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PORTNAME= ngs
DISTVERSION= 2.11.2
CATEGORIES= biology
PKGNAMESUFFIX= -sdk
MAINTAINER= yuri@FreeBSD.org
COMMENT= Tools and libraries for using data in the INSDC Sequence Read Archives
LICENSE= PD
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to configure: unsupported architecture 'FreeBSD'
BROKEN_armv6= fails to configure: unsupported architecture 'FreeBSD':'arm'
BROKEN_armv7= fails to configure: unsupported architecture 'FreeBSD':'arm'
BROKEN_riscv64= fails to configure: unsupported architecture 'FreeBSD'
NOT_FOR_ARCHS= powerpc64
NOT_FOR_ARCHS_REASON= os-arch.prl needs to be taught about powerpc64
USES= compiler:c++11-lang gmake perl5
USE_PERL5= build
USE_LDCONFIG= yes
USE_GITHUB= yes
GH_ACCOUNT= ncbi
HAS_CONFIGURE= yes
CONFIGURE_ARGS= --prefix="${STAGEDIR}${PREFIX}" --build-prefix="${WRKSRC}/build"
ALL_TARGET= ngs-sdk
post-extract:
@cd ${WRKSRC}/ngs-sdk/ngs/unix && ${LN} -s x86_64 amd64
do-install: # install target from the project breaks: https://github.com/ncbi/ngs/issues/34
# install headers
cd ${WRKSRC}/ngs-sdk && ${COPYTREE_SHARE} ngs ${STAGEDIR}${PREFIX}/include
${RM} -r ${STAGEDIR}${PREFIX}/include/ngs/win
# install libraries
cd ${WRKSRC}/build/ngs-sdk/FreeBSD/clang/${ARCH}/rel/lib && ${COPYTREE_SHARE} . ${STAGEDIR}${PREFIX}/lib
# The above command installs broken-looking static libs with symlinks.
# This is intentional, see comments https://github.com/ncbi/ncbi-vdb/issues/36#issuecomment-817990790 This may change in future versions.
# strip
${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libngs-sdk.so.${DISTVERSION}
.include <bsd.port.mk>
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