%%/cogent/data/protein_properties.py
%%PYTHON_SITELIBDIR%%/cogent/data/protein_properties.pyc
%%PYTHON_SITELIBDIR%%/cogent/data/protein_properties.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/db/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/assembly.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/assembly.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/assembly.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/compara.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/compara.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/compara.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/database.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/database.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/database.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/feature_level.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/feature_level.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/feature_level.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/genome.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/genome.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/genome.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/host.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/host.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/host.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/name.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/name.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/name.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/region.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/region.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/region.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/related_region.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/related_region.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/related_region.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/sequence.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/sequence.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/sequence.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/species.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/species.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/species.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/util.py
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ensembl/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/ncbi.py
%%PYTHON_SITELIBDIR%%/cogent/db/ncbi.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/ncbi.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/pdb.py
%%PYTHON_SITELIBDIR%%/cogent/db/pdb.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/pdb.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/rfam.py
%%PYTHON_SITELIBDIR%%/cogent/db/rfam.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/rfam.pyo
%%PYTHON_SITELIBDIR%%/cogent/db/util.py
%%PYTHON_SITELIBDIR%%/cogent/db/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/db/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/draw/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/arrow_rates.py
%%PYTHON_SITELIBDIR%%/cogent/draw/arrow_rates.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/arrow_rates.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/codon_usage.py
%%PYTHON_SITELIBDIR%%/cogent/draw/codon_usage.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/codon_usage.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/compatibility.py
%%PYTHON_SITELIBDIR%%/cogent/draw/compatibility.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/compatibility.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/dendrogram.py
%%PYTHON_SITELIBDIR%%/cogent/draw/dendrogram.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/dendrogram.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/dinuc.py
%%PYTHON_SITELIBDIR%%/cogent/draw/dinuc.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/dinuc.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/distribution_plots.py
%%PYTHON_SITELIBDIR%%/cogent/draw/distribution_plots.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/distribution_plots.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/dotplot.py
%%PYTHON_SITELIBDIR%%/cogent/draw/dotplot.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/dotplot.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/fancy_arrow.py
%%PYTHON_SITELIBDIR%%/cogent/draw/fancy_arrow.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/fancy_arrow.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/legend.py
%%PYTHON_SITELIBDIR%%/cogent/draw/legend.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/legend.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/linear.py
%%PYTHON_SITELIBDIR%%/cogent/draw/linear.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/linear.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/multivariate_plot.py
%%PYTHON_SITELIBDIR%%/cogent/draw/multivariate_plot.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/multivariate_plot.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/rlg2mpl.py
%%PYTHON_SITELIBDIR%%/cogent/draw/rlg2mpl.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/rlg2mpl.pyo
%%PYTHON_SITELIBDIR%%/cogent/draw/util.py
%%PYTHON_SITELIBDIR%%/cogent/draw/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/draw/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/_likelihood_tree.so
%%PYTHON_SITELIBDIR%%/cogent/evolve/_pairwise_distance.so
%%PYTHON_SITELIBDIR%%/cogent/evolve/_solved_models.so
%%PYTHON_SITELIBDIR%%/cogent/evolve/best_likelihood.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/best_likelihood.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/best_likelihood.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/bootstrap.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/bootstrap.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/bootstrap.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/coevolution.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/coevolution.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/coevolution.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/discrete_markov.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/discrete_markov.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/discrete_markov.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_calculation.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_calculation.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_calculation.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_function.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_function.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_function.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_tree.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/likelihood_tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/models.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/models.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/models.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/motif_prob_model.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/motif_prob_model.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/motif_prob_model.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/pairwise_distance.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/pairwise_distance.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/pairwise_distance.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/parameter_controller.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/parameter_controller.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/parameter_controller.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/predicate.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/predicate.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/predicate.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/solved_models.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/solved_models.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/solved_models.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/simulate.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/simulate.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/simulate.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_calculation.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_calculation.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_calculation.pyo
