Remove expired ports:

2018-06-06 biology/ssaha: Broken for more than 6 months
2018-06-06 biology/crux: Broken for more than 6 months
2018-06-06 biology/ariadne: Broken for more than 6 months
2018-06-06 cad/sceptre: Broken for more than 6 months
2018-06-06 cad/cider: Broken for more than 6 months
2018-06-06 chinese/scim-array: Broken for more than 6 months
2018-06-06 chinese/xpdf: Broken for more than 6 months
2018-06-06 chinese/telnet: Broken for more than 6 months
2018-06-06 comms/java-commapi-freebsd: Depends on BROKEN and expiring comms/java-commapi
2018-06-06 comms/soundmodem: Broken for more than 6 months
2018-06-06 comms/jsdr: Broken for more than 6 months
2018-06-06 comms/java-commapi: Broken for more than 6 months
2018-06-06 converters/pdf2djvu: Broken for more than 6 months
2018-06-06 databases/rdb: Broken for more than 6 months
2018-06-06 databases/animenfo-client: Broken for more than 6 months
2018-06-06 databases/ruby-mysql: Broken for more than 6 months
2018-06-06 databases/riak: Broken for more than 6 months
2018-06-06 databases/animenfo-client-gtk: Broken for more than 6 months
2018-06-06 databases/rdfdb: Broken for more than 6 months
2018-06-06 databases/riak2: Broken for more than 6 months
2018-06-06 devel/subversion-static: Broken for more than 6 months
2018-06-06 japanese/xgate: Broken for more than 6 months
2018-06-06 textproc/opengrm-ngram: Broken for more than 6 months
2018-06-06 textproc/ocaml-tyxml: Depends on BROKEN and expiring www/ocaml-net
2018-06-06 www/ocaml-net: Broken for more than 6 months
2018-06-06 audio/linux-genpuid: Broken for more than 6 months
2018-06-06 x11/enventor: Broken for more than 6 months
2018-06-06 audio/xmms-timidity: Broken for more than 6 months
2018-06-06 audio/kaudiocreator: Broken for more than 6 months
2018-06-06 audio/jxm: Depends on BROKEN and expiring comms/java-commapi
2018-06-06 audio/deforaos-mixer: Broken for more than 6 months
2018-06-06 audio/gkrellmss2: Broken for more than 6 months
2018-06-06 audio/ogg2mp3: Broken for more than 6 months
2018-06-06 audio/abcmidi: Broken for more than 6 months
2018-06-06 benchmarks/netpipe: Broken for more than 6 months
2018-06-06 biology/plink: Broken for more than 6 months

280 files changed, 36 insertions, 8863 deletions

diff --git a/LEGAL b/LEGAL
index 251f956ef28b..fed17e7ebcb8 100644
--- a/LEGAL
+++ b/LEGAL
@@ -116,7 +116,6 @@ ICON-Ximian-South-*	x11-themes/gnome-icons-ximian-south Themes may contain artwo
 jaf-*.zip		java/jaf		See the license
 jai-*-lib-linux-i586.*	java/jai		Redistribution is not permitted
 java3d-sdk-*-linux-i386* java/java3d		License does not allow distribution
-javax_comm-*-solsparc.*	comms/java-commapi	No commercial use
 jdk-8*-apidocs.zip	java/jdk8-doc		This documentation is under license and export control
 jdk-8*-i586.tar.gz	java/linux-oracle-jdk18	Redistribution of repackaged binaries not permitted
 jdk-9*-x64_bin.tar.gz	java/linux-oracle-jdk9	Redistribution of repackaged binaries not permitted
@@ -222,7 +221,6 @@ xanim-*			multimedia/xanim	Must be redistributed without fee
 xchada01.lzh		games/xchadance		Contains commercial character data
 xephem-*		astro/xephem		Personal use only
 XFrisk-*.tar.gz		games/xfrisk		Possible trademark infringement
-xGate/*			japanese/xgate		Requested by Orangesoft Inc.
 xhime*.tgz		games/xhime		Contains commercial character data
 xinvaders-*		games/xinvaders		Do not sell for profit
 xmdiary-*		deskutils/xmdiary	Do not sell for profit
diff --git a/MOVED b/MOVED
index 350e6e21b76c..f63695e908fd 100644
--- a/MOVED
+++ b/MOVED
@@ -10225,3 +10225,39 @@ net/frr|net/frr4|2018-06-02|Will introduce multiple versions of frr
 lang/perl5.22|lang/perl5.26|2018-06-02|Has expired: Support ends three years after .0 release, please upgrade to a more recent version of Perl
 lang/sdcc-devel|lang/sdcc|2018-06-06|No longer useful.
 net/py-pyldap|net/py-ldap|2018-06-06|Has expired: This code has merged back to python-ldap. Please use net/py-ldap instead
+biology/ssaha||2018-06-07|Has expired: Broken for more than 6 months
+biology/crux||2018-06-07|Has expired: Broken for more than 6 months
+biology/ariadne||2018-06-07|Has expired: Broken for more than 6 months
+cad/sceptre||2018-06-07|Has expired: Broken for more than 6 months
+cad/cider||2018-06-07|Has expired: Broken for more than 6 months
+chinese/scim-array||2018-06-07|Has expired: Broken for more than 6 months
+chinese/xpdf||2018-06-07|Has expired: Broken for more than 6 months
+chinese/telnet||2018-06-07|Has expired: Broken for more than 6 months
+comms/java-commapi-freebsd||2018-06-07|Has expired: Depends on BROKEN and expiring comms/java-commapi
+comms/soundmodem||2018-06-07|Has expired: Broken for more than 6 months
+comms/jsdr||2018-06-07|Has expired: Broken for more than 6 months
+comms/java-commapi||2018-06-07|Has expired: Broken for more than 6 months
+converters/pdf2djvu||2018-06-07|Has expired: Broken for more than 6 months
+databases/rdb||2018-06-07|Has expired: Broken for more than 6 months
+databases/animenfo-client||2018-06-07|Has expired: Broken for more than 6 months
+databases/ruby-mysql||2018-06-07|Has expired: Broken for more than 6 months
+databases/riak||2018-06-07|Has expired: Broken for more than 6 months
+databases/animenfo-client-gtk||2018-06-07|Has expired: Broken for more than 6 months
+databases/rdfdb||2018-06-07|Has expired: Broken for more than 6 months
+databases/riak2||2018-06-07|Has expired: Broken for more than 6 months
+devel/subversion-static||2018-06-07|Has expired: Broken for more than 6 months
+japanese/xgate||2018-06-07|Has expired: Broken for more than 6 months
+textproc/opengrm-ngram||2018-06-07|Has expired: Broken for more than 6 months
+textproc/ocaml-tyxml||2018-06-07|Has expired: Depends on BROKEN and expiring www/ocaml-net
+www/ocaml-net||2018-06-07|Has expired: Broken for more than 6 months
+audio/linux-genpuid||2018-06-07|Has expired: Broken for more than 6 months
+x11/enventor||2018-06-07|Has expired: Broken for more than 6 months
+audio/xmms-timidity||2018-06-07|Has expired: Broken for more than 6 months
+audio/kaudiocreator||2018-06-07|Has expired: Broken for more than 6 months
+audio/jxm||2018-06-07|Has expired: Depends on BROKEN and expiring comms/java-commapi
+audio/deforaos-mixer||2018-06-07|Has expired: Broken for more than 6 months
+audio/gkrellmss2||2018-06-07|Has expired: Broken for more than 6 months
+audio/ogg2mp3||2018-06-07|Has expired: Broken for more than 6 months
+audio/abcmidi||2018-06-07|Has expired: Broken for more than 6 months
+benchmarks/netpipe||2018-06-07|Has expired: Broken for more than 6 months
+biology/plink||2018-06-07|Has expired: Broken for more than 6 months
diff --git a/audio/Makefile b/audio/Makefile
index fa46b3dcfe9c..ac4f53f59e3b 100644
--- a/audio/Makefile
+++ b/audio/Makefile
@@ -9,7 +9,6 @@
     SUBDIR += aacgain
     SUBDIR += aacplusenc
     SUBDIR += abcde
-    SUBDIR += abcmidi
     SUBDIR += abcselect
     SUBDIR += abgate-lv2
     SUBDIR += abraca
@@ -112,7 +111,6 @@
     SUBDIR += deadbeef-vu-meter-plugin
     SUBDIR += deadbeef-waveform-seekbar-plugin
     SUBDIR += decibel-audio-player
-    SUBDIR += deforaos-mixer
     SUBDIR += dekagen
     SUBDIR += denemo
     SUBDIR += dir2ogg
@@ -207,7 +205,6 @@
     SUBDIR += ghostess
     SUBDIR += gimmix
     SUBDIR += gkrellmms2
-    SUBDIR += gkrellmss2
     SUBDIR += gkrellmvolume2
     SUBDIR += glame
     SUBDIR += glurp
@@ -365,8 +362,6 @@
     SUBDIR += juk-kde4
     SUBDIR += juke
     SUBDIR += julius
-    SUBDIR += jxm
-    SUBDIR += kaudiocreator
     SUBDIR += kexis
     SUBDIR += kid3-kde4
     SUBDIR += kid3-qt4
