bin/clone_filter
bin/count_fixed_catalog_snps.py
bin/cstacks
bin/denovo_map.pl
bin/exec_velvet.pl
bin/export_sql.pl
bin/genotypes
bin/index_radtags.pl
bin/integrate_alignments.py
bin/kmer_filter
bin/load_radtags.pl
bin/load_sequences.pl
bin/phasedstacks
bin/populations
bin/process_radtags
bin/process_shortreads
bin/pstacks
bin/ref_map.pl
bin/rxstacks
bin/sort_read_pairs.pl
bin/sstacks
bin/stacks_export_notify.pl
bin/ustacks
%%DATADIR%%/php/CatalogClass.php
%%DATADIR%%/php/Locus.php
%%DATADIR%%/php/ajax.js
%%DATADIR%%/php/annotate.js
%%DATADIR%%/php/annotate_marker.php
%%DATADIR%%/php/catalog.php
%%DATADIR%%/php/catalog_genotypes.php
%%DATADIR%%/php/constants.php.dist
%%DATADIR%%/php/correct_genotype.php
%%DATADIR%%/php/correct_genotypes.php
%%DATADIR%%/php/db_functions.php
%%DATADIR%%/php/export.js
%%DATADIR%%/php/export_batch.php
%%DATADIR%%/php/fst_view.php
%%DATADIR%%/php/hapstat_view.php
%%DATADIR%%/php/header.php
%%DATADIR%%/php/images/caret-d.png
%%DATADIR%%/php/images/caret-u.png
%%DATADIR%%/php/images/excel_icon.png
%%DATADIR%%/php/images/l-arrow-disabled.png
%%DATADIR%%/php/images/l-arrow.png
%%DATADIR%%/php/images/r-arrow-disabled.png
%%DATADIR%%/php/images/r-arrow.png
%%DATADIR%%/php/images/stacks_bg.png
%%DATADIR%%/php/images/stacks_logo_rev_small.png
%%DATADIR%%/php/index.php
%%DATADIR%%/php/last_modified.php
%%DATADIR%%/php/phist_view.php
%%DATADIR%%/php/pop_view.php
%%DATADIR%%/php/population_view.js
%%DATADIR%%/php/samples.php
%%DATADIR%%/php/sequence_blast.php
%%DATADIR%%/php/stack_view.php
%%DATADIR%%/php/stacks.css
%%DATADIR%%/php/stacks.js
%%DATADIR%%/php/stacks_functions.php
%%DATADIR%%/php/sumstat_view.php
%%DATADIR%%/php/tag.php
%%DATADIR%%/php/tags.php
%%DATADIR%%/php/version.php
%%DATADIR%%/php/view_sequence.php
%%DATADIR%%/sql/catalog_index.sql
%%DATADIR%%/sql/chr_index.sql
%%DATADIR%%/sql/mysql.cnf.dist
%%DATADIR%%/sql/stacks.sql
%%DATADIR%%/sql/tag_index.sql
@dir %%DATADIR%%/php/export