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_model.py
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_model.pyc
%%PYTHON_SITELIBDIR%%/cogent/evolve/substitution_model.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/format/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/alignment.py
%%PYTHON_SITELIBDIR%%/cogent/format/alignment.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/alignment.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/bedgraph.py
%%PYTHON_SITELIBDIR%%/cogent/format/bedgraph.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/bedgraph.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/clustal.py
%%PYTHON_SITELIBDIR%%/cogent/format/clustal.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/clustal.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/fasta.py
%%PYTHON_SITELIBDIR%%/cogent/format/fasta.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/fasta.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/mage.py
%%PYTHON_SITELIBDIR%%/cogent/format/mage.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/mage.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/motif.py
%%PYTHON_SITELIBDIR%%/cogent/format/motif.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/motif.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/nexus.py
%%PYTHON_SITELIBDIR%%/cogent/format/nexus.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/nexus.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/pdb.py
%%PYTHON_SITELIBDIR%%/cogent/format/pdb.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/pdb.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/pdb_color.py
%%PYTHON_SITELIBDIR%%/cogent/format/pdb_color.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/pdb_color.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/phylip.py
%%PYTHON_SITELIBDIR%%/cogent/format/phylip.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/phylip.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/rna_struct.py
%%PYTHON_SITELIBDIR%%/cogent/format/rna_struct.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/rna_struct.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/stockholm.py
%%PYTHON_SITELIBDIR%%/cogent/format/stockholm.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/stockholm.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/structure.py
%%PYTHON_SITELIBDIR%%/cogent/format/structure.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/structure.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/table.py
%%PYTHON_SITELIBDIR%%/cogent/format/table.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/table.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/text_tree.py
%%PYTHON_SITELIBDIR%%/cogent/format/text_tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/text_tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/format/xyzrn.py
%%PYTHON_SITELIBDIR%%/cogent/format/xyzrn.pyc
%%PYTHON_SITELIBDIR%%/cogent/format/xyzrn.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/distance_transform.py
%%PYTHON_SITELIBDIR%%/cogent/maths/distance_transform.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/distance_transform.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/fit_function.py
%%PYTHON_SITELIBDIR%%/cogent/maths/fit_function.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/fit_function.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/function_optimisation.py
%%PYTHON_SITELIBDIR%%/cogent/maths/function_optimisation.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/function_optimisation.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/geometry.py
%%PYTHON_SITELIBDIR%%/cogent/maths/geometry.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/geometry.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/markov.py
%%PYTHON_SITELIBDIR%%/cogent/maths/markov.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/markov.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/distance.py
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/distance.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix/distance.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_exponentiation.py
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_exponentiation.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_exponentiation.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_logarithm.py
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_logarithm.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/matrix_logarithm.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.py
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/optimisers.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/_period.so
%%PYTHON_SITELIBDIR%%/cogent/maths/period.py
%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/period.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.py
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimisers.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimize.py
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimize.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/scipy_optimize.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/simannealingoptimiser.py
%%PYTHON_SITELIBDIR%%/cogent/maths/simannealingoptimiser.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/simannealingoptimiser.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/solve.py
%%PYTHON_SITELIBDIR%%/cogent/maths/solve.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/solve.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/spatial/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/spatial/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/spatial/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/spatial/ckd3.so