@@ -482,7 +477,6 @@
     SUBDIR += linux-c7-pulseaudio-libs
     SUBDIR += linux-c7-pulseaudio-utils
     SUBDIR += linux-c7-sdl_mixer
-    SUBDIR += linux-genpuid
     SUBDIR += linux-laudio
     SUBDIR += linux-skype_oss_wrapper
     SUBDIR += linuxsampler
@@ -584,7 +578,6 @@
     SUBDIR += nuvolaplayer
     SUBDIR += oaml
     SUBDIR += ocp
-    SUBDIR += ogg2mp3
     SUBDIR += openal
     SUBDIR += openal-soft
     SUBDIR += opencore-amr
@@ -903,7 +896,6 @@
     SUBDIR += xmms-scrobbler
     SUBDIR += xmms-sexypsf
     SUBDIR += xmms-shn
-    SUBDIR += xmms-timidity
     SUBDIR += xmms-volnorm
     SUBDIR += xmms-wavpack
     SUBDIR += xmms-xf86audio
diff --git a/audio/abcmidi/Makefile b/audio/abcmidi/Makefile
deleted file mode 100644
index 6816102bd543..000000000000
--- a/audio/abcmidi/Makefile
+++ /dev/null
@@ -1,47 +0,0 @@
-# Created by: Sue Blake <sue@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	abcmidi
-DISTVERSION=	2015-09-28
-CATEGORIES=	audio
-MASTER_SITES=	http://ifdo.pugmarks.com/~seymour/runabc/
-DISTNAME=	abcMIDI-${DISTVERSION:S/-/./g}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Convert abc music files to MIDI and PostScript
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-WRKSRC=		${WRKDIR}/${PORTNAME}
-
-USES=		zip
-GNU_CONFIGURE=	yes
-
-PORTDOCS=	*
-PLIST_FILES=	${EXECUTABLES:S,^,bin/,} \
-		${EXECUTABLES:S,^,man/man1/,:S,$,.1.gz,}
-
-OPTIONS_DEFINE=	DOCS
-
-EXECUTABLES=	abc2abc abc2midi abcmatch mftext midi2abc midicopy yaps
-
-post-patch:
-	@${REINPLACE_CMD} -e \
-		's| -O2||' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e \
-		'/^docdir/s|= .*|= $${datadir}/doc/abcmidi| ; \
-		 s|$${prefix}/||g ; \
-		 s|$$(INSTALL) -m 755|$$(INSTALL_PROGRAM)| ; \
-		 s|$$(INSTALL) -m 644|$$(INSTALL_DATA)|' \
-		${WRKSRC}/Makefile.in
-
-post-install-DOCS-on:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}/programming
-	(cd ${WRKSRC}/doc/programming && ${INSTALL_DATA} *.abc *.txt \
-		${STAGEDIR}${DOCSDIR}/programming)
-
-.include <bsd.port.mk>
diff --git a/audio/abcmidi/distinfo b/audio/abcmidi/distinfo
deleted file mode 100644
index fedb1c1a7d70..000000000000
--- a/audio/abcmidi/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (abcMIDI-2015.09.28.zip) = 620050abf34be3d0c1c2c40fa1287634b06480c1f292779fe0462deccb74aeae
-SIZE (abcMIDI-2015.09.28.zip) = 668116
diff --git a/audio/abcmidi/pkg-descr b/audio/abcmidi/pkg-descr
deleted file mode 100644
index d56c7339bdfa..000000000000
--- a/audio/abcmidi/pkg-descr
+++ /dev/null
@@ -1,19 +0,0 @@
-abcMIDI is James Allwright's collection of abc <-> MIDI
-conversion utilities, plus YAPS to convert abc files to
-PostScript for printing music scores.
-
-midi2abc - program to convert MIDI format files to abc notation.
-abc2midi  - converts abc file to MIDI file(s).
-abc2abc - a simple abc checker/re-formatter/transposer.
-mftext - gives a verbose description of what is in a MIDI file.
-yaps - an abc to PostScript converter.
-
-Also includes:
-abcguide.txt - how to write abc files for these programs
-demo.abc - a collection of sample abc tunes
-Check ${PREFIX}/share/doc/abcmidi/ for these and other docs.
-
-The abc format is plain text, but you might optionally install
-a MIDI player (timidity) and a PostScript viewer (gv with ghostscript).
-
-WWW: http://ifdo.pugmarks.com/~seymour/runabc/top.html
diff --git a/audio/abcmidi/pkg-message b/audio/abcmidi/pkg-message
deleted file mode 100644
index 06ac19310059..000000000000
--- a/audio/abcmidi/pkg-message
+++ /dev/null
@@ -1,6 +0,0 @@
-
-Documentation and demo file are installed to
- ${PREFIX}/share/doc/abcmidi/
-
-The abc format is plain text, but you might optionally install a
-MIDI player (timidity) and a PostScript viewer (gv with ghostscript).
diff --git a/audio/deforaos-mixer/Makefile b/audio/deforaos-mixer/Makefile
deleted file mode 100644
index 9a0da72ee873..000000000000
--- a/audio/deforaos-mixer/Makefile
+++ /dev/null
@@ -1,53 +0,0 @@
-# Created by: Olivier Cochard-Labbe <olivier@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	mixer
-PORTVERSION=	0.2.2
-CATEGORIES=	audio
-MASTER_SITES=	http://www.defora.org/os/download/download/4456/
-PKGNAMEPREFIX=	deforaos-
-DISTNAME=	Mixer-${PORTVERSION}
-
-MAINTAINER=	olivier@FreeBSD.org
-COMMENT=	DeforaOS desktop audio mixer
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	BSD2CLAUSE
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-LIB_DEPENDS=	libSystem.so:devel/deforaos-libsystem \
-		libDesktop.so:x11/deforaos-libdesktop \
-		libfontconfig.so:x11-fonts/fontconfig \
-		libfreetype.so:print/freetype2
-
-USES=		desktop-file-utils pkgconfig
-USE_GNOME=	gtk20 cairo gdkpixbuf2
-
-MAKE_ARGS+=	PREFIX=${PREFIX}
-MAKE_ENV+=	MANDIR=${STAGEDIR}${MANPREFIX}/man
-
-OPTIONS_DEFINE=	DOCS NLS
-OPTIONS_SUB=	yes
-NLS_USES=	gettext
-DOCS_BUILD_DEPENDS=	xsltproc:textproc/libxslt \
-	${LOCALBASE}/share/xsl/docbook/manpages/docbook.xsl:textproc/docbook-xsl
-
-post-patch-DOCS-off:
-	${REINPLACE_CMD} 's|data doc po|data po|' \
-		${WRKSRC}/Makefile
-
-post-patch-NLS-off:
-	${REINPLACE_CMD} 's|doc po src|doc src|' \
-		${WRKSRC}/Makefile
-
-post-patch:
-	${REINPLACE_CMD} -e 's|Exec=mixer|Exec=${LOCALBASE}/bin/mixer|g' \
-		${WRKSRC}/data/deforaos-mixer.desktop
-
-post-install:
-	${STRIP_CMD} ${STAGEDIR}${PREFIX}/bin/mixer
-
-.include <bsd.port.mk>
diff --git a/audio/deforaos-mixer/distinfo b/audio/deforaos-mixer/distinfo
deleted file mode 100644
index a7df700a86da..000000000000
--- a/audio/deforaos-mixer/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1484555039
-SHA256 (Mixer-0.2.2.tar.gz) = c324d4423b5aaca7886dcc346633c0c92af0496a08a497207c414c414b02df12
-SIZE (Mixer-0.2.2.tar.gz) = 21372
diff --git a/audio/deforaos-mixer/files/patch-Makefile b/audio/deforaos-mixer/files/patch-Makefile
deleted file mode 100644
index 0363cf923908..000000000000
--- a/audio/deforaos-mixer/files/patch-Makefile
+++ /dev/null
@@ -1,11 +0,0 @@
---- Makefile.orig	2017-01-16 13:02:55 UTC
-+++ Makefile
-@@ -89,8 +89,6 @@ install:
- 		if [ -n "$(OBJDIR)" ]; then \
- 		$(MAKE) OBJDIR="$(OBJDIR)$$i/" install; \
- 		else $(MAKE) install; fi) || exit; done
--	$(MKDIR) $(DESTDIR)$(PREFIX)/share/doc/Mixer
--	$(INSTALL) -m 0644 README.md $(DESTDIR)$(PREFIX)/share/doc/Mixer/README.md
- 
- uninstall:
- 	@for i in $(SUBDIRS); do (cd "$$i" && \
diff --git a/audio/deforaos-mixer/files/patch-doc_Makefile b/audio/deforaos-mixer/files/patch-doc_Makefile
deleted file mode 100644
index 86b187e14652..000000000000
--- a/audio/deforaos-mixer/files/patch-doc_Makefile
+++ /dev/null
@@ -1,26 +0,0 @@
---- doc/Makefile.orig	2017-01-16 00:02:08 UTC
-+++ doc/Makefile
-@@ -1,4 +1,4 @@
--TARGETS	= $(OBJDIR)mixer.1 $(OBJDIR)mixer.html
-+TARGETS	= $(OBJDIR)mixer.1
- OBJDIR	=
- PREFIX	= /usr/local
- DESTDIR	=
-@@ -19,17 +19,14 @@ $(OBJDIR)mixer.html: manual.css.xml mixe
- clean:
- 	$(RM) -- $(mixer.1_OBJS) $(mixer.html_OBJS)
- 	./docbook.sh -c -P "$(PREFIX)" -- "$(OBJDIR)mixer.1"
--	./docbook.sh -c -P "$(PREFIX)" -- "$(OBJDIR)mixer.html"
- 
- distclean: clean
- 	$(RM) -- $(TARGETS)
- 
- install: $(TARGETS)
- 	./docbook.sh -P "$(DESTDIR)$(PREFIX)" -i -- "$(OBJDIR)mixer.1"
--	./docbook.sh -P "$(DESTDIR)$(PREFIX)" -i -- "$(OBJDIR)mixer.html"
- 
- uninstall:
- 	./docbook.sh -P "$(DESTDIR)$(PREFIX)" -u -- "mixer.1"
--	./docbook.sh -P "$(DESTDIR)$(PREFIX)" -u -- "mixer.html"
- 
- .PHONY: all clean distclean install uninstall
diff --git a/audio/deforaos-mixer/pkg-descr b/audio/deforaos-mixer/pkg-descr
deleted file mode 100644
index f857d1003870..000000000000
--- a/audio/deforaos-mixer/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-DeforaOS desktop audio mixer
