Adding jupyter-jsmol, a JSmol viewer widget for Jupyter Notebooks and

JupyterLab, to bue used by SageMath 9.3.

5 files changed, 1403 insertions, 0 deletions

diff --git a/science/py-jupyter_jsmol/Makefile b/science/py-jupyter_jsmol/Makefile
new file mode 100644
index 000000000000..6252c895baca
--- /dev/null
+++ b/science/py-jupyter_jsmol/Makefile
@@ -0,0 +1,43 @@
+# Created by: thierry@pompo.net
+# $FreeBSD$
+
+PORTNAME=	jupyter-jsmol
+PORTVERSION=	0.2.4
+DISTVERSIONPREFIX=	v
+CATEGORIES=	science devel python
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+
+MAINTAINER=	thierry@FreeBSD.org
+COMMENT=	JSmol viewer widget for Jupyter Notebooks and JupyterLab
+
+LICENSE=	BSD3CLAUSE
+
+RUN_DEPENDS=	${PY_PYGMENTS} \
+		${PYTHON_PKGNAMEPREFIX}widgetsnbextension>0:devel/py-widgetsnbextension@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}ipykernel5>=5.0.0:devel/py-ipykernel5@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}ipywidgets>0:devel/py-ipywidgets@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}ipython>=7.0.0:devel/ipython@${PY_FLAVOR}
+TEST_DEPENDS=	py.test:devel/py-pytest@${PY_FLAVOR}
+
+USE_GITHUB=	yes
+GH_ACCOUNT=	fekad
+
+USES=		python:3.7+
+USE_PYTHON=	distutils
+PYDISTUTILS_CONFIGUREARGS=	--skip-npm
+PYDISTUTILS_BUILDARGS=		--skip-npm
+
+OPTIONS_DEFINE=	EXAMPLES
+
+PORTEXAMPLES=	*
+PLIST_SUB+=	VER=${PORTVERSION}
+NO_ARCH=	yes
+
+post-install-EXAMPLES-on:
+	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
+	cd ${WRKSRC}/examples && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
+
+do-test: install
+	(cd ${WRKSRC} && py.test)
+
+.include <bsd.port.mk>
diff --git a/science/py-jupyter_jsmol/distinfo b/science/py-jupyter_jsmol/distinfo
new file mode 100644
index 000000000000..c68f4501c700
--- /dev/null
+++ b/science/py-jupyter_jsmol/distinfo
@@ -0,0 +1,3 @@
+TIMESTAMP = 1608293443
+SHA256 (fekad-jupyter-jsmol-v0.2.4_GH0.tar.gz) = 04fc32ccf25a35bb04a029734975cef5f564101277a7878b799c93283691b5fb
+SIZE (fekad-jupyter-jsmol-v0.2.4_GH0.tar.gz) = 17375108
diff --git a/science/py-jupyter_jsmol/pkg-descr b/science/py-jupyter_jsmol/pkg-descr
new file mode 100644
index 000000000000..73a7de477917
--- /dev/null
+++ b/science/py-jupyter_jsmol/pkg-descr
@@ -0,0 +1,3 @@
+JSmol viewer widget which can be used in Jupyter Notebooks and JupyterLab.
+
+WWW: https://github.com/fekad/jupyter-jsmol
diff --git a/science/py-jupyter_jsmol/pkg-message b/science/py-jupyter_jsmol/pkg-message
new file mode 100644
index 000000000000..7a070815421b
--- /dev/null
+++ b/science/py-jupyter_jsmol/pkg-message
@@ -0,0 +1,8 @@
+[
+{ type: install
+  message: <<EOM
+To run the examples, install the ports science/py-pymatgen
+and science/py-ase.
+EOM
+}
+]
diff --git a/science/py-jupyter_jsmol/pkg-plist b/science/py-jupyter_jsmol/pkg-plist
new file mode 100644
index 000000000000..c70040f10b89
--- /dev/null
+++ b/science/py-jupyter_jsmol/pkg-plist
@@ -0,0 +1,1346 @@
+etc/jupyter/nbconfig/notebook.d/jupyter_jsmol.json
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__init__.py
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/_frontend.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/_frontend.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/_version.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/_version.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/pymatgen.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/pymatgen.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/viewer.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/__pycache__/viewer.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/_frontend.py
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/_version.py
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/nbextension/__init__.py
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/nbextension/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.opt-1.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/nbextension/__pycache__/__init__.cpython-%%PYTHON_SUFFIX%%.pyc
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/pymatgen.py
+%%PYTHON_SITELIBDIR%%/jupyter_jsmol/viewer.py
+share/jupyter/nbextensions/jupyter_jsmol/jsmol/JSmol.min.js
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