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authorEmanuel Haupt <ehaupt@FreeBSD.org>2005-10-15 20:09:50 +0000
committerEmanuel Haupt <ehaupt@FreeBSD.org>2005-10-15 20:09:50 +0000
commit2cb934bb50938e9cecf714632e48b43bb1a083be (patch)
tree44dc22eb82e27d7b3f1b3b4d58bb633c256e411b
parentf1d38768100b17ff2380d8c1c3e36b91d9662dda (diff)
downloadports-2cb934bb50938e9cecf714632e48b43bb1a083be.tar.gz
ports-2cb934bb50938e9cecf714632e48b43bb1a083be.zip
Notes
-rw-r--r--biology/Makefile1
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/Makefile34
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/distinfo2
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/pkg-descr12
-rw-r--r--biology/p5-Bio-ASN1-EntrezGene/pkg-plist12
5 files changed, 61 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile
index 9488229aa980..c81dd0446941 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -43,6 +43,7 @@
SUBDIR += nclever
SUBDIR += ortep3
SUBDIR += p5-AcePerl
+ SUBDIR += p5-Bio-ASN1-EntrezGene
SUBDIR += p5-Bio-Das
SUBDIR += p5-bioperl
SUBDIR += paml
diff --git a/biology/p5-Bio-ASN1-EntrezGene/Makefile b/biology/p5-Bio-ASN1-EntrezGene/Makefile
new file mode 100644
index 000000000000..05378930aa0b
--- /dev/null
+++ b/biology/p5-Bio-ASN1-EntrezGene/Makefile
@@ -0,0 +1,34 @@
+# New ports collection makefile for: biology/p5-Bio-ASN1-EntrezGene
+# Date created: 12 October 2005
+# Whom: Mauricio Herrera Cuadra <mauricio@arareko.net>
+#
+# $FreeBSD$
+#
+
+PORTNAME= Bio-ASN1-EntrezGene
+PORTVERSION= 1.091
+CATEGORIES= biology perl5
+MASTER_SITES= ${MASTER_SITE_PERL_CPAN}
+MASTER_SITE_SUBDIR= Bio
+PKGNAMEPREFIX= p5-
+EXTRACT_SUFX= .tgz
+
+MAINTAINER= mauricio@arareko.net
+COMMENT= Regular expression-based Perl Parser for NCBI Entrez Gene
+
+WRKSRC= ${WRKDIR}/Bio-ASN1-EntrezGene-1.09
+
+PERL_CONFIGURE= yes
+
+MAN3= Bio::ASN1::EntrezGene.3 \
+ Bio::ASN1::EntrezGene::Indexer.3 \
+ Bio::ASN1::Sequence.3 \
+ Bio::ASN1::Sequence::Indexer.3
+
+.include <bsd.port.pre.mk>
+
+.if ${PERL_LEVEL} < 500600
+IGNORE= requires at least perl5.6 to build
+.endif
+
+.include <bsd.port.post.mk>
diff --git a/biology/p5-Bio-ASN1-EntrezGene/distinfo b/biology/p5-Bio-ASN1-EntrezGene/distinfo
new file mode 100644
index 000000000000..e7a08e192253
--- /dev/null
+++ b/biology/p5-Bio-ASN1-EntrezGene/distinfo
@@ -0,0 +1,2 @@
+MD5 (Bio-ASN1-EntrezGene-1.091.tgz) = fabb888e03435007e08050def1aed0ac
+SIZE (Bio-ASN1-EntrezGene-1.091.tgz) = 36360
diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg-descr b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr
new file mode 100644
index 000000000000..1e01411c8adb
--- /dev/null
+++ b/biology/p5-Bio-ASN1-EntrezGene/pkg-descr
@@ -0,0 +1,12 @@
+Bio::ASN1::EntrezGene is a regular expression-based Perl Parser for NCBI Entrez
+Gene genome databases (http://www.ncbi.nih.gov/entrez/query.fcgi?db=gene). It
+parses an ASN.1-formatted Entrez Gene record and returns a data structure that
+contains all data items from the gene record.
+
+The parser will report error & line number if input data does not conform to the
+NCBI Entrez Gene genome annotation file format.
+
+WWW: http://search.cpan.org/dist/Bio-ASN1-EntrezGene/
+
+- Mauricio
+mauricio@arareko.net
diff --git a/biology/p5-Bio-ASN1-EntrezGene/pkg-plist b/biology/p5-Bio-ASN1-EntrezGene/pkg-plist
new file mode 100644
index 000000000000..c69aaacde5d6
--- /dev/null
+++ b/biology/p5-Bio-ASN1-EntrezGene/pkg-plist
@@ -0,0 +1,12 @@
+%%SITE_PERL%%/Bio/ASN1/EntrezGene.pm
+%%SITE_PERL%%/Bio/ASN1/EntrezGene/Indexer.pm
+%%SITE_PERL%%/Bio/ASN1/Sequence.pm
+%%SITE_PERL%%/Bio/ASN1/Sequence/Indexer.pm
+%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1/EntrezGene/.packlist
+@dirrm %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1/EntrezGene
+@unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/ASN1 2>/dev/null || true
+@unexec rmdir %D/%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio 2>/dev/null || true
+@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1/EntrezGene 2>/dev/null || true
+@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1/Sequence 2>/dev/null || true
+@unexec rmdir %D/%%SITE_PERL%%/Bio/ASN1 2>/dev/null || true
+@unexec rmdir %D/%%SITE_PERL%%/Bio 2>/dev/null || true