-
-WWW: http://www.defora.org/
diff --git a/audio/deforaos-mixer/pkg-plist b/audio/deforaos-mixer/pkg-plist
deleted file mode 100644
index 9a97204d0b31..000000000000
--- a/audio/deforaos-mixer/pkg-plist
+++ /dev/null
@@ -1,5 +0,0 @@
-bin/mixer
-share/applications/deforaos-mixer.desktop
-%%PORTDOCS%%man/man1/mixer.1.gz
-%%NLS%%share/locale/fr/LC_MESSAGES/Mixer.mo
-%%NLS%%share/locale/es/LC_MESSAGES/Mixer.mo
diff --git a/audio/gkrellmss2/Makefile b/audio/gkrellmss2/Makefile
deleted file mode 100644
index 3d892d016891..000000000000
--- a/audio/gkrellmss2/Makefile
+++ /dev/null
@@ -1,51 +0,0 @@
-# Created by: Lars Eggert <larse@isi.edu>
-# $FreeBSD$
-
-PORTNAME=	gkrellmss
-PORTVERSION=	2.7
-PORTREVISION=	5
-CATEGORIES=	audio
-MASTER_SITES=	http://members.dslextreme.com/users/billw/gkrellmss/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	GKrellM plugin with a VU meter showing left/right channel audio
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2+
-
-BUILD_DEPENDS=	${LOCALBASE}/include/gkrellm2/gkrellm.h:sysutils/gkrellm2
-LIB_DEPENDS=	libfftw3.so:math/fftw3
-RUN_DEPENDS=	gkrellm:sysutils/gkrellm2
-
-USES=		gettext gmake
-USE_XORG=	x11
-USE_GNOME=	esound gtk20
-MAKE_ENV=	LOCALEDIR="${PREFIX}/share/locale"
-
-PORTDOCS=	Changelog README Themes
-PLIST_FILES=	libexec/gkrellm2/plugins/gkrellmss.so \
-		share/locale/ru/LC_MESSAGES/gkrellm-gkrellmss.mo
-
-OPTIONS_DEFINE=	DOCS
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|= -O2|=|g ; \
-		 s|= gcc|+=|g' ${WRKSRC}/src/Makefile
-	@${REINPLACE_CMD} -e 's|PKG_LIBS|PKG_LIB|g ; \
-		 s|-lfftw3|-L${LOCALBASE}/lib &|g' ${WRKSRC}/src/configure
-
-do-install:
-	@${MKDIR} ${STAGEDIR}${PREFIX}/libexec/gkrellm2/plugins
-	${INSTALL_LIB} ${WRKSRC}/src/gkrellmss.so \
-		${STAGEDIR}${PREFIX}/libexec/gkrellm2/plugins/gkrellmss.so
-	${INSTALL_DATA} ${WRKSRC}/po/ru.mo \
-		${STAGEDIR}${PREFIX}/share/locale/ru/LC_MESSAGES/gkrellm-gkrellmss.mo
-
-do-install-DOCS-on:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${PORTDOCS:S|^|${WRKSRC}/|} ${STAGEDIR}${DOCSDIR}
-
-.include <bsd.port.mk>
diff --git a/audio/gkrellmss2/distinfo b/audio/gkrellmss2/distinfo
deleted file mode 100644
index 26075a490ad9..000000000000
--- a/audio/gkrellmss2/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (gkrellmss-2.7.tar.gz) = 2b32ae545232cc0953268b541570c5b7363ad3df49cd150c78c15dcefd1f24cb
-SIZE (gkrellmss-2.7.tar.gz) = 33467
diff --git a/audio/gkrellmss2/pkg-descr b/audio/gkrellmss2/pkg-descr
deleted file mode 100644
index 6f47fadc7320..000000000000
--- a/audio/gkrellmss2/pkg-descr
+++ /dev/null
@@ -1,16 +0,0 @@
-GKrellMSS displays a VU meter showing left and right channel audio levels
-and also has a chart that shows combined left and right audio channels as
-an oscilloscope trace.
-
-There are two buttons to the left of the VU Meter which select an oscope
-horizontal sweep speed ranging from 100 microseconds (usec) per division
-to 50 milliseconds (msec) per division.  There are 5 horizontal divisions,
-so a trace sweep time can range from 500 usec (1/2000 sec) to 250 msec
-(1/4 sec).  The oscope trace is triggered by a positive zero crossing of
-audio signal to give nice stable displays.
-
-There is also a sensitivity level adjustment for the VU Meter and oscope
-chart.  Use the mouse wheel to adjust, or left click and drag sensitivity
-krell.
-
-WWW: http://members.dslextreme.com/users/billw/gkrellmss/gkrellmss.html
diff --git a/audio/jxm/Makefile b/audio/jxm/Makefile
deleted file mode 100644
index b81d88f2c629..000000000000
--- a/audio/jxm/Makefile
+++ /dev/null
@@ -1,34 +0,0 @@
-# Created by: Nick Sayer <nsayer@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	jxm
-PORTVERSION=	1.4
-PORTREVISION=	2
-CATEGORIES=	audio java
-MASTER_SITES=	SF/javaxm/JAR%20file%20only/${PORTVERSION}
-EXTRACT_SUFX=	.jar
-EXTRACT_ONLY=
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	XMPCR (USB XM radio) control software
-
-DEPRECATED=	Depends on BROKEN and expiring comms/java-commapi
-EXPIRATION_DATE=	2018-06-06
-
-RUN_DEPENDS=	${JAVA_HOME}/jre/lib/ext/CommDriver.jar:comms/java-commapi-freebsd
-
-USE_JAVA=	yes
-JAVA_VERSION=	1.6+
-JAVA_OS=	native
-
-NO_BUILD=	yes
-NO_WRKSUBDIR=	yes
-
-SUB_FILES=	jxm.sh
-PLIST_FILES=	%%JAVAJARDIR%%/jxm.jar bin/jxm
-
-do-install:
-	@${INSTALL_DATA} ${DISTDIR}/${DISTFILES} ${STAGEDIR}${JAVAJARDIR}/jxm.jar
-	@${INSTALL_SCRIPT} ${WRKDIR}/jxm.sh ${STAGEDIR}${PREFIX}/bin/jxm
-
-.include <bsd.port.mk>
diff --git a/audio/jxm/distinfo b/audio/jxm/distinfo
deleted file mode 100644
index ce46b97ce464..000000000000
--- a/audio/jxm/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (jxm-1.4.jar) = 9d93ea7af098f17c1e6bf5bbce9b9596440943b42fe0c6cb364b7e106acd8c80
-SIZE (jxm-1.4.jar) = 763432
diff --git a/audio/jxm/files/jxm.sh.in b/audio/jxm/files/jxm.sh.in
deleted file mode 100644
index 6a88cdc34772..000000000000
--- a/audio/jxm/files/jxm.sh.in
+++ /dev/null
@@ -1,5 +0,0 @@
-#! /bin/sh
-#
-# $FreeBSD$
-
-JAVA_VERSION="%%JAVA_VERSION%%" JAVA_OS="native" "%%LOCALBASE%%/bin/java" -jar "%%JAVAJARDIR%%/jxm.jar" "$@"
diff --git a/audio/jxm/pkg-descr b/audio/jxm/pkg-descr
deleted file mode 100644
index b9cc8c31a1a1..000000000000
--- a/audio/jxm/pkg-descr
+++ /dev/null
@@ -1,16 +0,0 @@
-JXM is a pure-java (SWING) GUI for controlling the XMPCR, which is a USB
-powered and controlled XM radio.
-
-Features:
-  * Fuzzy logic search
-  * Song time remaining
-  * Channel filtering
-  * Memory
-  * Integration with XM's web site
-  * Integration with Google
-  * Integration with iTunes Music Store (where possible)
-  * XM Tracker protocol client
-  * Song rating protocol client
-  * "Smart" mute
-
-WWW: http://javaxm.sourceforge.net/
diff --git a/audio/kaudiocreator/Makefile b/audio/kaudiocreator/Makefile
deleted file mode 100644
index fc9fb5ce4b01..000000000000
--- a/audio/kaudiocreator/Makefile
+++ /dev/null
@@ -1,41 +0,0 @@
-# Created by: David Naylor <naylor.b.david@gmail.com>
-# $FreeBSD$
-
-PORTNAME=	kaudiocreator
-PORTVERSION=	1.3
-PORTREVISION=	6
-CATEGORIES=	audio kde
-MASTER_SITES=	http://kde-look.org/CONTENT/content-files/
-DISTNAME=	107645-${PORTNAME}-${PORTVERSION}
-
-MAINTAINER=	dbn@FreeBSD.org
-COMMENT=	Audio-cd ripper and encoder for KDE4
-
-LICENSE=	GPLv2
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LIB_DEPENDS=	libdiscid.so:audio/libdiscid \
-		libtag.so:audio/taglib
-RUN_DEPENDS=	flac:audio/flac \
-		oggenc:audio/vorbis-tools
-.if !defined(PACKAGE_BUILDING)
-RUN_DEPENDS+=	lame:audio/lame
-.endif
-
-USES=		cmake kde:4 tar:bzip2
-USE_QT4=	moc_build qmake_build rcc_build uic_build
-USE_KDE=	automoc4 libkcddb libkcompactdisc
-
-WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}
-
-OPTIONS_DEFINE=	NLS
-OPTIONS_SUB=	yes
-NLS_USES=	gettext
-
-post-patch-NLS-off:
-	${REINPLACE_CMD} 's,add_subdirectory(po),,' ${WRKSRC}/CMakeLists.txt
-
-.include <bsd.port.mk>
diff --git a/audio/kaudiocreator/distinfo b/audio/kaudiocreator/distinfo
deleted file mode 100644
index 203987be346f..000000000000
--- a/audio/kaudiocreator/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (107645-kaudiocreator-1.3.tar.bz2) = f0f13bea35ef5faf3fa3443701c0671f0fc89b5d3478fe286b32435df598ed70
-SIZE (107645-kaudiocreator-1.3.tar.bz2) = 310937
diff --git a/audio/kaudiocreator/pkg-descr b/audio/kaudiocreator/pkg-descr
deleted file mode 100644
index 426ed3dabe83..000000000000
--- a/audio/kaudiocreator/pkg-descr
+++ /dev/null
@@ -1,10 +0,0 @@
-KAudioCreator is an audio CD ripper, which uses cdparanoia as a
-backend to extract the tracks and later it encodes them to mp3 or
-ogg files (or many other formats supported).
