path: root/science/afni/pkg-plist

bin/1dApar2mat
bin/1dAstrip
bin/1dBandpass
bin/1dBport
bin/1dCorrelate
bin/1dDW_Grad_o_Mat++
bin/1dFlagMotion
bin/1dGC.R
bin/1dMarry
bin/1dNLfit
bin/1dRplot
bin/1dRplot.R
bin/1dSEM
bin/1dSEMr.R
bin/1dSVAR.R
bin/1dTsort
bin/1dUpsample
bin/1d_tool.py
bin/1dcat
bin/1ddot
bin/1deval
bin/1dfft
bin/1dgenARMA11
bin/1dgrayplot
bin/1dmatcalc
bin/1dnorm
bin/1dplot
bin/1dplot.py
bin/1dsound
bin/1dsum
bin/1dsvd
bin/1dtranspose
bin/24swap
bin/2dImReg
bin/2dcat
bin/2perm
bin/2swap
bin/3dABoverlap
bin/3dAFNIto3D
bin/3dAFNItoANALYZE
bin/3dAFNItoNIFTI
bin/3dAFNItoNIML
bin/3dAFNItoRaw
bin/3dANOVA
bin/3dANOVA2
bin/3dANOVA3
bin/3dAcost
bin/3dAllineate
bin/3dAmpToRSFC
bin/3dAnhist
bin/3dAttribute
bin/3dAutoTcorrelate
bin/3dAutobox
bin/3dAutomask
bin/3dBRAIN_VOYAGERtoAFNI
bin/3dBallMatch
bin/3dBandpass
bin/3dBlurInMask
bin/3dBlurToFWHM
bin/3dBrainSync
bin/3dBrickStat
bin/3dCM
bin/3dCRUISEtoAFNI
bin/3dClipLevel
bin/3dClustCount
bin/3dClustSim
bin/3dClusterize
bin/3dCompareAffine
bin/3dConformist
bin/3dConvolve
bin/3dDFT
bin/3dDTeig
bin/3dDTtoDWI
bin/3dDTtoNoisyDWI
bin/3dDWItoDT
bin/3dDWUncert
bin/3dDeconvolve
bin/3dDegreeCentrality
bin/3dDepthMap
bin/3dDespike
bin/3dDetrend
bin/3dDiff
bin/3dECM
bin/3dEdu_01_scale
bin/3dEigsToDT
bin/3dEmpty
bin/3dEntropy
bin/3dErrtsCormat
bin/3dExchange
bin/3dExtractGroupInCorr
bin/3dExtrema
bin/3dFDR
bin/3dFFT
bin/3dFWHMx
bin/3dFriedman
bin/3dGC.R
bin/3dGenFeatureDist
bin/3dGenPriors
bin/3dGetrow
bin/3dGrayplot
bin/3dGroupInCorr
bin/3dHist
bin/3dICA.R
bin/3dICC
bin/3dICC.R
bin/3dISC
bin/3dISC.R
bin/3dIntracranial
bin/3dInvFMRI
bin/3dKS.R
bin/3dKruskalWallis
bin/3dLFCD
bin/3dLME
bin/3dLME.R
bin/3dLME2
bin/3dLME2.R
bin/3dLMEr
bin/3dLMEr.R
bin/3dLRflip
bin/3dLSS
bin/3dLocalACF
bin/3dLocalBistat
bin/3dLocalHistog
bin/3dLocalPV
bin/3dLocalSVD
bin/3dLocalUnifize
bin/3dLocalstat
bin/3dLombScargle
bin/3dMEMA
bin/3dMEMA.R
bin/3dMEPFM
bin/3dMEPFM.R
bin/3dMSE
bin/3dMSS
bin/3dMSS.R
bin/3dMVM
bin/3dMVM.R
bin/3dMVM_validator
bin/3dMannWhitney
bin/3dMaskToASCII
bin/3dMatch
bin/3dMean
bin/3dMedianFilter
bin/3dMultiThresh
bin/3dNLfim
bin/3dNetCorr
bin/3dNormalityTest
bin/3dNotes
bin/3dNwarpAdjust
bin/3dNwarpApply
bin/3dNwarpCalc
bin/3dNwarpCat
bin/3dNwarpFuncs
bin/3dNwarpXYZ
bin/3dOverlap
bin/3dPAR2AFNI.pl
bin/3dPFM
bin/3dPFM.R
bin/3dPVmap
bin/3dPeriodogram
bin/3dPolyfit
bin/3dPval
bin/3dQwarp
bin/3dREMLfit
bin/3dROIMaker
bin/3dROIstats
bin/3dRSFC
bin/3dRank
bin/3dRankizer
bin/3dReHo
bin/3dRegAna
bin/3dRetinoPhase
bin/3dRowFillin
bin/3dRprogDemo
bin/3dRprogDemo.R
bin/3dSeg