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/alpha_diversity.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/alpha_diversity.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/alpha_diversity.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/adaptor.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/adaptor.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/adaptor.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/get_by_cai.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/get_by_cai.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/get_by_cai.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/jackknife.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/jackknife.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/jackknife.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/util.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/distribution.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/distribution.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/distribution.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/histogram.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/information_criteria.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/kendall.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/ks.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/period.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/special.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/rarefaction.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/rarefaction.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/rarefaction.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/test.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/test.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/test.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/util.py
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/stats/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/svd.py
%%PYTHON_SITELIBDIR%%/cogent/maths/svd.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/svd.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_tree.py
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_unifrac.py
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_unifrac.pyc
%%PYTHON_SITELIBDIR%%/cogent/maths/unifrac/fast_unifrac.pyo
%%PYTHON_SITELIBDIR%%/cogent/motif/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/motif/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/motif/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/motif/k_word.py
%%PYTHON_SITELIBDIR%%/cogent/motif/k_word.pyc
%%PYTHON_SITELIBDIR%%/cogent/motif/k_word.pyo
%%PYTHON_SITELIBDIR%%/cogent/motif/util.py
%%PYTHON_SITELIBDIR%%/cogent/motif/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/motif/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/parse/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/aaindex.py
%%PYTHON_SITELIBDIR%%/cogent/parse/aaindex.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/aaindex.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.py
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/agilent_microarray.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.py
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/binary_sff.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.py
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/blast.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/blast_xml.py
%%PYTHON_SITELIBDIR%%/cogent/parse/blast_xml.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/blast_xml.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/bowtie.py
%%PYTHON_SITELIBDIR%%/cogent/parse/bowtie.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/bowtie.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/bpseq.py
%%PYTHON_SITELIBDIR%%/cogent/parse/bpseq.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/bpseq.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/carnac.py
%%PYTHON_SITELIBDIR%%/cogent/parse/carnac.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/carnac.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/cigar.py
%%PYTHON_SITELIBDIR%%/cogent/parse/cigar.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/cigar.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/clustal.py
%%PYTHON_SITELIBDIR%%/cogent/parse/clustal.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/clustal.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/cmfinder.py
%%PYTHON_SITELIBDIR%%/cogent/parse/cmfinder.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/cmfinder.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/column.py
%%PYTHON_SITELIBDIR%%/cogent/parse/column.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/column.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/comrna.py
%%PYTHON_SITELIBDIR%%/cogent/parse/comrna.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/comrna.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/consan.py
%%PYTHON_SITELIBDIR%%/cogent/parse/consan.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/consan.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/contrafold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/contrafold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/contrafold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/cove.py
%%PYTHON_SITELIBDIR%%/cogent/parse/cove.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/cove.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/ct.py
%%PYTHON_SITELIBDIR%%/cogent/parse/ct.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/ct.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/cut.py
%%PYTHON_SITELIBDIR%%/cogent/parse/cut.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/cut.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/cutg.py
%%PYTHON_SITELIBDIR%%/cogent/parse/cutg.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/cutg.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/dialign.py
%%PYTHON_SITELIBDIR%%/cogent/parse/dialign.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/dialign.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/dotur.py
%%PYTHON_SITELIBDIR%%/cogent/parse/dotur.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/dotur.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/dynalign.py
%%PYTHON_SITELIBDIR%%/cogent/parse/dynalign.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/dynalign.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/ebi.py
%%PYTHON_SITELIBDIR%%/cogent/parse/ebi.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/ebi.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.py
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/fasta.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.py
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/fastq.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.py
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/foldalign.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/gbseq.py
%%PYTHON_SITELIBDIR%%/cogent/parse/gbseq.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/gbseq.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/gcg.py
%%PYTHON_SITELIBDIR%%/cogent/parse/gcg.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/gcg.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/genbank.py
%%PYTHON_SITELIBDIR%%/cogent/parse/genbank.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/genbank.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/gff.py
%%PYTHON_SITELIBDIR%%/cogent/parse/gff.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/gff.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/gibbs.py
%%PYTHON_SITELIBDIR%%/cogent/parse/gibbs.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/gibbs.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/greengenes.py
%%PYTHON_SITELIBDIR%%/cogent/parse/greengenes.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/greengenes.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram.py
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_collection.py
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_collection.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_collection.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.py
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/flowgram_parser.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.py