-
-Features:
- - CDDB lookup to extract the album and track information
- - Different encoding formats supported (ogg, mp3, flac)
- - Different filename formats using tags
-
-WWW: http://www.kde.org/applications/multimedia/kaudiocreator/
diff --git a/audio/kaudiocreator/pkg-plist b/audio/kaudiocreator/pkg-plist
deleted file mode 100644
index b0af6f341a41..000000000000
--- a/audio/kaudiocreator/pkg-plist
+++ /dev/null
@@ -1,78 +0,0 @@
-bin/kaudiocreator
-share/applications/kde4/kaudiocreator.desktop
-share/apps/kaudiocreator/kaudiocreator.notifyrc
-share/apps/kaudiocreator/kaudiocreatorui.rc
-share/apps/kconf_update/kaudiocreator-libkcddb.upd
-share/apps/kconf_update/kaudiocreator-meta.upd
-share/apps/kconf_update/upgrade-kaudiocreator-metadata.sh
-share/config.kcfg/kaudiocreator.kcfg
-share/config.kcfg/kaudiocreator_encoders.kcfg
-share/icons/hicolor/16x16/apps/kaudiocreator.png
-share/icons/hicolor/32x32/apps/kaudiocreator.png
-share/kde4/services/ServiceMenus/audiocd_extract.desktop
-%%NLS%%share/locale/af/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ar/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/be/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/bg/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/br/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/bs/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ca/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ca@valencia/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/cs/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/cy/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/da/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/de/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/el/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/en_GB/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/eo/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/es/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/et/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/eu/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/fa/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/fi/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/fr/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ga/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/gl/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/hi/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/hne/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/hr/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/is/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/it/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ja/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/kk/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/km/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/lt/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/lv/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/mai/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/mk/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ms/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/nb/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/nds/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ne/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/nl/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/nn/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/oc/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/pa/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/pl/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/pt/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/pt_BR/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ro/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ru/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/se/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sk/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sl/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sr/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sr@ijekavian/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sr@ijekavianlatin/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sr@latin/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/sv/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ta/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/tg/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/th/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/tr/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/ug/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/uk/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/xh/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/zh_CN/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/zh_HK/LC_MESSAGES/kaudiocreator.mo
-%%NLS%%share/locale/zh_TW/LC_MESSAGES/kaudiocreator.mo
diff --git a/audio/linux-genpuid/Makefile b/audio/linux-genpuid/Makefile
deleted file mode 100644
index 541d578daf36..000000000000
--- a/audio/linux-genpuid/Makefile
+++ /dev/null
@@ -1,31 +0,0 @@
-# Created by: Christopher Key <cjk32@cam.ac.uk>
-# $FreeBSD$
-
-PORTNAME=	genpuid
-PORTVERSION=	1.4
-CATEGORIES=	audio linux
-MASTER_SITES=	http://www.spicefly.com/files/
-PKGNAMEPREFIX=	linux-
-DISTNAME=	${PORTNAME}_linux_${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Application for generating MusicIP puids
-
-USES=		linux tar:tgz
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-NO_BUILD=		yes
-IA32_BINARY_PORT=	yes
-
-PLIST_FILES=	bin/genpuid bin/mipcore libexec/mipcore
-
-do-install:
-	${BRANDELF} -t Linux ${WRKDIR}/${PORTNAME}-${PORTVERSION}/genpuid
-	${BRANDELF} -t Linux ${WRKDIR}/${PORTNAME}-${PORTVERSION}/mipcore
-	${INSTALL_PROGRAM} ${WRKDIR}/${PORTNAME}-${PORTVERSION}/genpuid ${STAGEDIR}${PREFIX}/bin
-	${INSTALL_PROGRAM} ${WRKDIR}/${PORTNAME}-${PORTVERSION}/mipcore ${STAGEDIR}${PREFIX}/libexec
-	${LN} -fhs ${PREFIX}/libexec/mipcore ${STAGEDIR}${PREFIX}/bin/mipcore
-
-.include <bsd.port.mk>
diff --git a/audio/linux-genpuid/distinfo b/audio/linux-genpuid/distinfo
deleted file mode 100644
index 2e5dc45d33f0..000000000000
--- a/audio/linux-genpuid/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (genpuid_linux_1.4.tgz) = 906a4085dd508e5b29d5b7cb3d60087a44496490fd3374232a17c8f62a88b499
-SIZE (genpuid_linux_1.4.tgz) = 4453312
diff --git a/audio/linux-genpuid/pkg-descr b/audio/linux-genpuid/pkg-descr
deleted file mode 100644
index 2ec61abed856..000000000000
--- a/audio/linux-genpuid/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-This is an application for generating MusicIP puids.
-
-WWW: http://www.musicip.com/
diff --git a/audio/ogg2mp3/Makefile b/audio/ogg2mp3/Makefile
deleted file mode 100644
index 0cdfa3578c10..000000000000
--- a/audio/ogg2mp3/Makefile
+++ /dev/null
@@ -1,34 +0,0 @@
-# Created by: Aleksander Fafula <alex@bsdguru.org>
-# $FreeBSD$
-
-PORTNAME=	ogg2mp3
-PORTVERSION=	0.6.1
-PORTREVISION?=	2
-CATEGORIES=	audio
-MASTER_SITES=	http://atarininja.org/distfiles/
-
-MAINTAINER=	tobias.rehbein@web.de
-COMMENT=	Perl script that converts Ogg Vorbis files to MP3 format
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-RUN_DEPENDS=	lame:audio/lame \
-		p5-String-ShellQuote>=0:textproc/p5-String-ShellQuote \
-		ogginfo:audio/vorbis-tools
-
-NO_BUILD=	yes
-USES=		perl5 tar:bzip2
-
-PLIST_FILES=	bin/ogg2mp3
-
-post-patch:
-	@${REINPLACE_CMD} -e "s|%%LOCALBASE%%|${LOCALBASE}|" ${WRKSRC}/ogg2mp3
-
-do-install:
-	${INSTALL_SCRIPT} ${WRKSRC}/ogg2mp3 ${STAGEDIR}${PREFIX}/bin
-
-.include <bsd.port.mk>
diff --git a/audio/ogg2mp3/distinfo b/audio/ogg2mp3/distinfo
deleted file mode 100644
index a5f494c37efe..000000000000
--- a/audio/ogg2mp3/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (ogg2mp3-0.6.1.tar.bz2) = 4f6ffeed81a36bf1b6715ce0213a57fa3e7e1f40f80f382e663060645400d84e
-SIZE (ogg2mp3-0.6.1.tar.bz2) = 12424
diff --git a/audio/ogg2mp3/files/patch-ogg2mp3 b/audio/ogg2mp3/files/patch-ogg2mp3
deleted file mode 100644
index d866f0d9a0c3..000000000000
--- a/audio/ogg2mp3/files/patch-ogg2mp3
+++ /dev/null
@@ -1,23 +0,0 @@
---- ogg2mp3.orig	2009-08-28 00:49:03 UTC
-+++ ogg2mp3
-@@ -1,4 +1,4 @@
--#!/usr/bin/perl
-+#!%%LOCALBASE%%/bin/perl
- 
- # ogg2mp3
- # Maintained by: James Ausmus <james.ausmus.code@gmail.com>
-@@ -50,10 +50,10 @@ print "    Maintainership assumed by Jam
- print "  This code is released under the General Public License v2.\n";
- print " ------------------------------------------------------------------- \n\n";
- 
--my $MP3ENC  = "/usr/bin/lame";
--#my $MP3INFO = "/usr/bin/mp3_check";
--my $OGGINFO = "/usr/bin/ogginfo";
--my $OGG123  = "/usr/bin/ogg123";
-+my $MP3ENC  = "%%LOCALBASE%%/bin/lame";
-+#my $MP3INFO = "%%LOCALBASE%%/bin/mp3_check";
-+my $OGGINFO = "%%LOCALBASE%%/bin/ogginfo";
-+my $OGG123  = "%%LOCALBASE%%/bin/ogg123";
- 
- # check presence of executables
- stat($MP3ENC) or die "Error: $MP3ENC not present!\n";
diff --git a/audio/ogg2mp3/pkg-descr b/audio/ogg2mp3/pkg-descr
deleted file mode 100644
index 448054110e6f..000000000000
--- a/audio/ogg2mp3/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-ogg2mp3 is a perl script that converts Ogg Vorbis files into MP3 format.