bin/3dSetupGroupInCorr
bin/3dSharpen
bin/3dSignatures
bin/3dSignatures.R
bin/3dSkullStrip
bin/3dSliceNDice
bin/3dSpaceTimeCorr
bin/3dSpatNorm
bin/3dStatClust
bin/3dSurf2Vol
bin/3dSurfMask
bin/3dSynthesize
bin/3dTORTOISEtoHere
bin/3dTRfix
bin/3dTSgen
bin/3dTagalign
bin/3dTcat
bin/3dTcorr1D
bin/3dTcorrMap
bin/3dTcorrelate
bin/3dTfilter
bin/3dTfitter
bin/3dThreetoRGB
bin/3dTnorm
bin/3dToutcount
bin/3dToyProg
bin/3dTproject
bin/3dTqual
bin/3dTrackID
bin/3dTshift
bin/3dTsmooth
bin/3dTsort
bin/3dTsplit4D
bin/3dTstat
bin/3dTto1D
bin/3dTwotoComplex
bin/3dUndump
bin/3dUnifize
bin/3dUpsample
bin/3dVecRGB_to_HSL
bin/3dVol2Surf
bin/3dWarp
bin/3dWarpDrive
bin/3dWilcoxon
bin/3dWinsor
bin/3dXClustSim
bin/3dXYZcat
bin/3dZcat
bin/3dZcutup
bin/3dZeropad
bin/3dZipperZapper
bin/3dZregrid
bin/3danisosmooth
bin/3daxialize
bin/3dbucket
bin/3dcalc
bin/3dclust
bin/3dcopy
bin/3ddelay
bin/3ddot
bin/3ddot_beta
bin/3dedge3
bin/3dedgedog
bin/3dfim+
bin/3dfractionize
bin/3dhistog
bin/3dinfill
bin/3dinfo
bin/3dkmeans
bin/3dmaskSVD
bin/3dmask_tool
bin/3dmaskave
bin/3dmaskdump
bin/3dmatcalc
bin/3dmatmult
bin/3dmaxdisp
bin/3dmaxima
bin/3dmerge
bin/3dnewid
bin/3dnvals
bin/3dpc
bin/3drefit
bin/3drename
bin/3dresample
bin/3dretroicor
bin/3drotate
bin/3dsvm
bin/3dsvm_linpredict
bin/3dtoXdataset
bin/3dttest++
bin/3dvolreg
bin/4swap
bin/@1dDiffMag
bin/@2dwarper
bin/@2dwarper.Allin
bin/@4Daverage
bin/@ANATICOR
bin/@AddEdge
bin/@AfniEnv
bin/@AfniOrient2RAImap
bin/@AfniOrientSign
bin/@Align_Centers
bin/@Atlasize
bin/@Center_Distance
bin/@CheckForAfniDset
bin/@ClustExp_CatLab
bin/@ClustExp_run_shiny
bin/@CommandGlobb
bin/@DO.examples
bin/@DeblankFileNames
bin/@DiceMetric
bin/@DriveAfni
bin/@DriveSuma
bin/@ElectroGrid
bin/@ExamineGenFeatDists
bin/@FS_roi_label
bin/@FSlabel2dset
bin/@FindAfniDsetPath
bin/@FromRAI
bin/@FullPath
bin/@GetAfniBin
bin/@GetAfniDims
bin/@GetAfniID
bin/@GetAfniOrient
bin/@GetAfniPrefix
bin/@GetAfniRes
bin/@GetAfniView
bin/@GradFlipTest
bin/@Install_3dPFM_Demo
bin/@Install_APMULTI_Demo1_rest
bin/@Install_APMULTI_Demo2_realtime
bin/@Install_AfniRetinoDemo
bin/@Install_ClustScat_Demo
bin/@Install_D99_macaque
bin/@Install_DBSproc
bin/@Install_FATCAT_DEMO
bin/@Install_FATCAT_DEMO2
bin/@Install_FATMVM_DEMO
bin/@Install_IBT_DATASETS
bin/@Install_InstaCorr_Demo
bin/@Install_MACAQUE_DEMO
bin/@Install_MACAQUE_DEMO_REST
bin/@Install_MBM_Marmoset
bin/@Install_MEICA_Demo
bin/@Install_NIH_Marmoset
bin/@Install_NMT
bin/@Install_RAT_DEMO_REST
bin/@Install_RSFMRI_Motion_Group_Demo
bin/@Install_SAM_marmoset
bin/@Install_SURFLAYERS_DEMO1
