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* all: Bump PORTREVISION after lang/go120 updateDmitri Goutnik2023-09-085-5/+5
* all: Bump PORTREVISION after lang/go{119,120} updateDmitri Goutnik2023-08-045-3/+5
* biology/vcflib: not for armv6/7Robert Clausecker2023-07-301-0/+3
* biology/hyphy: fix build on armv7Robert Clausecker2023-06-301-0/+12
* all: remove explicit versions in USES=python for "3.x+"Rene Ladan2023-06-2740-41/+41
* biology/ncbi-cxx-toolkit: Update 26.0.1 → 27.0.0Yuri Victorovich2023-06-274-16/+18
* biology/ngs-sdk: Update 2.11.2 → 3.0.1Yuri Victorovich2023-06-262-5/+5
* biology/py-ete3: Update 3.1.2 → 3.1.3Yuri Victorovich2023-06-262-5/+4
* biology/py-resdk: Update 17.0.0 → 18.0.0Yuri Victorovich2023-06-262-5/+5
* biology/py-pyrodigal: Update 2.1.0 → 2.2.0Yuri Victorovich2023-06-262-4/+6
* biology/py-PySCeS: Update 1.0.3 → 1.1.0Yuri Victorovich2023-06-262-5/+4
* biology/py-python-libsbml: Update 5.19.0 → 5.20.1Yuri Victorovich2023-06-263-5/+2598
* biology/py-deeptools: Update to 3.5.2Jason W. Bacon2023-06-192-5/+4
* biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1Yuri Victorovich2023-06-181-2/+2
* biology/py-pysam: Update 0.20.0 → 0.21.0Yuri Victorovich2023-06-162-6/+5
* biology/chip-seq: Metaport for ChIP-Seq analysisJason W. Bacon2023-06-144-0/+31
* biology/biolibc: Update to 0.2.4.3Jason W. Bacon2023-06-102-4/+5
* biology/peak-classifier: Update to 0.1.4.8Jason W. Bacon2023-06-102-6/+5
* biology/fasda: Update to 0.1.3Jason W. Bacon2023-06-102-4/+4
* biology/biolibc-tools: Update to 0.1.4.6Jason W. Bacon2023-06-102-5/+5
* biology/abyss: Fix build with llvm15Muhammad Moinur Rahman2023-06-071-1/+7
* biology/ncbi-toolkit: Fix build with llvm15Muhammad Moinur Rahman2023-06-061-1/+7
* biology/gatk: Update 4.3.0.0 → 4.4.0.0Yuri Victorovich2023-06-042-8/+10
* biology/fastp: Update to 0.23.4Jason W. Bacon2023-05-312-7/+4
* biology/ncbi-blast+: Tag only for 64-bit architecturesJason W. Bacon2023-05-291-0/+3
* biology/hyphy: Update to 2.5.51hfJoseph Mingrone2023-05-292-4/+4
* biology/libsedml: Fix build with libsbml 5.20.0Po-Chuan Hsieh2023-05-271-0/+11
* biology/libcombine: Fix build with libsbml 5.20.0Po-Chuan Hsieh2023-05-271-0/+11
* biology/libsbml: Update to 5.20.0Po-Chuan Hsieh2023-05-275-566/+199
* biology/ncbi-blast+: Update to 2.14.0Jason W. Bacon2023-05-274-123/+827
* biology/py-pysam: unbundle biology/htslibRobert Clausecker2023-05-251-2/+6
* biology/seqtk: Update to 1.4Jason W. Bacon2023-05-232-4/+4
* biology/py-macs2: Update to 2.2.8Jason W. Bacon2023-05-222-5/+4
* biology/kmcp: Update 0.9.1 → 0.9.2Yuri Victorovich2023-05-222-7/+6
* biology/gff2ps: drop maintainershipVinícius Zavam2023-05-211-1/+1
* biology/biosoup: Update 0.10.0-2 → 0.11.0Yuri Victorovich2023-05-192-6/+4
* */*: llvm15 build fixesMuhammad Moinur Rahman2023-05-172-2/+2
* biology/wise: Unbreak on HEADMuhammad Moinur Rahman2023-05-141-6/+16
* biology/fastp: Update to 0.23.3Jason W. Bacon2023-05-142-5/+6
* biology/biosig: Unbreak on HEADMuhammad Moinur Rahman2023-05-121-1/+7
* biology/py-multiqc: Update to 1.14Jason W. Bacon2023-05-123-28/+15
* biology/phyml: fix build on non-x86Robert Clausecker2023-05-084-2/+100
* www/py-cachecontrol: Fix portPo-Chuan Hsieh2023-05-071-1/+1
* biology/minimap2: Update to 2.25Jason W. Bacon2023-04-293-10/+4
* biology/bedtools: Update to 2.31.0Jason W. Bacon2023-04-292-4/+4
* */*: bump all direct Boost cunsumersDima Panov2023-04-274-4/+4
* biology/py-resdk: Update 16.0.0 → 17.0.0Yuri Victorovich2023-04-272-5/+4
* audio/opus: bump consumers after update to 1.4Christian Weisgerber2023-04-256-5/+6
* *: Bump PORTREVISIONs for math/mpc update to 1.3.1Gerald Pfeifer2023-04-2353-28/+53
* devel/grpc: Update to 1.54.0 (should be part of 8f17596cf5a75f2dca4b4c9f65ba0...Po-Chuan Hsieh2023-04-191-1/+1
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