-
-WWW: http://gitorious.org/ogg2mp3/pages/Home
diff --git a/audio/xmms-timidity/Makefile b/audio/xmms-timidity/Makefile
deleted file mode 100644
index 8dca50a47da7..000000000000
--- a/audio/xmms-timidity/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# Created by: Timothy Beyer <beyert@cs.ucr.edu>
-# $FreeBSD$
-
-PORTNAME=	xmms-timidity
-PORTVERSION=	0.0.3
-PORTREVISION=	2
-CATEGORIES=	audio
-MASTER_SITES=	http://www.shikadi.net/utils/files/
-
-MAINTAINER=	beyert@cs.ucr.edu
-COMMENT=	XMMS input plugin to play midi files (via timidity)
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LIB_DEPENDS=	libxmms.so:multimedia/xmms
-RUN_DEPENDS=	timidity:audio/timidity
-
-USE_LDCONFIG=	${PREFIX}/lib/xmms/Input
-
-USES=		tar:bzip2
-USE_GNOME=	gtk12
-CXXFLAGS+=	-I${LOCALBASE}/include `glib-config --cflags` -g -fPIC
-
-FILES=	xmms-timidity.cpp
-PLIST_FILES=	lib/xmms/Input/libxmms-timidity.so
-
-do-build:
-	cd ${WRKSRC} && ${CXX} ${CXXFLAGS} ${FILES} -o libxmms-timidity.so \
-		-shared -pthread
-
-do-install:
-	${MKDIR} ${STAGEDIR}${PREFIX}/lib/xmms/Input
-	${INSTALL_DATA} ${WRKSRC}/libxmms-timidity.so \
-	    ${STAGEDIR}${PREFIX}/lib/xmms/Input/libxmms-timidity.so
-
-.include <bsd.port.mk>
diff --git a/audio/xmms-timidity/distinfo b/audio/xmms-timidity/distinfo
deleted file mode 100644
index 8585300ce654..000000000000
--- a/audio/xmms-timidity/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (xmms-timidity-0.0.3.tar.bz2) = c0d37250beb9874a4fde3f0cecb543eeb6ce9ac319119315bf23a9f1b4344b19
-SIZE (xmms-timidity-0.0.3.tar.bz2) = 47755
diff --git a/audio/xmms-timidity/files/patch-xmms-timidity.cpp b/audio/xmms-timidity/files/patch-xmms-timidity.cpp
deleted file mode 100644
index 3b7ed2edcd9c..000000000000
--- a/audio/xmms-timidity/files/patch-xmms-timidity.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- xmms-timidity.cpp.orig	2005-07-21 09:44:56 UTC
-+++ xmms-timidity.cpp
-@@ -347,7 +347,7 @@ void setSongTitle(void)
- 
- void *infoThread(void *pData)
- {
--	int pipeTimidity = (int)pData;
-+	long pipeTimidity = (long)pData;
- 	char cLine[256];
- 	signed int iBytes = 1;
- 	while ((iBytes > 0) && (::bPlaying)) {
diff --git a/audio/xmms-timidity/pkg-descr b/audio/xmms-timidity/pkg-descr
deleted file mode 100644
index f0acb796828e..000000000000
--- a/audio/xmms-timidity/pkg-descr
+++ /dev/null
@@ -1,2 +0,0 @@
-xmms-timidity is another simple plugin that handles .mid files by running the
-locally installed copy of Timidity, and piping the output back to XMMS.
diff --git a/benchmarks/Makefile b/benchmarks/Makefile
index f3764e8873a4..84f606ad8162 100644
--- a/benchmarks/Makefile
+++ b/benchmarks/Makefile
@@ -44,7 +44,6 @@
     SUBDIR += netio
     SUBDIR += netperf
     SUBDIR += netperfmeter
-    SUBDIR += netpipe
     SUBDIR += nosqlbench
     SUBDIR += nqueens
     SUBDIR += nttcp
diff --git a/benchmarks/netpipe/Makefile b/benchmarks/netpipe/Makefile
deleted file mode 100644
index ab6572649f57..000000000000
--- a/benchmarks/netpipe/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# Created by: jkoshy
-# $FreeBSD$
-
-PORTNAME=	NetPIPE
-PORTVERSION=	3.7.2
-CATEGORIES=	benchmarks net
-MASTER_SITES=	http://bitspjoule.org/netpipe/code/
-
-MAINTAINER=	skreuzer@FreeBSD.org
-COMMENT=	Self-scaling network benchmark
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-# The default port builds and installs only the TCP version of
-# netpipe(1).  The sources support many other variants.
-
-PORTDOCS=	README netpipe_paper.ps
-PLIST_FILES=	bin/NPtcp bin/NPtcp6 man/man1/netpipe.1.gz
-
-DOCSDIR=	${PREFIX}/share/doc/${PORTNAME:tl}
-
-do-build:
-	cd ${WRKSRC} \
-		&& ${CC} ${CFLAGS} src/netpipe.c src/tcp.c -DTCP -o NPtcp \
-		&& ${CC} ${CFLAGS} src/netpipe.c src/tcp6.c -DTCP6 -o NPtcp6
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/NPtcp ${STAGEDIR}${PREFIX}/bin/NPtcp
-	${INSTALL_PROGRAM} ${WRKSRC}/NPtcp6 ${STAGEDIR}${PREFIX}/bin/NPtcp6
-	${INSTALL_MAN} ${WRKSRC}/dox/netpipe.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
-.for doc in ${PORTDOCS}
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/dox/${doc} ${STAGEDIR}${DOCSDIR}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/benchmarks/netpipe/distinfo b/benchmarks/netpipe/distinfo
deleted file mode 100644
index f6e00ab73153..000000000000
--- a/benchmarks/netpipe/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (NetPIPE-3.7.2.tar.gz) = 13dac884ff52951636f651c421f5ff4a853218a95aa28a4a852402ee385a2ab8
-SIZE (NetPIPE-3.7.2.tar.gz) = 400248
diff --git a/benchmarks/netpipe/files/patch-dox_netpipe.1 b/benchmarks/netpipe/files/patch-dox_netpipe.1
deleted file mode 100644
index 6040a5ea55b9..000000000000
--- a/benchmarks/netpipe/files/patch-dox_netpipe.1
+++ /dev/null
@@ -1,46 +0,0 @@
---- dox/netpipe.1.orig	2010-08-19 20:34:26 UTC
-+++ dox/netpipe.1
-@@ -26,7 +26,7 @@ NetPIPE \- 
- .IB E valuator
- 
- .SH SYNOPSIS
--.B NPtcp
-+.B "NPtcp|NPtcp6"
- [\c
- .BI \-h \ receiver_hostname\fR\c
- ]
-@@ -124,9 +124,9 @@ by using the existing modules as example
- 
- 
- 
--.SH TESTING TCP
-+.SH TESTING TCP/TCP6
- .PP
--NPtcp can now be launched in two ways, by manually starting NPtcp on
-+NPtcp can now be launched in two ways, by manually starting NPtcp or NPtcp6 on
- both systems or by using a nplaunch script.  To manually start NPtcp,
- the NetPIPE receiver must be 
- started first on the remote system using the command:
-@@ -147,7 +147,9 @@ NPtcp \-h 
- Any options used must be the same on both sides.  The \-P parameter
- can be used to override the default port number.  This is helpful when
- running several streams through a router to a single endpoint.
--
-+.PP
-+The NPtcp6 program is launched in a similar manner.
-+.PP
- The nplaunch script uses ssh to launch the remote receiver
- before starting the local transmitter.  To use rsh, simply change
- the nplaunch script.
-@@ -376,6 +378,11 @@ off using
- .ne 3
- 
- .TP
-+.BI \-P \ \fIport\fR
-+Set the port number used by the TCP and TCP6 tests to \fIport\fR.
-+.ne 3
-+
-+.TP
- .B \-r
- This option resets the TCP sockets after every test (TCP module only).
- It is necessary for some streaming tests to get good measurements
diff --git a/benchmarks/netpipe/pkg-descr b/benchmarks/netpipe/pkg-descr
deleted file mode 100644
index f843c8fb3013..000000000000
--- a/benchmarks/netpipe/pkg-descr
+++ /dev/null
@@ -1,18 +0,0 @@
-NetPIPE is a protocol independent performance tool that encapsulates
-the best of ttcp and netperf and visually represents the network
-performance under a variety of conditions. By taking the end-to-end
-application view of a network, NetPIPE clearly shows the overhead
-associated with different protocol layers. Netpipe answers such
-questions as: how soon will a given data block of size k arrive at its
-destination? Which network and protocol will transmit size k blocks
-the fastest? What is a given network's effective maximum throughput
-and saturation level?  Does there exist a block size k for which the
-throughput is maximized? How much communication overhead is due to the
-network communication protocol layer(s)? How quickly will a small (< 1
-kbyte) control message arrive, and which network and protocol are best
-for this purpose?
-
-For a paper fully describing NetPIPE and sample investigation of
-network performance issues using NetPIPE, see the homepage.
