--- discover.cpp.orig 2020-07-27 13:45:38 UTC +++ discover.cpp @@ -352,7 +352,7 @@ class Igor : Program //already present free(qname); } - kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; + kh_val(reads, k) = {(int32_t)bam_get_pos1(s), (int32_t)bam_get_pos1(s)+bam_get_l_qseq(s)-1}; } } else