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--- Makefile.orig 2020-10-18 13:31:52 UTC
+++ Makefile
@@ -45,7 +45,8 @@ OBJS = main.o vcfindex.o tabix.o \
ccall.o em.o prob1.o kmin.o # the original samtools calling
PLUGIN_OBJS = vcfplugin.o
-prefix = /usr/local
+PREFIX ?= /usr/local
+prefix = $(PREFIX)
exec_prefix = $(prefix)
bindir = $(exec_prefix)/bin
libdir = $(exec_prefix)/lib
@@ -58,13 +59,14 @@ pluginpath = $(plugindir)
# Installation location for $(MISC_PROGRAMS) and $(MISC_SCRIPTS)
misc_bindir = $(bindir)
-MKDIR_P = mkdir -p
-INSTALL = install -p
-INSTALL_DATA = $(INSTALL) -m 644
-INSTALL_DIR = $(MKDIR_P) -m 755
-INSTALL_MAN = $(INSTALL_DATA)
-INSTALL_PROGRAM = $(INSTALL)
-INSTALL_SCRIPT = $(INSTALL_PROGRAM)
+# Use BSD_INSTALL_PROGRAM to strip when WITH_DEBUG not set
+MKDIR_P = mkdir -p
+INSTALL = install -p
+INSTALL_DATA = ${BSD_INSTALL_DATA}
+INSTALL_DIR = $(MKDIR_P)
+INSTALL_MAN = ${BSD_INSTALL_MAN}
+INSTALL_PROGRAM = ${BSD_INSTALL_PROGRAM}
+INSTALL_SCRIPT = ${BSD_INSTALL_SCRIPT}
PROGRAMS = bcftools
MISC_SCRIPTS = \
@@ -142,7 +144,7 @@ print-version:
ifdef USE_GPL
main.o : EXTRA_CPPFLAGS += -DUSE_GPL
OBJS += polysomy.o peakfit.o
- GSL_LIBS ?= -lgsl -lcblas
+ GSL_LIBS ?= -lgslcblas
endif
print-%:
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