-
-WWW: http://bitspjoule.org/netpipe/
diff --git a/biology/Makefile b/biology/Makefile
index 6484d87ac4c9..f1252060e8b9 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -3,7 +3,6 @@
 
     COMMENT = Biology
 
-    SUBDIR += ariadne
     SUBDIR += artemis
     SUBDIR += avida
     SUBDIR += babel
@@ -23,7 +22,6 @@
     SUBDIR += clustalw
     SUBDIR += clustalx
     SUBDIR += consed
-    SUBDIR += crux
     SUBDIR += ddocent
     SUBDIR += diamond
     SUBDIR += emboss
@@ -93,7 +91,6 @@
     SUBDIR += phred
     SUBDIR += phylip
     SUBDIR += phyml
-    SUBDIR += plink
     SUBDIR += plinkseq
     SUBDIR += primer3
     SUBDIR += protomol
@@ -122,7 +119,6 @@
     SUBDIR += sim4
     SUBDIR += slclust
     SUBDIR += smithwaterman
-    SUBDIR += ssaha
     SUBDIR += stacks
     SUBDIR += tRNAscan-SE
     SUBDIR += t_coffee
diff --git a/biology/ariadne/Makefile b/biology/ariadne/Makefile
deleted file mode 100644
index 3ce04c057ed9..000000000000
--- a/biology/ariadne/Makefile
+++ /dev/null
@@ -1,38 +0,0 @@
-# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
-# $FreeBSD$
-
-PORTNAME=	ariadne
-PORTVERSION=	1.3
-CATEGORIES=	biology
-MASTER_SITES=	http://www.well.ox.ac.uk/ariadne/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Programs to compare protein sequences and profiles
-
-WRKSRC=		${WRKDIR}/SRC-${PORTVERSION}
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-PLIST_FILES+=	bin/ariadne bin/prospero
-USES=		gmake tar:Z
-PORTDOCS=	README
-MAKE_ARGS+=	CC="${CC}"
-
-OPTIONS_DEFINE=	DOCS
-
-MAKE_JOBS_UNSAFE=	yes
-
-post-patch:
-	@${REINPLACE_CMD} -e 's|CFLAGS =|CFLAGS +=| ; \
-		s|-c $$(OPTIMISE)|-c ${CFLAGS} ${OPTIMIZE}|g' \
-		${WRKSRC}/Makefile
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/${OPSYS}/ariadne ${STAGEDIR}${PREFIX}/bin
-	${INSTALL_PROGRAM} ${WRKSRC}/${OPSYS}/prospero ${STAGEDIR}${PREFIX}/bin
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/README ${STAGEDIR}${DOCSDIR}
-
-.include <bsd.port.mk>
diff --git a/biology/ariadne/distinfo b/biology/ariadne/distinfo
deleted file mode 100644
index f68ade35372a..000000000000
--- a/biology/ariadne/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (ariadne-1.3.tar.Z) = 8b6b0acb6e8d02b1303d94b20906bf2bf1dee3de4eceeb1b927cfba7a96fd00d
-SIZE (ariadne-1.3.tar.Z) = 69427
diff --git a/biology/ariadne/pkg-descr b/biology/ariadne/pkg-descr
deleted file mode 100644
index e7566af34e4d..000000000000
--- a/biology/ariadne/pkg-descr
+++ /dev/null
@@ -1,18 +0,0 @@
-ARIADNE is a package of two programs, ariadne and prospero, that compare
-protein sequences and profiles using the Smith-Waterman algorithm, and
-assesses statistical significance using a new accurate formula,
-described in Mott, 2000, "Accurate Formula for P-values of gapped local
-sequence and profile alignments" J. Mol Biol. 300:649-659.
-
-The sequence/profile comparison algorithms used in ARIADNE are standard,
-and are probably not the fastest implementations available. The novel
-part is the method for determining statistical significance, which will
-give thresholds of significance that are accurate to within 5% 95% of
-the time.
-
-The package is written in ANSI C. You are free to incorporate the method
-used for assessing statistical significance into third-party code,
-provided you cite the above reference. The routines for assessing
-significance are all in gaplib.c
-
-WWW: http://www.well.ox.ac.uk/ariadne/
diff --git a/biology/crux/Makefile b/biology/crux/Makefile
deleted file mode 100644
index 339ee827f79c..000000000000
--- a/biology/crux/Makefile
+++ /dev/null
@@ -1,56 +0,0 @@
-# Created by: Jason Evans <jasone@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	crux
-PORTVERSION=	1.2.0
-PORTREVISION=	9
-CATEGORIES=	biology python
-MASTER_SITES=	http://www.canonware.com/download/Crux/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Software toolkit for phylogenetic inference
-
-LICENSE=	BSD2CLAUSE BSD3CLAUSE
-LICENSE_COMB=	multi
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-BROKEN_aarch64=		Fails to link: ImportError: /lib/libgcc_s.so.1: version GCC_4.5.0 required by /usr/local/lib/gcc5/libgfortran.so.3 not found
-BROKEN_armv6=		Fails to link: ImportError: /usr/local/lib/gcc49/libgfortran.so.3: Undefined symbol "__aeabi_ldivmod"
-BROKEN_armv7=		Fails to link: ImportError: /usr/local/lib/gcc49/libgfortran.so.3: Undefined symbol "__aeabi_ldivmod"
-
-USES=		fortran gmake python tar:bzip2
-USE_CSTD=	gnu99
-GNU_CONFIGURE=	yes
-CONFIGURE_ARGS=	--datadir=${PREFIX}/lib \
-		--with-python=${PYTHON_CMD} \
-		--disable-mpi
-
-CPPFLAGS+=	-I${LOCALBASE}/include
-LDFLAGS+=	-L${LOCALBASE}/lib
-
-MAKE_JOBS_UNSAFE=	yes
-
-OPTIONS_DEFINE=		SYS_LINALG
-
-SYS_LINALG_DESC=	Enable system ATLAS/LAPACK
-SYS_LINALG_LIB_DEPENDS=	libatlas.so:math/atlas
-SYS_LINALG_CONFIGURE_ENABLE=	sys-linalg
-
-post-patch:
-	@${REINPLACE_CMD} -e '/altivec/s|-f|-m|' ${WRKSRC}/configure
-	@${REINPLACE_CMD} -e \
-		's|\([[:blank:]]\)\($$(BINDIR)\)|\1$$(DESTDIR)\2| ; \
-		 s|\([[:blank:]]\)\($$(DATADIR)\)|\1$$(DESTDIR)\2| ; \
-		 s|\(,\)\(@site_packages@\)|\1$$(DESTDIR)\2| ; \
-		 s|\([[:blank:]]\)\(@site_packages@\)|\1$$(DESTDIR)\2|' \
-		${WRKSRC}/Makefile.in
-
-post-install:
-	@(${FIND} ${STAGEDIR}${PREFIX}/lib/Crux/lib -maxdepth 1 -type f \
-		-name "*.so" | ${XARGS} ${STRIP_CMD})
-	@(${FIND} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR} -maxdepth 3 -type f \
-		-name "*.so" | ${XARGS} ${STRIP_CMD})
-
-.include <bsd.port.mk>
diff --git a/biology/crux/distinfo b/biology/crux/distinfo
deleted file mode 100644
index 7a42e305350a..000000000000
--- a/biology/crux/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (crux-1.2.0.tar.bz2) = 11f677e8bf62db69e75271670ea50fb5a23c8a2c526fa9d16ccf2e736e5212c5
-SIZE (crux-1.2.0.tar.bz2) = 1187274
diff --git a/biology/crux/files/patch-lib_Crux_CxPpc.c b/biology/crux/files/patch-lib_Crux_CxPpc.c
deleted file mode 100644
index ea100b5c9928..000000000000
--- a/biology/crux/files/patch-lib_Crux_CxPpc.c
+++ /dev/null
@@ -1,18 +0,0 @@
---- lib/Crux/CxPpc.c.orig	2009-09-19 04:31:04 UTC
-+++ lib/Crux/CxPpc.c
-@@ -8,14 +8,11 @@ bool CxgPpcUseAltivec;
- void
- CxPpcCpuInit(void)
- {
--    int mib[2];
-     int result, error;
-     size_t len;
- 
--    mib[0] = CTL_HW;
--    mib[1] = HW_VECTORUNIT;
-     len = sizeof(result);
--    error = sysctl(mib, 2, &result, &len, NULL, 0);
-+    error = sysctlbyname("hw.altivec", &result, &len, NULL, 0);
-     if (error != 0)
-     {
- 	CxgPpcUseAltivec = false;
diff --git a/biology/crux/files/pkg-install b/biology/crux/files/pkg-install
deleted file mode 100644
index c2e494752edd..000000000000
--- a/biology/crux/files/pkg-install
+++ /dev/null
@@ -1,8 +0,0 @@
-#!/bin/sh
-
-case $2 in
-POST-INSTALL)
-	${PKG_PREFIX}/bin/crux -b -q /dev/null
-	exit 0
-	;;
-esac
diff --git a/biology/crux/pkg-descr b/biology/crux/pkg-descr
deleted file mode 100644
index 5a27474d58b3..000000000000
--- a/biology/crux/pkg-descr
+++ /dev/null
@@ -1,19 +0,0 @@
-Crux is a software toolkit for molecular phylogenetic inference. It is
-structured as a set of Python modules, which makes it possible to quickly
-develop Python scripts that perform unique, non-canned analyses. Features
-include:
-* Tree log-likelihoods can be computed under a variety of models,
-  including all specializations of GTR+I+G and mixture models. Tree
-  likelihoods can be computed in parallel via pthreads.
-* Bayesian Markov chain Monte Carlo (MCMC) methods (with Metropolis
-  coupling) can sample among non-nested models using reversible model
-  jumps.
-* Crux is capable of simulating character data under any model its
-  likelihood engine is capable of.
-* The neighbor joining (NJ) and relaxed neighbor joining (RNJ)
-  implementations are among the fastest in existence.
-* Pairwise distances between sequences can be computed based on percent
-  identity, or using methods that correct for multiple hits
-  (Jukes-Cantor, Kimura, and logDet).
