files « ssaha « biology - ports

Mode	Name	Size
-rw-r--r--	patch-GlobalDefinitions.cpp	568	log plain blame
-rw-r--r--	patch-GlobalDefinitions.h	2617	log plain blame
-rw-r--r--	patch-HashTable.cpp	784	log plain blame
-rw-r--r--	patch-HashTableGeneric.cpp	1594	log plain blame
-rw-r--r--	patch-HashTablePacked.cpp	1126	log plain blame
-rw-r--r--	patch-HashTablePacked.h	664	log plain blame
-rw-r--r--	patch-HashTableTranslated.cpp	2655	log plain blame
-rw-r--r--	patch-MatchAligner.cpp	2670	log plain blame
-rw-r--r--	patch-MatchAligner.h	1172	log plain blame
-rw-r--r--	patch-MatchStore.h	2102	log plain blame
-rw-r--r--	patch-MatchStoreGapped.h	807	log plain blame
-rw-r--r--	patch-MatchStoreUngapped.h	436	log plain blame
-rw-r--r--	patch-QueryManager.cpp	1756	log plain blame
-rw-r--r--	patch-QueryManager.h	749	log plain blame
-rw-r--r--	patch-README	409	log plain blame
-rw-r--r--	patch-SSAHAMain.cpp	1998	log plain blame
-rw-r--r--	patch-SSAHAMain.h	794	log plain blame
-rw-r--r--	patch-SequenceEncoder.cpp	2480	log plain blame
-rw-r--r--	patch-SequenceReader.cpp	717	log plain blame
-rw-r--r--	patch-SequenceReader.h	426	log plain blame
-rw-r--r--	patch-SequenceReaderFasta.cpp	1374	log plain blame
-rw-r--r--	patch-SequenceReaderFasta.h	446	log plain blame
-rw-r--r--	patch-SequenceReaderFilter.h	797	log plain blame
-rw-r--r--	patch-SequenceReaderLocal.cpp	1066	log plain blame
-rw-r--r--	patch-SequenceReaderMulti.cpp	1156	log plain blame
-rw-r--r--	patch-SequenceReaderMulti.h	569	log plain blame
-rw-r--r--	patch-SequenceReaderString.h	1027	log plain blame
-rw-r--r--	patch-makefile	629	log plain blame
-rw-r--r--	patch-testHashTableNoOverlap.cpp	5381	log plain blame
-rw-r--r--	patch-testQueryManager.cpp	725	log plain blame
-rw-r--r--	patch-testSequenceReaderFasta.cpp	6364	log plain blame