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/illumina_sequence.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.py
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/ilm.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.py
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/infernal.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_fasta.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_fasta.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_fasta.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_ko.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_pos.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.py
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/kegg_taxonomy.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/knetfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/locuslink.py
%%PYTHON_SITELIBDIR%%/cogent/parse/locuslink.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/locuslink.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/macsim.py
%%PYTHON_SITELIBDIR%%/cogent/parse/macsim.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/macsim.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/mage.py
%%PYTHON_SITELIBDIR%%/cogent/parse/mage.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/mage.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/meme.py
%%PYTHON_SITELIBDIR%%/cogent/parse/meme.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/meme.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/mfold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/mfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/mfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/mothur.py
%%PYTHON_SITELIBDIR%%/cogent/parse/mothur.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/mothur.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/msms.py
%%PYTHON_SITELIBDIR%%/cogent/parse/msms.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/msms.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/ncbi_taxonomy.py
%%PYTHON_SITELIBDIR%%/cogent/parse/ncbi_taxonomy.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/ncbi_taxonomy.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/newick.py
%%PYTHON_SITELIBDIR%%/cogent/parse/newick.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/newick.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/nexus.py
%%PYTHON_SITELIBDIR%%/cogent/parse/nexus.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/nexus.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/nupack.py
%%PYTHON_SITELIBDIR%%/cogent/parse/nupack.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/nupack.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/paml.py
%%PYTHON_SITELIBDIR%%/cogent/parse/paml.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/paml.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/paml_matrix.py
%%PYTHON_SITELIBDIR%%/cogent/parse/paml_matrix.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/paml_matrix.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/pdb.py
%%PYTHON_SITELIBDIR%%/cogent/parse/pdb.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/pdb.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/pfold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/pfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/pfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/phylip.py
%%PYTHON_SITELIBDIR%%/cogent/parse/phylip.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/phylip.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/pknotsrg.py
%%PYTHON_SITELIBDIR%%/cogent/parse/pknotsrg.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/pknotsrg.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/psl.py
%%PYTHON_SITELIBDIR%%/cogent/parse/psl.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/psl.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rdb.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rdb.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rdb.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/record.py
%%PYTHON_SITELIBDIR%%/cogent/parse/record.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/record.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/record_finder.py
%%PYTHON_SITELIBDIR%%/cogent/parse/record_finder.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/record_finder.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rfam.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rfam.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rfam.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_fold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_fold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_fold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_plot.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_plot.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rna_plot.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaalifold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaalifold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaalifold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaforester.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaforester.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaforester.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rnashapes.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rnashapes.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rnashapes.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaview.py
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaview.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/rnaview.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/sequence.py
%%PYTHON_SITELIBDIR%%/cogent/parse/sequence.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/sequence.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/sfold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/sfold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/sfold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/stockholm.py
%%PYTHON_SITELIBDIR%%/cogent/parse/stockholm.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/stockholm.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/sprinzl.py
%%PYTHON_SITELIBDIR%%/cogent/parse/sprinzl.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/sprinzl.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/stride.py
%%PYTHON_SITELIBDIR%%/cogent/parse/stride.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/stride.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/structure.py
%%PYTHON_SITELIBDIR%%/cogent/parse/structure.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/structure.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/table.py
%%PYTHON_SITELIBDIR%%/cogent/parse/table.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/table.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/tinyseq.py
%%PYTHON_SITELIBDIR%%/cogent/parse/tinyseq.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/tinyseq.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/tree.py
%%PYTHON_SITELIBDIR%%/cogent/parse/tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/tree_xml.py
%%PYTHON_SITELIBDIR%%/cogent/parse/tree_xml.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/tree_xml.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.py
%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/unafold.pyo
%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.py
%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.pyc
