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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-01-11 17:27:30 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-01-11 17:27:30 +0000 |
| commit | bced63b1b352dff0bdfaab9926ceb2d942396587 (patch) | |
| tree | 60ba7ab8fa7420bb68ae2eecf0638cfa2b006a4f /biology/stacks | |
| parent | ef665861634bf69e5cc2f940ce83a278cefbadc1 (diff) | |
| download | ports-bced63b1b352dff0bdfaab9926ceb2d942396587.tar.gz ports-bced63b1b352dff0bdfaab9926ceb2d942396587.zip | |
biology/stacks: Drop dependency on gcc
Replace compiler:openmp with compiler:c++11-lang and localbase
Set USE_GCC for i386 to work around limitations in clang atomic (PR 230888)
PR: port/247753, ports/252379
Notes
Notes:
svn path=/head/; revision=561234
Diffstat (limited to 'biology/stacks')
| -rw-r--r-- | biology/stacks/Makefile | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile index 9bbb1c171b55..4ce7729e121f 100644 --- a/biology/stacks/Makefile +++ b/biology/stacks/Makefile @@ -2,7 +2,7 @@ PORTNAME= stacks DISTVERSION= 2.4 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= biology perl5 python MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/ @@ -12,7 +12,7 @@ COMMENT= Software pipeline for building loci from short-read sequences LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE -USES= compiler:openmp gmake python shebangfix +USES= compiler:c++11-lang gmake python shebangfix SHEBANG_FILES= scripts/*.pl scripts/*.py \ scripts/stacks-integrate-alignments scripts/stacks-gdb @@ -22,8 +22,8 @@ LDFLAGS+= -lpthread .include <bsd.port.pre.mk> -# Force newer GCC on platforms using GCC 4.2 as base -.if ${CHOSEN_COMPILER_TYPE} == gcc +# Temp workaround, see PR 230888 +.if ${ARCH} == i386 USE_GCC= yes .endif |