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include/seqan/misc/priority_type_heap.h
include/seqan/misc/set.h
include/seqan/misc/svg.h
include/seqan/misc/terminal.h
include/seqan/misc/union_find.h
include/seqan/modifier.h
include/seqan/modifier/cyclic_shape.h
include/seqan/modifier/modifier_alphabet.h
include/seqan/modifier/modifier_alphabet_expansion.h
include/seqan/modifier/modifier_cyclic_shape.h
include/seqan/modifier/modifier_functors.h
include/seqan/modifier/modifier_iterator.h
include/seqan/modifier/modifier_padding.h
include/seqan/modifier/modifier_position.h
include/seqan/modifier/modifier_reverse.h
include/seqan/modifier/modifier_shortcuts.h
include/seqan/modifier/modifier_string.h
include/seqan/modifier/modifier_view.h
include/seqan/parallel.h
include/seqan/parallel/enumerable_thread_local.h
include/seqan/parallel/enumerable_thread_local_iterator.h
include/seqan/parallel/parallel_algorithms.h
include/seqan/parallel/parallel_atomic_misc.h
include/seqan/parallel/parallel_atomic_primitives.h
include/seqan/parallel/parallel_lock.h
include/seqan/parallel/parallel_macros.h
include/seqan/parallel/parallel_queue.h
include/seqan/parallel/parallel_queue_suspendable.h
include/seqan/parallel/parallel_resource_pool.h
include/seqan/parallel/parallel_sequence.h
include/seqan/parallel/parallel_serializer.h
include/seqan/parallel/parallel_splitting.h
include/seqan/parallel/parallel_tags.h
include/seqan/parallel/parallel_thread_pool.h
include/seqan/parse_lm.h
include/seqan/parse_lm/local_match_store.h
include/seqan/parse_lm/parse_blastn_tabular.h
include/seqan/parse_lm/parse_lastz_general.h
include/seqan/parse_lm/parse_stellar_gff.h
include/seqan/pipe.h
include/seqan/pipe/pipe_base.h
include/seqan/pipe/pipe_caster.h
include/seqan/pipe/pipe_counter.h
include/seqan/pipe/pipe_echoer.h
include/seqan/pipe/pipe_edit_environment.h
include/seqan/pipe/pipe_filter.h
include/seqan/pipe/pipe_iterator.h
include/seqan/pipe/pipe_joiner.h
include/seqan/pipe/pipe_namer.h
include/seqan/pipe/pipe_sampler.h
include/seqan/pipe/pipe_shifter.h
include/seqan/pipe/pipe_source.h
include/seqan/pipe/pipe_tupler.h
include/seqan/pipe/pool_base.h
include/seqan/pipe/pool_mapper.h
include/seqan/pipe/pool_sorter.h
include/seqan/platform.h
include/seqan/random.h
include/seqan/random/random_base.h
include/seqan/random/random_beta.h
include/seqan/random/random_util.h
include/seqan/realign.h
include/seqan/realign/realign_base.h
include/seqan/realign/realign_helper_functions.h
include/seqan/reduced_aminoacid.h
include/seqan/reduced_aminoacid/reduced_aminoacid_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_base_late.h
include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_buchfink11_tables.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cannata10_tables.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
include/seqan/reduced_aminoacid/reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
include/seqan/reduced_aminoacid/reduced_aminoacid_li10_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_li10_tables.h
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy10_tables.h
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_murphy5_tables.h
include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_base.h
include/seqan/reduced_aminoacid/reduced_aminoacid_solis10_tables.h
include/seqan/rna_io.h
include/seqan/rna_io/bpseq_read_write.h
include/seqan/rna_io/connect_read_write.h
include/seqan/rna_io/dot_bracket_read_write.h
include/seqan/rna_io/ebpseq_read_write.h
include/seqan/rna_io/rna_header.h
include/seqan/rna_io/rna_io_context.h
include/seqan/rna_io/rna_record.h
include/seqan/rna_io/rna_struct_file.h
include/seqan/rna_io/stockholm_read_write.h
include/seqan/rna_io/vienna_read_write.h
include/seqan/roi_io.h
include/seqan/roi_io/read_roi.h
include/seqan/roi_io/roi_file.h
include/seqan/roi_io/roi_io_context.h
include/seqan/roi_io/roi_record.h
include/seqan/roi_io/write_roi.h
include/seqan/score.h
include/seqan/score/score_base.h
include/seqan/score/score_edit.h
include/seqan/score/score_matrix.h
include/seqan/score/score_matrix_data.h
include/seqan/score/score_matrix_dyn.h
include/seqan/score/score_matrix_io.h
include/seqan/score/score_simd_wrapper.h
include/seqan/score/score_simple.h
include/seqan/seeds.h
include/seqan/seeds/banded_chain_alignment.h
include/seqan/seeds/banded_chain_alignment_impl.h
include/seqan/seeds/banded_chain_alignment_profile.h
include/seqan/seeds/banded_chain_alignment_scout.h
include/seqan/seeds/banded_chain_alignment_traceback.h
include/seqan/seeds/basic_iter_indirect.h
include/seqan/seeds/seeds_base.h
include/seqan/seeds/seeds_combination.h
include/seqan/seeds/seeds_extension.h
include/seqan/seeds/seeds_global_chaining.h
include/seqan/seeds/seeds_global_chaining_base.h
include/seqan/seeds/seeds_global_chaining_gusfield.h
include/seqan/seeds/seeds_seed_base.h