-
-WWW: http://www.canonware.com/Crux/
diff --git a/biology/crux/pkg-plist b/biology/crux/pkg-plist
deleted file mode 100644
index 643a68f48e4a..000000000000
--- a/biology/crux/pkg-plist
+++ /dev/null
@@ -1,56 +0,0 @@
-bin/crux
-bin/redpoint
-bin/MrRogers
-lib/Crux/lib/libCx.so
-lib/Crux/parsers/Fasta.log
-lib/Crux/parsers/Fasta.pickle
-%%PYTHON_SITELIBDIR%%/Crux/CTMatrix.so
-%%PYTHON_SITELIBDIR%%/Crux/Character.so
-%%PYTHON_SITELIBDIR%%/Crux/Config.py
-@rmtry %%PYTHON_SITELIBDIR%%/Crux/Config.pyo
-%%PYTHON_SITELIBDIR%%/Crux/Copying.py
-@rmtry %%PYTHON_SITELIBDIR%%/Crux/Copying.pyo
-%%PYTHON_SITELIBDIR%%/Crux/DistMatrix/Nj.so
-%%PYTHON_SITELIBDIR%%/Crux/DistMatrix/__init__.py
-%%PYTHON_SITELIBDIR%%/Crux/DistMatrix/__init__.so
-%%PYTHON_SITELIBDIR%%/Crux/Fasta.so
-%%PYTHON_SITELIBDIR%%/Crux/Mc3/Chain.so
-%%PYTHON_SITELIBDIR%%/Crux/Mc3/Post.so
-%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.py
-%%PYTHON_SITELIBDIR%%/Crux/Mc3/__init__.so
-%%PYTHON_SITELIBDIR%%/Crux/Newick.so
-%%PYTHON_SITELIBDIR%%/Crux/Taxa.so
-%%PYTHON_SITELIBDIR%%/Crux/Tree/Bipart.so
-%%PYTHON_SITELIBDIR%%/Crux/Tree/Lik.so
-%%PYTHON_SITELIBDIR%%/Crux/Tree/Sumt.so
-%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.py
-%%PYTHON_SITELIBDIR%%/Crux/Tree/__init__.so
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/CTMatrix.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Character.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxMath.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxMat.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxNewickLexer.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/CxRi.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Cx.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/DistMatrix/CxDistMatrixLexer.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Crux/Tree/CxLik.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/Nj.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/DistMatrix/__init__.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Fasta.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/Chain.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/Post.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Mc3/__init__.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Newick.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/SFMT/SFMT.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Taxa.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Bipart.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Lik.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/Sumt.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/Tree/__init__.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/__init__.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/libc.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Crux/libm.pxd
-%%PYTHON_SITELIBDIR%%/Crux/include/Parsing.pxd
-%%PYTHON_SITELIBDIR%%/Crux/__init__.py
-%%PYTHON_SITELIBDIR%%/Crux/__init__.so
-%%PYTHON_SITELIBDIR%%/Parsing.so
diff --git a/biology/plink/Makefile b/biology/plink/Makefile
deleted file mode 100644
index b77e97515548..000000000000
--- a/biology/plink/Makefile
+++ /dev/null
@@ -1,30 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	plink
-PORTVERSION=	1.07
-PORTREVISION=	8
-CATEGORIES=	biology science
-MASTER_SITES=	http://pngu.mgh.harvard.edu/~purcell/plink/dist/
-DISTNAME=	${PORTNAME}-${PORTVERSION}-src
-
-MAINTAINER=	jwb@FreeBSD.org
-COMMENT=	Whole genome association analysis toolset
-
-BROKEN=		no public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-LIB_DEPENDS=	liblapack.so:math/lapack
-
-# We need Fortran LDFLAGS to link with Lapack.
-USES=		fortran gmake zip
-
-PLIST_FILES=	bin/plink
-
-do-install:
-	${MKDIR} ${STAGEDIR}${PREFIX}/bin
-	${INSTALL_PROGRAM} ${WRKSRC}/plink ${STAGEDIR}${PREFIX}/bin
-
-.include <bsd.port.mk>
diff --git a/biology/plink/distinfo b/biology/plink/distinfo
deleted file mode 100644
index 0e6de032e915..000000000000
--- a/biology/plink/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (plink-1.07-src.zip) = 4af56348443d0c6a1db64950a071b1fcb49cc74154875a7b43cccb4b6a7f482b
-SIZE (plink-1.07-src.zip) = 2257297
diff --git a/biology/plink/files/patch-Makefile b/biology/plink/files/patch-Makefile
deleted file mode 100644
index e98b69aa6559..000000000000
--- a/biology/plink/files/patch-Makefile
+++ /dev/null
@@ -1,53 +0,0 @@
---- Makefile.orig	2009-10-10 11:00:20.000000000 -0500
-+++ Makefile	2012-09-07 08:24:26.000000000 -0500
-@@ -26,25 +26,25 @@
- WITH_WEBCHECK = 1
- FORCE_32BIT = 
- WITH_ZLIB = 1
--WITH_LAPACK = 
--FORCE_DYNAMIC = 
-+WITH_LAPACK = 1
-+FORCE_DYNAMIC = 1
- 
- # Put C++ compiler here; Windows has it's own specific version
- CXX_UNIX = g++
- CXX_WIN = c:\bin\mingw\bin\mingw32-g++.exe
- 
- # Any other compiler flags here ( -Wall, -g, etc)
--CXXFLAGS = 
-+# CXXFLAGS = 
- 
- # Misc
--LIB_LAPACK = /usr/lib/liblapack.so.3
-+LIB_LAPACK = ${LDFLAGS} -L${LOCALBASE}/lib -llapack -lblas
- 
- 
- # --------------------------------------------------------------------
- # Do not edit below this line
- # --------------------------------------------------------------------
- 
--CXXFLAGS += -O3 -I.
-+CXXFLAGS += -I.
- OUTPUT = plink
- 
- # Some system specific flags
-@@ -58,8 +58,8 @@
- endif
- 
- ifeq ($(SYS),UNIX)
-- CXXFLAGS += -DUNIX
-- CXX = $(CXX_UNIX)
-+ CXXFLAGS += -DUNIX -Dfopen64=fopen
-+ CXX ?= $(CXX_UNIX)
-  ifndef FORCE_DYNAMIC
-   CXXFLAGS += -static
-  endif
-@@ -128,7 +128,7 @@
- LIB += -ldl
- endif
- ifeq ($(SYS),UNIX)
--LIB += -ldl -lcrypt
-+LIB += -lcrypt
- endif
- endif
- 
diff --git a/biology/plink/files/patch-elf.cpp b/biology/plink/files/patch-elf.cpp
deleted file mode 100644
index 0cc22cb84e6a..000000000000
--- a/biology/plink/files/patch-elf.cpp
+++ /dev/null
@@ -1,25 +0,0 @@
---- elf.cpp.orig	2013-11-16 17:09:56.000000000 +0100
-+++ elf.cpp	2013-11-16 17:10:24.000000000 +0100
-@@ -1175,10 +1175,10 @@
- 	  << setw(8) << gcnt << " "
- 	  << setw(8) << (double)cnt / (double)gcnt << "\n";
- 
--      map<int,int>::iterator i = chr_cnt.begin();
--      while ( i != chr_cnt.end() )
-+      map<int,int>::iterator ichr = chr_cnt.begin();
-+      while ( ichr != chr_cnt.end() )
- 	{
--	  int c = i->first;
-+	  int c = ichr->first;
- 	  int x = chr_cnt.find( c )->second;
- 	  int y = chr_gcnt.find( c )->second;
- 	  
-@@ -1189,7 +1189,7 @@
- 	      << setw(8) << y << " "
- 	      << setw(8) << (double)x / (double)y << "\n";
- 	  
--	  ++i;
-+	  ++ichr;
- 	}
-       
-     }
diff --git a/biology/plink/files/patch-idhelp.cpp b/biology/plink/files/patch-idhelp.cpp
deleted file mode 100644
index c0026984f854..000000000000
--- a/biology/plink/files/patch-idhelp.cpp
+++ /dev/null
@@ -1,19 +0,0 @@
---- idhelp.cpp.orig	2013-11-16 17:11:42.000000000 +0100
-+++ idhelp.cpp	2013-11-16 17:12:53.000000000 +0100
-@@ -772,12 +772,12 @@
-       for (int j = 0 ; j < jointField.size(); j++ )
- 	{
- 	  set<IDField*> & jf = jointField[j];
--	  set<IDField*>::iterator j = jf.begin();
-+	  set<IDField*>::iterator jfit = jf.begin();
- 	  PP->printLOG(" { ");
--	  while ( j != jf.end() )
-+	  while ( jfit != jf.end() )
- 	    {
--	      PP->printLOG( (*j)->name + " " );
--	      ++j;
-+	      PP->printLOG( (*jfit)->name + " " );
-+	      ++jfit;
- 	    }
- 	  PP->printLOG(" }");
- 	}
diff --git a/biology/plink/files/patch-sets.cpp b/biology/plink/files/patch-sets.cpp
deleted file mode 100644
index 4d773fb36db2..000000000000
--- a/biology/plink/files/patch-sets.cpp
+++ /dev/null
@@ -1,18 +0,0 @@
---- sets.cpp.orig	2013-11-16 17:06:29.000000000 +0100
-+++ sets.cpp	2013-11-16 17:07:12.000000000 +0100
-@@ -768,11 +768,11 @@
-       //////////////////////////////////////////////
-       // Reset original missing status
- 
--      vector<Individual*>::iterator i = PP->sample.begin();
--      while ( i != PP->sample.end() )
-+      vector<Individual*>::iterator ipp = PP->sample.begin();
-+      while ( ipp != PP->sample.end() )
- 	{
--	  (*i)->missing = (*i)->flag;
--	  ++i;
-+	  (*ipp)->missing = (*ipp)->flag;
-+	  ++ipp;
- 	}
- 
-       ////////////////////////////////////////////////
diff --git a/biology/plink/pkg-descr b/biology/plink/pkg-descr
deleted file mode 100644
index cc38aca9112e..000000000000
--- a/biology/plink/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-PLINK is a free, open-source whole genome association analysis toolset,
-designed to perform a range of basic, large-scale analyses in a
-computationally efficient manner.
