blob: 3b5f2f8f433b14ede330cc5a9a59e1b60be0b594 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
|
%%SITE_PERL%%/Bio/Phylo.pm
%%SITE_PERL%%/Bio/Phylo/EvolutionaryModels.pm
%%SITE_PERL%%/Bio/Phylo/Factory.pm
%%SITE_PERL%%/Bio/Phylo/Forest.pm
%%SITE_PERL%%/Bio/Phylo/Forest/DrawNode.pm
%%SITE_PERL%%/Bio/Phylo/Forest/DrawTree.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Node.pm
%%SITE_PERL%%/Bio/Phylo/Forest/Tree.pm
%%SITE_PERL%%/Bio/Phylo/Generator.pm
%%SITE_PERL%%/Bio/Phylo/IO.pm
%%SITE_PERL%%/Bio/Phylo/Identifiable.pm
%%SITE_PERL%%/Bio/Phylo/Listable.pm
%%SITE_PERL%%/Bio/Phylo/Manual.pod
%%SITE_PERL%%/Bio/Phylo/Matrices.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Character.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Characters.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/Matrix.pm
%%SITE_PERL%%/Bio/Phylo/Matrices/TypeSafeData.pm
%%SITE_PERL%%/Bio/Phylo/Mediators/TaxaMediator.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna/K80.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna/GTR.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna/HKY85.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna/F81.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna/JC69.pm
%%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/Libxml.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document/Twig.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/Libxml.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element/Twig.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Meta.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Meta/XMLLiteral.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Writable.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Nexml.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Phylip.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Phyloxml.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Table.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Taxlist.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Tolweb.pm
%%SITE_PERL%%/Bio/Phylo/Project.pm
%%SITE_PERL%%/Bio/Phylo/Set.pm
%%SITE_PERL%%/Bio/Phylo/Taxa.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/TaxaLinker.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/Taxon.pm
%%SITE_PERL%%/Bio/Phylo/Taxa/TaxonLinker.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Abstract.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Canvas.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Gif.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Jpeg.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Pdf.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Png.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Processing.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Svg.pm
%%SITE_PERL%%/Bio/Phylo/Treedrawer/Swf.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Abstract.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Cdao.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Fasta.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Hennig86.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Json.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Mrp.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Newick.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexml.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Nexus.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Pagel.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Phylip.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Phyloxml.pm
%%SITE_PERL%%/Bio/Phylo/Util/CONSTANT.pm
%%SITE_PERL%%/Bio/Phylo/Util/Dependency.pm
%%SITE_PERL%%/Bio/Phylo/Util/Exceptions.pm
%%SITE_PERL%%/Bio/Phylo/Util/IDPool.pm
%%SITE_PERL%%/Bio/Phylo/Util/Logger.pm
%%SITE_PERL%%/Bio/Phylo/Util/OptionalInterface.pm
%%SITE_PERL%%/Bio/Phylo/Util/StackTrace.pm
%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo/.packlist
%%SITE_PERL%%/Bio/Phylo/PhyloWS.pm
%%SITE_PERL%%/Bio/Phylo/NeXML/Entities.pm
%%SITE_PERL%%/Bio/Phylo/Unparsers/Rss1.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiocbmeta.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiosearch.pm
%%SITE_PERL%%/Bio/Phylo/Parsers/Ubiometa.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Client.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/Timetree.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/UbioClassificationBank.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/UbioNameBank.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Service/Tolweb.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource.pm
%%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource/Description.pm
@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio-Phylo
@dirrm %%SITE_PERL%%/Bio/Phylo/Util
@dirrm %%SITE_PERL%%/Bio/Phylo/Unparsers
@dirrm %%SITE_PERL%%/Bio/Phylo/Treedrawer
@dirrm %%SITE_PERL%%/Bio/Phylo/Taxa
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Service
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS/Resource
@dirrm %%SITE_PERL%%/Bio/Phylo/PhyloWS
@dirrm %%SITE_PERL%%/Bio/Phylo/Parsers
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/Meta
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Element
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM/Document
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML/DOM
@dirrm %%SITE_PERL%%/Bio/Phylo/NeXML
@dirrm %%SITE_PERL%%/Bio/Phylo/Models/Substitution/Dna
@dirrm %%SITE_PERL%%/Bio/Phylo/Models/Substitution
@dirrm %%SITE_PERL%%/Bio/Phylo/Models
@dirrm %%SITE_PERL%%/Bio/Phylo/Mediators
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype
@dirrm %%SITE_PERL%%/Bio/Phylo/Matrices
@dirrm %%SITE_PERL%%/Bio/Phylo/Forest
@dirrm %%SITE_PERL%%/Bio/Phylo
@dirrmtry %%SITE_PERL%%/Bio
|
