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authorMartin Wilke <miwi@FreeBSD.org>2014-03-13 07:41:34 +0000
committerMartin Wilke <miwi@FreeBSD.org>2014-03-13 07:41:34 +0000
commit059bf913b9f4c970ea84c4f08678edc1089a65b9 (patch)
tree6f1e78cbb9e2478d92b50fcc3708e3f345578fa9
parent1d467014a2cd3fe1e51513b37659b3373d4609e7 (diff)
downloadports-059bf913b9f4c970ea84c4f08678edc1089a65b9.tar.gz
ports-059bf913b9f4c970ea84c4f08678edc1089a65b9.zip
Notes
-rw-r--r--biology/garlic/Makefile2
-rw-r--r--biology/mafft/Makefile2
-rw-r--r--biology/mopac/Makefile2
-rw-r--r--biology/mummer/Makefile2
-rw-r--r--biology/muscle/Makefile2
-rw-r--r--biology/paml/Makefile2
-rw-r--r--biology/phylip/Makefile2
-rw-r--r--biology/pymol/Makefile2
-rw-r--r--biology/velvet/Makefile3
-rw-r--r--biology/xmolwt/Makefile2
10 files changed, 10 insertions, 11 deletions
diff --git a/biology/garlic/Makefile b/biology/garlic/Makefile
index e6260cf07ed6..c59284dcd0fd 100644
--- a/biology/garlic/Makefile
+++ b/biology/garlic/Makefile
@@ -14,7 +14,7 @@ EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX}
MAINTAINER= maho@FreeBSD.org
COMMENT= Molecular viewer, editor, and visualization program
-USE_GMAKE= yes
+USES= gmake
USE_XORG= x11
ALL_TARGET= # empty
diff --git a/biology/mafft/Makefile b/biology/mafft/Makefile
index 8ef06d99f0d4..87b2e322c596 100644
--- a/biology/mafft/Makefile
+++ b/biology/mafft/Makefile
@@ -18,7 +18,7 @@ RUN_DEPENDS= lav2ps:${PORTSDIR}/biology/fasta3
WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}-without-extensions
BUILD_WRKSRC= ${WRKSRC}/core
-USE_GMAKE= yes
+USES= gmake
MAN1= mafft.1 mafft-homologs.1
diff --git a/biology/mopac/Makefile b/biology/mopac/Makefile
index ad1ab10dfcff..a3c0cc10adfc 100644
--- a/biology/mopac/Makefile
+++ b/biology/mopac/Makefile
@@ -14,7 +14,7 @@ COMMENT= Semi-empirical (MNDO, etc.) molecular orbital calculation
LIB_DEPENDS= libf2c.so:${PORTSDIR}/lang/f2c
-USE_GMAKE= yes
+USES= gmake
USE_AUTOTOOLS= aclocal automake autoconf libtool
ACLOCAL_ARGS= -I ${LOCALBASE}/share/aclocal
AUTOMAKE_ARGS= --add-missing --copy
diff --git a/biology/mummer/Makefile b/biology/mummer/Makefile
index 0685d21681bd..4ef47331192e 100644
--- a/biology/mummer/Makefile
+++ b/biology/mummer/Makefile
@@ -10,7 +10,7 @@ DISTNAME= MUMmer${PORTVERSION}
MAINTAINER= sylvio@FreeBSD.org
COMMENT= A modular system for rapid whole genome alignment
-USE_GMAKE= yes
+USES= gmake
PROGRAMS= annotate combineMUMs delta-filter gaps \
mgaps mummer repeat-match show-aligns \
diff --git a/biology/muscle/Makefile b/biology/muscle/Makefile
index eb39f1a540bb..224eada0040e 100644
--- a/biology/muscle/Makefile
+++ b/biology/muscle/Makefile
@@ -22,7 +22,7 @@ COMMENT= Multiple Sequence Comparison by Log-Expectation
FETCH_ARGS= -A
-USE_GMAKE= yes
+USES= gmake
USE_DOS2UNIX= *.cpp
PLIST_FILES= bin/muscle
diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index ceb3bde4eaf4..74d9c54e1df5 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -10,7 +10,7 @@ DISTNAME= ${PORTNAME}${PORTVERSION}
MAINTAINER= wen@FreeBSD.org
COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML)
-USE_GMAKE= YES
+USES= gmake
WRKSRC= ${WRKDIR}/${PORTNAME}44/src
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}"
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
index 93af0d8eaa54..dcae4f991c4e 100644
--- a/biology/phylip/Makefile
+++ b/biology/phylip/Makefile
@@ -19,7 +19,7 @@ BUILD_WRKSRC= ${WRKSRC}/src
INSTALL_WRKSRC= ${WRKSRC}/src
USE_XORG= x11 xaw xt
-USE_GMAKE= yes
+USES= gmake
MAKEFILE= Makefile.unx
MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile
index 905999115534..c8bc6132bc69 100644
--- a/biology/pymol/Makefile
+++ b/biology/pymol/Makefile
@@ -22,7 +22,7 @@ SVNREVISION= 3978
USE_BZIP2= yes
WRKSRC= ${WRKDIR}/pymol-${PORTVERSION}
USE_GL= glut glew
-USE_GMAKE= yes
+USES= gmake
USE_PYTHON= yes
PLIST_SUB= PYMOL_VER=${VERSION} PYTHON_VER=${PYTHON_VER}
diff --git a/biology/velvet/Makefile b/biology/velvet/Makefile
index cd80954703fb..06f7344df390 100644
--- a/biology/velvet/Makefile
+++ b/biology/velvet/Makefile
@@ -11,14 +11,13 @@ EXTRACT_SUFX= .tgz
MAINTAINER= mzaki@m.u-tokyo.ac.jp
COMMENT= Sequence assembler for very short reads
-USE_GMAKE= yes
ALL_TARGET= default
MAXKMERLENGTH?= 31
VELVET_CATEGORIES?= 2
MAKE_ENV+= MAXKMERLENGTH=${MAXKMERLENGTH} CATEGORIES=${VELVET_CATEGORIES}
-USES= perl5
+USES= perl5 gmake
USE_PERL5= run
BINARIES= velvetg velveth
diff --git a/biology/xmolwt/Makefile b/biology/xmolwt/Makefile
index 45c2a6e599eb..9c206c4bb3ec 100644
--- a/biology/xmolwt/Makefile
+++ b/biology/xmolwt/Makefile
@@ -12,7 +12,7 @@ COMMENT= Calculate atom weight and percent of each element for a given formula
OPTIONS_DEFINE= DOCS GTK2
-USE_GMAKE= yes
+USES= gmake
MAKEFILE= Makefile.gtk
ALL_TARGET= gmolwt