include/seqan/seeds/seeds_seed_chained.h
include/seqan/seeds/seeds_seed_diagonal.h
include/seqan/seeds/seeds_seed_set_base.h
include/seqan/seeds/seeds_seed_set_non_scored.h
include/seqan/seeds/seeds_seed_set_scored.h
include/seqan/seeds/seeds_seed_set_unordered.h
include/seqan/seeds/seeds_seed_simple.h
include/seqan/seq_io.h
include/seqan/seq_io/bam_sam.h
include/seqan/seq_io/fai_index.h
include/seqan/seq_io/fasta_fastq.h
include/seqan/seq_io/genomic_region.h
include/seqan/seq_io/read_embl.h
include/seqan/seq_io/read_genbank.h
include/seqan/seq_io/sequence_file.h
include/seqan/sequence.h
include/seqan/sequence/adapt_array_pointer.h
include/seqan/sequence/adapt_stl_container.h
include/seqan/sequence/container_view.h
include/seqan/sequence/container_view_zip.h
include/seqan/sequence/iter_concat_virtual.h
include/seqan/sequence/segment_base.h
include/seqan/sequence/segment_infix.h
include/seqan/sequence/segment_prefix.h
include/seqan/sequence/segment_suffix.h
include/seqan/sequence/segment_utils.h
include/seqan/sequence/sequence_concatenator.h
include/seqan/sequence/sequence_forwards.h
include/seqan/sequence/sequence_interface.h
include/seqan/sequence/sequence_lexical.h
include/seqan/sequence/sequence_shortcuts.h
include/seqan/sequence/string_alloc.h
include/seqan/sequence/string_array.h
include/seqan/sequence/string_base.h
include/seqan/sequence/string_block.h
include/seqan/sequence/string_cstyle.h
include/seqan/sequence/string_packed.h
include/seqan/sequence/string_packed_old.h
include/seqan/sequence/string_set_base.h
include/seqan/sequence/string_set_concat_direct.h
include/seqan/sequence/string_set_dependent_generous.h
include/seqan/sequence/string_set_dependent_tight.h
include/seqan/sequence/string_set_owner.h
include/seqan/sequence/string_set_segment.h
include/seqan/sequence/string_set_view.h
include/seqan/sequence_journaled.h
include/seqan/sequence_journaled/journal_entries_sorted_array.h
include/seqan/sequence_journaled/journal_entry.h
include/seqan/sequence_journaled/sequence_journaled.h
include/seqan/sequence_journaled/sequence_journaled_iterator.h
include/seqan/sequence_journaled/sequence_journaled_iterator_fast.h
include/seqan/simd.h
include/seqan/simd/simd_base.h
include/seqan/simd/simd_base_seqan_impl.h
include/seqan/simd/simd_base_seqan_impl_avx2.h
include/seqan/simd/simd_base_seqan_impl_avx512.h
include/seqan/simd/simd_base_seqan_impl_sse4.2.h
include/seqan/simd/simd_base_seqan_interface.h
include/seqan/simd/simd_base_umesimd_impl.h
include/seqan/simple_intervals_io.h
include/seqan/simple_intervals_io/simple_intervals_file.h
include/seqan/simple_intervals_io/simple_intervals_io.h
include/seqan/statistics.h
include/seqan/statistics/statistics_base.h
include/seqan/statistics/statistics_markov_model.h
include/seqan/store.h
include/seqan/store/store_align.h
include/seqan/store/store_align_intervals.h
include/seqan/store/store_all.h
include/seqan/store/store_annotation.h
include/seqan/store/store_base.h
include/seqan/store/store_contig.h
include/seqan/store/store_intervaltree.h
include/seqan/store/store_io.h
include/seqan/store/store_io_gff.h
include/seqan/store/store_io_sam.h
include/seqan/store/store_io_ucsc.h
include/seqan/store/store_library.h
include/seqan/store/store_matepair.h
include/seqan/store/store_read.h
include/seqan/stream.h
include/seqan/stream/adapt_ios.h
include/seqan/stream/buffered_stream.h
include/seqan/stream/file_stream.h
include/seqan/stream/formatted_file.h
include/seqan/stream/guess_format.h
include/seqan/stream/iostream_bgzf.h
include/seqan/stream/iostream_bzip2.h
include/seqan/stream/iostream_bzip2_impl.h
include/seqan/stream/iostream_zip.h
include/seqan/stream/iostream_zip_impl.h
include/seqan/stream/iostream_zutil.h
include/seqan/stream/iter_stream.h
include/seqan/stream/lexical_cast.h
include/seqan/stream/stream_base.h
include/seqan/stream/stream_compressor.h
include/seqan/stream/tokenization.h
include/seqan/stream/virtual_stream.h
include/seqan/system.h
include/seqan/system/file_async.h
include/seqan/system/file_directory.h
include/seqan/system/file_forwards.h
include/seqan/system/file_sync.h
include/seqan/system/system_base.h
include/seqan/system/system_event_win.h
include/seqan/system/system_forwards.h
include/seqan/tabix_io.h
include/seqan/tabix_io/tabix_index_tbi.h
include/seqan/translation.h
include/seqan/translation/translation.h
include/seqan/translation/translation_tables.h
include/seqan/ucsc_io.h
include/seqan/ucsc_io/ucsc_file.h
include/seqan/ucsc_io/ucsc_io.h
include/seqan/ucsc_io/ucsc_record.h
include/seqan/vcf_io.h
include/seqan/vcf_io/read_vcf.h
include/seqan/vcf_io/vcf_file.h
include/seqan/vcf_io/vcf_header.h
include/seqan/vcf_io/vcf_header_record.h
include/seqan/vcf_io/vcf_io_context.h
include/seqan/vcf_io/vcf_record.h
include/seqan/vcf_io/write_vcf.h
include/seqan/version.h
lib/cmake/seqan/seqan-config.cmake
libdata/pkgconfig/seqan-2.pc