bin/@Install_TSrestMovieDemo
bin/@IsoMasks
bin/@MakeLabelTable
bin/@NoExt
bin/@NoPound
bin/@NoisySkullStrip
bin/@Purify_1D
bin/@Quiet_Talkers
bin/@ROI_Corr_Mat
bin/@ROI_decluster
bin/@ROI_modal_grow
bin/@R_funclist
bin/@RenamePanga
bin/@Reorder
bin/@RetinoProc
bin/@SSwarper
bin/@SUMA_AlignToExperiment
bin/@SUMA_FSvolToBRIK
bin/@SUMA_Make_Spec_Caret
bin/@SUMA_Make_Spec_FS
bin/@SUMA_Make_Spec_SF
bin/@SUMA_renumber_FS
bin/@ScaleVolume
bin/@ScriptCheck
bin/@Shift_Volume
bin/@ShowDynamicRange
bin/@SkullStrip_TouchUp
bin/@Spharm.examples
bin/@SurfSmooth.HEAT_07.examples
bin/@T1scale
bin/@TimeDiff
bin/@ToRAI
bin/@VolCenter
bin/@afni.run.me
bin/@afni_R_package_install
bin/@afni_refacer_make_master
bin/@afni_refacer_make_master_addendum
bin/@afni_refacer_make_onebigA12
bin/@afni_refacer_run
bin/@align_partial_oblique
bin/@animal_warper
bin/@auto_tlrc
bin/@build_afni_Xlib
bin/@chauffeur_afni
bin/@clean_help_dir
bin/@clip_volume
bin/@compute_OC_weights
bin/@compute_gcor
bin/@demo_prompt
bin/@diff.files
bin/@diff.tree
bin/@djunct_4d_imager
bin/@djunct_4d_slices_to_3d_vol
bin/@djunct_anonymize
bin/@djunct_dwi_selector.tcsh
bin/@djunct_edgy_align_check
bin/@djunct_glue_imgs_vert
bin/@djunct_json_value.py
bin/@djunct_modal_smoothing_with_rep
bin/@djunct_montage_coordinator
bin/@djunct_overlap_check
bin/@djunct_slice_space
bin/@djunct_ssw_intermed_edge_imgs
bin/@djunct_vol_3slice_select
bin/@escape-
bin/@extract_meica_ortvec
bin/@fast_roi
bin/@fat_tract_colorize
bin/@fix_FSsphere
bin/@float_fix
bin/@get.afni.version
bin/@global_parse
bin/@grayplot
bin/@help.AFNI
bin/@isOblique
bin/@make_plug_diff
bin/@measure_bb_thick
bin/@measure_erosion_thick
bin/@measure_in2out
bin/@move.to.series.dirs
bin/@np
bin/@parse_afni_name
bin/@parse_name
bin/@radial_correlate
bin/@simulate_motion
bin/@snapshot_volreg
bin/@statauxcode
bin/@suma_acknowledge
bin/@suma_reprefixize_spec
bin/@surf_to_vol_spackle
bin/@thickness_master
bin/@toMNI_Awarp
bin/@toMNI_Qwarpar
bin/@update.afni.binaries
bin/@xyz_to_ijk
bin/AFNI_Batch_R
bin/AFNI_atlas_spaces.niml
bin/AFNI_version.txt
bin/AFNIio.R
bin/AFNIplot.R
bin/AnalyzeTrace
bin/BayesianGroupAna.R
bin/BayesianGroupAna.py
bin/BrainSkin
bin/CMakeLists.txt
bin/ClustExp_HistTable.py
bin/ClustExp_StatParse.py
bin/CompareSurfaces
bin/ConvertDset
bin/ConvertSurface
bin/ConvexHull
bin/CreateIcosahedron
bin/DTIStudioFibertoSegments
bin/Dimon
bin/DriveSuma
bin/ExamineXmat
bin/ExamineXmat.R
bin/FATCAT_matplot
bin/FIRdesign
bin/FSread_annot
bin/FiraCode-Bold.woff2
bin/FiraCode-Regular.woff2
bin/GLTsymtest
bin/HalloSuma
