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PORTNAME= TrimGalore
DISTVERSION= 0.6.5
CATEGORIES= biology perl5 python
PKGNAMEPREFIX= p5-
MAINTAINER= jwb@FreeBSD.org
COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming
LICENSE= GPLv3
LICENSE_FILE= ${WRKSRC}/LICENSE
RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>=2.5:biology/py-cutadapt@${PY_FLAVOR} \
fastqc>0:biology/fastqc
# Future: Can 3.4+ be determined from cutadapt dep?
USES= perl5 python:env,3.4+ shebangfix
USE_PERL5= run
USE_GITHUB= yes
SHEBANG_FILES= trim_galore
GH_ACCOUNT= FelixKrueger
NO_ARCH= yes
NO_BUILD= yes
SUB_FILES= trim_galore-test
do-install:
${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKDIR}/trim_galore-test ${STAGEDIR}${PREFIX}/bin
cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR}
.include <bsd.port.mk>
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