%%PYTHON_SITELIBDIR%%/cogent/parse/unigene.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/consensus.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/distance.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/least_squares.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/maximum_likelihood.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/nj.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_collection.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/tree_space.pyo
%%PYTHON_SITELIBDIR%%/cogent/phylo/util.py
%%PYTHON_SITELIBDIR%%/cogent/phylo/util.pyc
%%PYTHON_SITELIBDIR%%/cogent/phylo/util.pyo
%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/recalculation/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.py
%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.pyc
%%PYTHON_SITELIBDIR%%/cogent/recalculation/calculation.pyo
%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.py
%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.pyc
%%PYTHON_SITELIBDIR%%/cogent/recalculation/definition.pyo
%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.py
%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.pyc
%%PYTHON_SITELIBDIR%%/cogent/recalculation/scope.pyo
%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.py
%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.pyc
%%PYTHON_SITELIBDIR%%/cogent/recalculation/setting.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/analysis.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/birth_death.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/markov.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/microarray_normalize.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/randomization.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/searchpath.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/sequence_generators.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/tree.pyo
%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.py
%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.pyc
%%PYTHON_SITELIBDIR%%/cogent/seqsim/usage.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/_asa.so
%%PYTHON_SITELIBDIR%%/cogent/struct/_contact.so
%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.py
%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/annotation.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/asa.py
%%PYTHON_SITELIBDIR%%/cogent/struct/asa.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/asa.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/contact.py
%%PYTHON_SITELIBDIR%%/cogent/struct/contact.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/contact.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.py
%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/dihedral.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/knots.py
%%PYTHON_SITELIBDIR%%/cogent/struct/knots.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/knots.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.py
%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/manipulation.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.py
%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/pairs_util.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.py
%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/rna2d.pyo
%%PYTHON_SITELIBDIR%%/cogent/struct/selection.py
%%PYTHON_SITELIBDIR%%/cogent/struct/selection.pyc
%%PYTHON_SITELIBDIR%%/cogent/struct/selection.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/__init__.py
%%PYTHON_SITELIBDIR%%/cogent/util/__init__.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/__init__.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/array.py
%%PYTHON_SITELIBDIR%%/cogent/util/array.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/array.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.py
%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/checkpointing.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.py
%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/datatypes.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.py
%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/dict2d.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.py
%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/dict_array.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/misc.py
%%PYTHON_SITELIBDIR%%/cogent/util/misc.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/misc.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/modules.py
%%PYTHON_SITELIBDIR%%/cogent/util/modules.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/modules.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/option_parsing.py
%%PYTHON_SITELIBDIR%%/cogent/util/option_parsing.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/option_parsing.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/organizer.py
%%PYTHON_SITELIBDIR%%/cogent/util/organizer.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/organizer.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.py
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/parallel.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.py
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/progress_display.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.py
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/recode_alignment.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/table.py
%%PYTHON_SITELIBDIR%%/cogent/util/table.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/table.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.py
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/terminal.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/transform.py
%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/transform.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/trie.py
%%PYTHON_SITELIBDIR%%/cogent/util/trie.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/trie.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.py
%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/unit_test.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/update_version.py
%%PYTHON_SITELIBDIR%%/cogent/util/update_version.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/update_version.pyo
%%PYTHON_SITELIBDIR%%/cogent/util/warning.py
%%PYTHON_SITELIBDIR%%/cogent/util/warning.pyc
%%PYTHON_SITELIBDIR%%/cogent/util/warning.pyo
@dirrm %%PYTHON_SITELIBDIR%%/cogent/align/weights
@dirrm %%PYTHON_SITELIBDIR%%/cogent/align
@dirrm %%PYTHON_SITELIBDIR%%/cogent/app
@dirrm %%PYTHON_SITELIBDIR%%/cogent/cluster
@dirrm %%PYTHON_SITELIBDIR%%/cogent/core
@dirrm %%PYTHON_SITELIBDIR%%/cogent/data
@dirrm %%PYTHON_SITELIBDIR%%/cogent/db/ensembl
@dirrm %%PYTHON_SITELIBDIR%%/cogent/db
@dirrm %%PYTHON_SITELIBDIR%%/cogent/draw
@dirrm %%PYTHON_SITELIBDIR%%/cogent/evolve
@dirrm %%PYTHON_SITELIBDIR%%/cogent/format
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/matrix
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/spatial
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats/cai
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/stats
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths/unifrac
@dirrm %%PYTHON_SITELIBDIR%%/cogent/maths
@dirrm %%PYTHON_SITELIBDIR%%/cogent/motif
@dirrm %%PYTHON_SITELIBDIR%%/cogent/parse
@dirrm %%PYTHON_SITELIBDIR%%/cogent/phylo
@dirrm %%PYTHON_SITELIBDIR%%/cogent/recalculation
@dirrm %%PYTHON_SITELIBDIR%%/cogent/seqsim
@dirrm %%PYTHON_SITELIBDIR%%/cogent/struct
@dirrm %%PYTHON_SITELIBDIR%%/cogent/util
@dirrm %%PYTHON_SITELIBDIR%%/cogent/