bin/InstaTract
bin/IsoSurface
bin/Level2.R
bin/MBA
bin/MBA.R
bin/MakeColorMap
bin/MapIcosahedron
bin/PTA
bin/PTA.R
bin/ParseName
bin/RBA
bin/RBA.R
bin/ROI2dataset
bin/ROIgrow
bin/RSFgen
bin/RetroTS.py
bin/SUMA_glxdino
bin/SUMA_paperplane
bin/SUMA_pixmap2eps
bin/SampBias
bin/ScaleToMap
bin/Signatures.R
bin/SpharmDeco
bin/SpharmReco
bin/Surf2VolCoord
bin/SurfClust
bin/SurfDist
bin/SurfDsetInfo
bin/SurfExtrema
bin/SurfFWHM
bin/SurfInfo
bin/SurfLayers
bin/SurfLocalstat
bin/SurfMeasures
bin/SurfPatch
bin/SurfQual
bin/SurfRetinoMap
bin/SurfSmooth
bin/SurfToSurf
bin/SurfaceMetrics
bin/TRR
bin/TRR.R
bin/Vecwarp
bin/Xphace
bin/abids_json_info.py
bin/abids_json_tool.py
bin/abids_tool.py
bin/adjunct_apqc_tsnr_general
bin/adjunct_atlas_points_to_labeltable
bin/adjunct_aw_tableize_roi_info.py
bin/adjunct_calc_mont_dims.py
bin/adjunct_combine_str.py
bin/adjunct_deob_around_origin
bin/adjunct_is_label.py
bin/adjunct_make_script_and_rst.py
bin/adjunct_middle_pair_mask
bin/adjunct_select_str.py
bin/adjunct_simplify_cost.py
bin/adjunct_suma_fs_mask_and_qc
bin/adjunct_suma_fs_roi_info
bin/adjunct_tort_plot_dp_align
bin/adjunct_tort_read_dp_align.py
bin/adwarp
bin/afni
bin/afni_check_omp
bin/afni_fs_aparc+aseg_2000.txt
bin/afni_fs_aparc+aseg_2009.txt
bin/afni_history
bin/afni_open
bin/afni_proc.py
bin/afni_python_wrapper.py
bin/afni_run_R
bin/afni_seeds_per_space.txt
bin/afni_skeleton.py
bin/afni_system_check.py
bin/afni_vcheck
bin/afnisumafatcat_logo_128sq.png
bin/afnisumafatcat_logo_905sq.png
bin/afnisumagui_logo_128sq.jpg
bin/afnisumagui_logo_128sq.png
bin/afnisumagui_logo_905sq.jpg
bin/afnisumagui_logo_905sq.png
bin/aiv
bin/align_epi_anat.py
bin/ap_run_simple_rest.tcsh
bin/ap_run_simple_rest_me.tcsh
bin/apqc_logo_help.svg
bin/apqc_logo_main.svg
bin/apqc_make_html.py
bin/apqc_make_tcsh.py
bin/apsearch
bin/auto_warp.py
bin/bayes_view
bin/build_afni.py
bin/byteorder
bin/cat_matvec
bin/ccalc
bin/cifti_tool
bin/column_cat
bin/compute_ROI_stats.tcsh
bin/convert_cdiflist_to_grads.py
bin/count
bin/count_afni
bin/dcm2niix_afni
bin/demo.fixed.niml.do
bin/demo.mobile.niml.do
bin/dicom_hdr
bin/dicom_hinfo
bin/dicom_to_raw
bin/dsetstat2p
bin/eg_main_chrono.py
bin/epi_b0_correct.py
bin/fat_mat2d_plot.py
bin/fat_mat_sel.py
bin/fat_mat_tableize.py
bin/fat_mvm_gridconv.py
bin/fat_mvm_prep.py
bin/fat_mvm_scripter.py
bin/fat_proc_align_anat_pair
bin/fat_proc_axialize_anat
bin/fat_proc_connec_vis
bin/fat_proc_convert_dcm_anat
bin/fat_proc_convert_dcm_dwis
bin/fat_proc_decmap
bin/fat_proc_dwi_to_dt
bin/fat_proc_filter_dwis
bin/fat_proc_imit2w_from_t1w
