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# Created by: Dan Siercks <dsiercks@uwm.edu>
PORTNAME= trimmomatic
DISTVERSION= 0.39
CATEGORIES= biology java
MASTER_SITES= http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
DISTNAME= Trimmomatic-${PORTVERSION}
MAINTAINER= jwb@FreeBSD.org
COMMENT= Flexible read trimming tool for Illumina NGS data
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
USES= zip
USE_JAVA= yes
JAVA_RUN= yes
NO_BUILD= yes
NO_ARCH= yes
SUB_FILES= trimmomatic
do-install:
${INSTALL_DATA} ${WRKSRC}/trimmomatic-${PORTVERSION}.jar \
${STAGEDIR}${JAVAJARDIR}/trimmomatic.jar
cd ${WRKSRC} && ${COPYTREE_SHARE} adapters ${STAGEDIR}${DATADIR}
${INSTALL_SCRIPT} ${WRKDIR}/trimmomatic ${STAGEDIR}${PREFIX}/bin
.include <bsd.port.mk>
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