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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2018-11-03 23:16:49 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2018-11-03 23:16:49 +0000 |
| commit | 8503d5208f833b51a8cbcddb5e1c5e35ee6a8064 (patch) | |
| tree | 7bbd4dc04ac8f96a2b8a58967cecb0dcac6fec68 /biology/bowtie | |
| parent | 020f86dfcc79dcec1be7e761e3b4cabd9f122003 (diff) | |
| download | ports-8503d5208f833b51a8cbcddb5e1c5e35ee6a8064.tar.gz ports-8503d5208f833b51a8cbcddb5e1c5e35ee6a8064.zip | |
biology/bowtie: Revert previous commit with missing log message
Notes
Notes:
svn path=/head/; revision=483953
Diffstat (limited to 'biology/bowtie')
| -rw-r--r-- | biology/bowtie/Makefile | 11 | ||||
| -rw-r--r-- | biology/bowtie/files/patch-ebwt.h | 11 |
2 files changed, 5 insertions, 17 deletions
diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile index 5b8aaedd3598..8d486190a122 100644 --- a/biology/bowtie/Makefile +++ b/biology/bowtie/Makefile @@ -1,9 +1,9 @@ # $FreeBSD$ PORTNAME= bowtie +PORTVERSION= 1.1.2 +PORTREVISION= 6 DISTVERSIONPREFIX= v -DISTVERSION= 1.1.2 -PORTREVISION= 7 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org @@ -13,14 +13,13 @@ LICENSE= ART10 # May also work on other 64-bit platforms, but untested ONLY_FOR_ARCHS= amd64 - -USES= gmake perl5 python:run shebangfix # FIXME: bowtie-align intermittently dumps core when compiled with clang # GCC 4.2 does not provide good performance USE_GCC= yes +USES= gmake perl5 python:run shebangfix USE_PERL5= run - -SHEBANG_FILES= scripts/*.pl bowtie bowtie-build bowtie-inspect +SHEBANG_FILES= scripts/*.pl bowtie bowtie-build \ + bowtie-inspect USE_GITHUB= yes GH_ACCOUNT= BenLangmead diff --git a/biology/bowtie/files/patch-ebwt.h b/biology/bowtie/files/patch-ebwt.h deleted file mode 100644 index 4272bbd8303c..000000000000 --- a/biology/bowtie/files/patch-ebwt.h +++ /dev/null @@ -1,11 +0,0 @@ ---- ebwt.h.orig 2018-11-03 20:51:56 UTC -+++ ebwt.h -@@ -860,7 +860,7 @@ public: - TIndexOffU* ftab() const { return _ftab; } - TIndexOffU* eftab() const { return _eftab; } - TIndexOffU* offs() const { return _offs; } -- uint32_t* isa() const { return _isa; } /* check */ -+ uint32_t* isa() const { return (uint32_t)_isa; } /* check */ - TIndexOffU* plen() const { return _plen; } - TIndexOffU* rstarts() const { return _rstarts; } - uint8_t* ebwt() const { return _ebwt; } |