# New ports collection makefile for:	tRNAscan-SE
# Date created:				15 Jan 2002
# Whom:					chuynh@biolateral.com.au
#
# $FreeBSD$
#

PORTNAME=	tRNAscan-SE
PORTVERSION=	1.23
PORTREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	ftp://selab.janelia.org/pub/software/tRNAscan-SE/
EXTRACT_SUFX=	.tar.Z

MAINTAINER=	ports@FreeBSD.org
COMMENT=	An improved tool for transfer RNA detection

USE_PERL5=	yes
MAKE_ARGS=	BINDIR="${PREFIX}/bin" \
		LIBDIR="${DATADIR}" \
		CC="${CC}" \
		CFLAGS="${CFLAGS}"

MAN1=		tRNAscan-SE.1

post-patch:
	@${REINPLACE_CMD} -e 's|tRNAscanSE setpaths|tRNAscanSE|g ; \
		 s|if tRNAscan-SE|if ./tRNAscan-SE|g' ${WRKSRC}/Makefile

do-install:
.for f in covels-SE coves-SE eufindtRNA trnascan-1.4
	${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
	${INSTALL_SCRIPT} ${WRKSRC}/tRNAscan-SE ${PREFIX}/bin
	${INSTALL_MAN} ${WRKSRC}/tRNAscan-SE.man ${MANPREFIX}/man/man1/tRNAscan-SE.1
	@${MKDIR} ${DATADIR}
.for f in TPCsignal Dsignal *.cm gcode.*
	${INSTALL_DATA} ${WRKSRC}/${f} ${DATADIR}
.endfor

#
# have to install before testing as path to data files is hardcoded
#
post-install:
	@ cd ${WRKSRC} && $(MAKE) testrun
.if !defined(NOPORTDOCS)
	@${MKDIR} ${DOCSDIR}
	${INSTALL_DATA} ${WRKSRC}/Manual.ps ${DOCSDIR}
.endif

.include <bsd.port.mk>