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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2023-06-27 03:50:12 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2023-06-27 04:41:39 +0000 |
| commit | 5230e317c9a8a5b8e49a97736d920ee8295a2a31 (patch) | |
| tree | d3d5c87006c2f1002242241400a18914775ca333 /biology | |
| parent | 3bafe81da622acda245e530bb9bc9a77a9f02bc3 (diff) | |
| download | ports-5230e317c9a8a5b8e49a97736d920ee8295a2a31.tar.gz ports-5230e317c9a8a5b8e49a97736d920ee8295a2a31.zip | |
biology/ncbi-cxx-toolkit: Update 26.0.1 → 27.0.0
Reported by: portscout
Diffstat (limited to 'biology')
4 files changed, 18 insertions, 16 deletions
diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 2a24528adfbc..51b51e58add4 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,7 +1,6 @@ PORTNAME= ncbi-cxx-toolkit DISTVERSIONPREFIX= release- -DISTVERSION= 26.0.1 -PORTREVISION= 3 +DISTVERSION= 27.0.0 CATEGORIES= biology science devel MAINTAINER= yuri@FreeBSD.org @@ -15,7 +14,9 @@ BROKEN_armv6= platform not defined for FreeBSD arm, see https://github.com/ncbi/ LIB_DEPENDS= libcdd.so:math/cddlib \ liblmdb.so:databases/lmdb \ - libpcre.so:devel/pcre + libpcre.so:devel/pcre \ + libunwind.so:devel/libunwind \ + libzstd.so:archivers/zstd RUN_DEPENDS= bash:shells/bash USES= compiler:c++17-lang gmake mysql perl5 python shebangfix ssl xorg diff --git a/biology/ncbi-cxx-toolkit/distinfo b/biology/ncbi-cxx-toolkit/distinfo index af7c94b0fa38..61f897e153de 100644 --- a/biology/ncbi-cxx-toolkit/distinfo +++ b/biology/ncbi-cxx-toolkit/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1643225773 -SHA256 (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = aba79da5c8d0407ffc92b7831f4f8f8a8096a15e47a016ada81b6568f9d280cc -SIZE (ncbi-ncbi-cxx-toolkit-public-release-26.0.1_GH0.tar.gz) = 103933829 +TIMESTAMP = 1687817071 +SHA256 (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = c8fb3f99c6fce4f170b381f3a7789c76a2ff1c23c094c9852e2e3de1fdc57277 +SIZE (ncbi-ncbi-cxx-toolkit-public-release-27.0.0_GH0.tar.gz) = 57187775 diff --git a/biology/ncbi-cxx-toolkit/files/patch-src_build-system_configure b/biology/ncbi-cxx-toolkit/files/patch-src_build-system_configure deleted file mode 100644 index c6ca30fee2c4..000000000000 --- a/biology/ncbi-cxx-toolkit/files/patch-src_build-system_configure +++ /dev/null @@ -1,10 +0,0 @@ ---- src/build-system/configure.orig 2020-09-27 04:51:28 UTC -+++ src/build-system/configure -@@ -8080,6 +8080,7 @@ case "$compiler:$ncbi_compiler_ver" in - ICC:??.?.? | \ - ICC:??.?.?.* ) ncbi_compiler_sed='s/\([0-9][0-9]\)\.\([0-9]\)\.\([0-9]\).*/\1\2\3/' ;; - *:?.?.?) ncbi_compiler_sed='s/\([0-9]\)\.\([0-9]\)\.\([0-9]\)/\1\2\3/' ;; -+ *:??.?.?) ncbi_compiler_sed='s/\([1-9][0-9]\)\.\([0-9]\)\.\([0-9]\)/\1\2\3/' ;; - *:?.??*) ncbi_compiler_sed='s/\([0-9]\)\.\([0-9][0-9]\).*/\1\2/' ;; - *:?.?) ncbi_compiler_sed='s/\([0-9]\).\([0-9]\)/\1\20/' ;; - *:?) ncbi_compiler_sed='s/\([0-9]\)/\100/' ;; diff --git a/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app b/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app new file mode 100644 index 000000000000..8781ac4b7d09 --- /dev/null +++ b/biology/ncbi-cxx-toolkit/files/patch-src_objtools_edit_pubmed__citmatch_Makefile.pubmed__citmatch.app @@ -0,0 +1,11 @@ +--- src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app.orig 2023-06-26 23:22:57 UTC ++++ src/objtools/edit/pubmed_citmatch/Makefile.pubmed_citmatch.app +@@ -2,7 +2,7 @@ + + APP = pubmed_citmatch + SRC = pubmed_citmatch +-LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch $(SEQ_LIBS) \ ++LIB = $(OBJEDIT_LIBS) mlacli mla eutils uilist efetch seqset $(SEQ_LIBS) \ + pubmed medlars pub medline biblio general xser xconnect xutil xncbi + + LIBS = $(DL_LIBS) $(NETWORK_LIBS) $(ORIG_LIBS) |