diff options
Diffstat (limited to 'science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c')
| -rw-r--r-- | science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c b/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c new file mode 100644 index 000000000000..e64cd135c92c --- /dev/null +++ b/science/py-MDAnalysis/files/patch-MDAnalysis_lib_formats_src_xdrfile.c @@ -0,0 +1,46 @@ +- workaround for invalid C/C++ code, see https://github.com/MDAnalysis/mdanalysis/issues/4589 + +--- MDAnalysis/lib/formats/src/xdrfile.c.orig 2024-05-06 20:07:19 UTC ++++ MDAnalysis/lib/formats/src/xdrfile.c +@@ -132,8 +132,8 @@ struct XDR + int (*x_getbytes) (XDR *__xdrs, char *__addr, unsigned int __len); + int (*x_putbytes) (XDR *__xdrs, char *__addr, unsigned int __len); + /* two next routines are not 64-bit IO safe - don't use! */ +- unsigned int (*x_getpostn) (XDR *__xdrs); +- int (*x_setpostn) (XDR *__xdrs, unsigned int __pos); ++ off_t (*x_getpostn) (XDR *__xdrs); ++ off_t (*x_setpostn) (XDR *__xdrs, off_t __pos, int); + void (*x_destroy) (XDR *__xdrs); + } + *x_ops; +@@ -2519,8 +2519,8 @@ static int xdrstdio_putbytes (XDR *, char *, unsigned + static int xdrstdio_putlong (XDR *, int32_t *); + static int xdrstdio_getbytes (XDR *, char *, unsigned int); + static int xdrstdio_putbytes (XDR *, char *, unsigned int); +-static int64_t xdrstdio_getpos (XDR *); +-static int xdrstdio_setpos (XDR *, int64_t, int); ++static off_t xdrstdio_getpos (XDR *); ++static off_t xdrstdio_setpos (XDR *, int64_t, int); + static void xdrstdio_destroy (XDR *); + + /* +@@ -2602,7 +2602,7 @@ xdrstdio_putbytes (XDR *xdrs, char *addr, unsigned int + } + + +-static int64_t ++static off_t + xdrstdio_getpos (XDR *xdrs) + { + #ifdef _WIN32 +@@ -2612,8 +2612,8 @@ xdrstdio_getpos (XDR *xdrs) + #endif + } + +-static int +-xdrstdio_setpos (XDR *xdrs, int64_t pos, int whence) ++static off_t ++xdrstdio_setpos (XDR *xdrs, off_t pos, int whence) + { + /* A reason for failure can be filesystem limits on allocation units, + * before the actual off_t overflow (ext3, with a 4K clustersize, |