bin/smithwaterman include/smithwaterman/BandedSmithWaterman.h include/smithwaterman/IndelAllele.h include/smithwaterman/LeftAlign.h include/smithwaterman/Mosaik.h include/smithwaterman/Repeats.h include/smithwaterman/SmithWatermanGotoh.h include/smithwaterman/convert.h include/smithwaterman/disorder.h lib/libsw.a lib/libsw.so lib/libsw.so.1