bin/fat_proc_map_to_dti
bin/fat_proc_select_vols
bin/fat_roi_row.py
bin/fatcat_logo_128sq.jpg
bin/fatcat_logo_128sq.png
bin/fatcat_logo_orig1200sq.png
bin/fdrval
bin/fftest
bin/file_tool
bin/fim2
bin/find_variance_lines.tcsh
bin/float_scan
bin/from3d
bin/gen_cluster_table
bin/gen_epi_review.py
bin/gen_group_command.py
bin/gen_ss_review_scripts.py
bin/gen_ss_review_table.py
bin/get_afni_model_PRF
bin/get_afni_model_PRF_6
bin/get_afni_model_PRF_6_BAD
bin/gifti_tool
bin/gtkyd_check
bin/help_format
bin/im2niml
bin/images_equal
bin/imand
bin/imaver
bin/imcalc
bin/imcat
bin/imcutup
bin/imdump
bin/immask
bin/imreg
bin/imrotate
bin/imstack
bin/imstat
bin/imupsam
bin/init_user_dotfiles.py
bin/inspec
bin/lesion_align
bin/lib_dataTable.R
bin/make_pq_script.py
bin/make_random_timing.py
bin/make_stim_times.py
bin/map_TrackID
bin/meica.py
bin/mycat
bin/myget
bin/neuro_deconvolve.py
bin/nicat
bin/niccc
bin/nifti1_tool
bin/nifti_tool
bin/niml_feedme
bin/niprobe
bin/nsize
bin/open_apqc.py
bin/p2dsetstat
bin/parse_fs_lt_log.py
bin/physio_calc.py
bin/plugout_drive
bin/plugout_ijk
bin/plugout_tt
bin/plugout_tta
bin/prog_list.txt
bin/prog_list_bin.txt
bin/prog_list_scripts.txt
bin/prompt_popup
bin/prompt_user
bin/python_module_test.py
bin/quick.alpha.vals.py
bin/quickspec
bin/quickspecSL
bin/quotize
bin/rPkgsInstall
bin/rPkgsInstall.R
bin/read_matlab_files.py
bin/realtime_receiver.py
bin/rmz
bin/roi_stats_warnings.py
bin/rotcom
bin/rtfeedme
bin/serial_helper
bin/sfim
bin/slow_surf_clustsim.py
bin/smooth.R
bin/sswarper2
bin/stimband
bin/strblast
bin/suma
bin/suma_change_spec
bin/sumagui_logo_128sq.jpg
bin/sumagui_logo_128sq.png
bin/sumagui_logo_905sq.jpg
bin/sumagui_logo_905sq.png
bin/tedana_wrapper.py
bin/test_afni_prog_help.tcsh
bin/tfim
bin/timing_tool.py
bin/to3d
bin/tokens
bin/uber_align_test.py
bin/uber_proc.py
bin/uber_skel.py
bin/uber_subject.py
bin/uber_ttest.py
bin/unWarpEPI.py
bin/uniq_images
bin/waver
bin/whereami
bin/whereami_afni
bin/whirlgif
bin/xmat_tool.py
etc/mri/afni.cshrc
etc/mri/afni.profile
include/afni/3ddata.h
include/afni/AFNI_label.h
include/afni/Amalloc.h
include/afni/Aomp.h
include/afni/afni_environ.h
include/afni/afni_suma.h
include/afni/afni_warp.h
include/afni/coxplot.h
include/afni/cs.h
include/afni/cs_qsort_small.h
include/afni/cs_sort_template.h
include/afni/debugtrace.h
include/afni/editvol.h
include/afni/eispack.h
include/afni/f2c.h
include/afni/killer.h
include/afni/list_struct.h
include/afni/machdep.h
include/afni/mcw_glob.h
include/afni/mcw_malloc.h
include/afni/misc_math.h
include/afni/mri_dicom_stuff.h
include/afni/mri_warpfield.h
include/afni/mrilib.h
include/afni/multivector.h
include/afni/nifti1.h
include/afni/nifti2.h
include/afni/nifti2_io.h
include/afni/nifticdf.h
include/afni/niml.h
include/afni/r_idisp.h
include/afni/r_misc.h
include/afni/r_new_resam_dset.h
include/afni/rcmat.h
include/afni/tagset.h
include/afni/thd_atlas.h
include/afni/thd_compress.h
include/afni/thd_depth_map_edt.h
include/afni/thd_edge_dog.h
include/afni/thd_iochan.h
include/afni/thd_maker.h
include/afni/thd_ttatlas_CA_EZ.h
include/afni/thd_ttatlas_query.h
include/afni/vecmat.h
include/afni/vol2surf.h
include/afni/znzlib.h
lib/afni/R_io.so
lib/afni/libGLws.a
lib/afni/libSUMA.a
lib/afni/libcoxplot.a
lib/afni/libmri.a
lib/afni/libmrix.a
lib/afni/model_beta.so
lib/afni/model_constant.so
lib/afni/model_conv_PRF.so
lib/afni/model_conv_PRF_6.so
lib/afni/model_conv_PRF_6_BAD.so
lib/afni/model_conv_PRF_DOG.so
lib/afni/model_conv_cosine4.so
lib/afni/model_conv_diffgamma.so
lib/afni/model_convgamma.so
lib/afni/model_convgamma2a.so
lib/afni/model_demri_3.so
lib/afni/model_diffexp.so
lib/afni/model_diffusion.so
lib/afni/model_exp.so
lib/afni/model_expMEMRI.so
lib/afni/model_expMEMRI3.so
lib/afni/model_expr2.so
lib/afni/model_gammavar.so
lib/afni/model_linear.so
lib/afni/model_linplusort.so
lib/afni/model_michaelis_menton.so
lib/afni/model_null.so
lib/afni/model_quadratic.so
lib/afni/model_sinewave_ap.so
lib/afni/model_sinewave_apf.so
lib/afni/model_squarewave_ap.so
lib/afni/model_squarewave_apf.so
lib/afni/model_trnglwave_ap.so
lib/afni/model_trnglwave_apf.so
lib/afni/model_zero.so
lib/afni/plug_3Ddump_V2.so
lib/afni/plug_3ddot.so
lib/afni/plug_3dsvm.so
lib/afni/plug_4Ddump.so
lib/afni/plug_L1fit.so
lib/afni/plug_afnihistory.so
lib/afni/plug_aslA3D3.so
lib/afni/plug_betafit.so
lib/afni/plug_clust.so
lib/afni/plug_compress.so
lib/afni/plug_coorder.so
lib/afni/plug_copy.so
lib/afni/plug_crender.so
lib/afni/plug_deconvolve.so
lib/afni/plug_delay_V2.so
lib/afni/plug_drawdset.so
lib/afni/plug_edit.so
lib/afni/plug_extract.so
lib/afni/plug_fourier.so
lib/afni/plug_hemisub.so
lib/afni/plug_histog.so
lib/afni/plug_histog_multi.so
lib/afni/plug_imreg.so
lib/afni/plug_lsqfit.so
lib/afni/plug_maskave.so
lib/afni/plug_maskcalc.so
lib/afni/plug_maxima.so
lib/afni/plug_nlfit.so
lib/afni/plug_notes.so
lib/afni/plug_nth_dataset.so
lib/afni/plug_nudge.so
lib/afni/plug_permtest.so
lib/afni/plug_power.so
lib/afni/plug_realtime.so
lib/afni/plug_rename.so
lib/afni/plug_reorder.so
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