-
-WWW: http://pngu.mgh.harvard.edu/~purcell/plink/
diff --git a/biology/ssaha/Makefile b/biology/ssaha/Makefile
deleted file mode 100644
index a80bfbee2f64..000000000000
--- a/biology/ssaha/Makefile
+++ /dev/null
@@ -1,44 +0,0 @@
-# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
-# $FreeBSD$
-
-PORTNAME=	ssaha
-PORTVERSION=	3.1c
-PORTREVISION=	6
-CATEGORIES=	biology
-MASTER_SITES=	ftp://ftp.sanger.ac.uk/pub4/resources/software/ssaha/
-DISTNAME=	${PORTNAME}_v${PORTVERSION:S/.//}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Very fast matching and alignment of DNA sequences
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-NO_WRKSUBDIR=	yes
-BUILD_WRKSRC=		${WRKSRC}/Binary
-
-USES=		gmake
-USE_GCC=	any
-MAKE_ENV=	CCC="${CXX}" OPTIM="${CXXFLAGS}" THREAD_LIB="-pthread"
-MAKEFILE=	makefile
-ALL_TARGET=	ssaha
-
-PLIST_FILES=	bin/ssaha %%DATADIR%%/testSSAHA.csh \
-		${DATA_FILES:S,^,%%DATADIR%%/,}
-
-DATA_FILES=	test.fasta test_extract.fasta test_filter.fail \
-		test_filter.fastq test_protein.fasta README
-
-do-install:
-	(cd ${BUILD_WRKSRC} && ${INSTALL_PROGRAM} ssaha \
-		${STAGEDIR}${PREFIX}/bin)
-	@${MKDIR} ${STAGEDIR}${DATADIR}
-	(cd ${BUILD_WRKSRC} && ${INSTALL_SCRIPT} testSSAHA.csh \
-		${STAGEDIR}${DATADIR})
-.for i in ${DATA_FILES}
-	(cd ${BUILD_WRKSRC} && ${INSTALL_DATA} ${i} \
-		${STAGEDIR}${DATADIR})
-.endfor
-
-.include <bsd.port.mk>
diff --git a/biology/ssaha/distinfo b/biology/ssaha/distinfo
deleted file mode 100644
index f2cb833259a0..000000000000
--- a/biology/ssaha/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (ssaha_v31c.tar.gz) = 63fa38ccd2725db6ba10881f8cc94d899afd2eba9c2f6436223d9284c5abfced
-SIZE (ssaha_v31c.tar.gz) = 251510
diff --git a/biology/ssaha/files/patch-GlobalDefinitions.cpp b/biology/ssaha/files/patch-GlobalDefinitions.cpp
deleted file mode 100644
index dbf6ed8a038f..000000000000
--- a/biology/ssaha/files/patch-GlobalDefinitions.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./Global/GlobalDefinitions.cpp.orig	2004-03-01 13:51:28.000000000 -0300
-+++ ./Global/GlobalDefinitions.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -119,7 +119,7 @@
- MakeIntoWord::MakeIntoWord( int bitsPerSymbol, const char* tt ):
- bitsPerSymbol_( bitsPerSymbol ), tt_( tt ) 
- {
--  for ( unsigned int i(0) ; i < (1<<bitsPerSymbol_) ; ++i )
-+  for ( unsigned int i(0) ; i < ( unsigned int )(1<<bitsPerSymbol_) ; ++i )
-   {
-     map_.insert( make_pair( (static_cast<char>(tolower(tt[i]))),i ) );
-     map_.insert( make_pair( (static_cast<char>(toupper(tt[i]))),i ) );
diff --git a/biology/ssaha/files/patch-GlobalDefinitions.h b/biology/ssaha/files/patch-GlobalDefinitions.h
deleted file mode 100644
index 49d686d331b5..000000000000
--- a/biology/ssaha/files/patch-GlobalDefinitions.h
+++ /dev/null
@@ -1,92 +0,0 @@
---- ./Global/GlobalDefinitions.h.orig	2004-03-01 13:51:28.000000000 -0300
-+++ ./Global/GlobalDefinitions.h	2008-06-12 15:39:31.000000000 -0300
-@@ -79,7 +79,8 @@
- #include <map>
- #include <utility>
- #include <sys/types.h>
--#include <stdio.h>
-+#include <cstdio>
-+#include <cstring>
- #include <sys/file.h>
- #include <sys/mman.h>
- #include <sys/stat.h>
-@@ -726,8 +727,6 @@
- template <typename T> class Allocator
- {
- public:
--  typedef T MyType;
--
-   Allocator( T** ptr, const string& name, ostream& monStream=cerr ) : 
-     ptr_(ptr), name_(name), size_(0), isAllocated_(false), 
-     monStream_( monStream )
-@@ -788,32 +787,34 @@
-  
-   virtual void allocate( unsigned long size )
-   {
--    size_=size;
--    (*ptr_)=new T[size_];
--    isAllocated_=true;
-+    Allocator<T>::size_=size;
-+    (*Allocator<T>::ptr_)=new T[Allocator<T>::size_];
-+    Allocator<T>::isAllocated_=true;
-   }
- 
-   virtual void allocateAndZero( unsigned long size ) 
-   {
-     const unsigned char zero(0);
-     allocate(size);
--    memset( (void*)(*ptr_), zero, size_*sizeof(MyType) );
-+    memset( (void*)(*Allocator<T>::ptr_), zero, Allocator<T>::size_*sizeof(T) );
-   }
-   virtual void load( unsigned long size )
-   {
-     allocate(size);
--    loadFromFile( name_, (char*)(*ptr_), size_*sizeof(MyType), monStream_ );
-+    loadFromFile( Allocator<T>::name_, (char*)(*Allocator<T>::ptr_),
-+        Allocator<T>::size_*sizeof(T), Allocator<T>::monStream_ );
-   }
-   virtual void save()
-   {
--    saveToFile( name_, (char*)(*ptr_), size_*sizeof(MyType), monStream_ );
-+    saveToFile( Allocator<T>::name_, (char*)(*Allocator<T>::ptr_),
-+        Allocator<T>::size_*sizeof(T), Allocator<T>::monStream_ );
-   }
- 
-   virtual void deallocate()
-   {
--    if (!isAllocated_) return;
--    delete [] (*ptr_);
--    isAllocated_=false;
-+    if (!Allocator<T>::isAllocated_) return;
-+    delete [] (*Allocator<T>::ptr_);
-+    Allocator<T>::isAllocated_=false;
-   }
- protected:
- };
-@@ -892,7 +893,7 @@
-     if (isAllocated_) return;
-     mode_ = MemoryMapper::createMap;
-     size_ = size;
--    (*ptr_) = (T*) linkToMap(mode_,name_,size_*sizeof(MyType));
-+    (*ptr_) = (T*) linkToMap(mode_,name_,size_*sizeof(T));
-     isAllocated_ = true;
-   }
- 
-@@ -908,7 +909,7 @@
-     if (isAllocated_) return;
-     mode_ = MemoryMapper::readMap;
-     size_ = size;
--    (*ptr_) = (T*) linkToMap(mode_,name_,size_*sizeof(MyType));
-+    (*ptr_) = (T*) linkToMap(mode_,name_,size_*sizeof(T));
-     isAllocated_ = true;
-   }
- 
-@@ -921,7 +922,7 @@
-   virtual void deallocate()
-   {
-     if (!isAllocated_) return;
--    if(munmap((caddr_t)(*ptr_), size_*sizeof(MyType)) < 0)
-+    if(munmap((caddr_t)(*ptr_), size_*sizeof(T)) < 0)
-       perror("unmap error"); // don't throw - called from destructor!
-     close(fileDesc_);
-     if (mode_.deleteFileOnExit) shm_unlink(name_.c_str());
diff --git a/biology/ssaha/files/patch-HashTable.cpp b/biology/ssaha/files/patch-HashTable.cpp
deleted file mode 100644
index c57e3745c639..000000000000
--- a/biology/ssaha/files/patch-HashTable.cpp
+++ /dev/null
@@ -1,20 +0,0 @@
---- ./HashTable/HashTable.cpp.orig	2004-03-01 13:51:28.000000000 -0300
-+++ ./HashTable/HashTable.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -265,7 +265,7 @@
- void HashTable::countWords( SequenceAdapter& thisSeq )
- {
- 
--   for ( int j(0) ; j < thisSeq.size() ; ++ j )
-+   for ( WordSequence::size_type j(0) ; j < thisSeq.size() ; ++ j )
-    {
-      // only count words that have not been flagged
-      pWordPositionInHitList_[(thisSeq[j]&(~gCursedWord))]
-@@ -284,7 +284,7 @@
-       // NB We stop at the last but one element of the 
-       // sequence (as the last isn't a full word)
- 
--   for ( int j(0) ; j < thisSeq.size() ; ++ j )
-+   for ( WordSequence::size_type j(0) ; j < thisSeq.size() ; ++ j )
-       {
- 	thisWord = thisSeq[j];
- 	// only hash words that have not been flagged
diff --git a/biology/ssaha/files/patch-HashTableGeneric.cpp b/biology/ssaha/files/patch-HashTableGeneric.cpp
deleted file mode 100644
index 0d1ffb441303..000000000000
--- a/biology/ssaha/files/patch-HashTableGeneric.cpp
+++ /dev/null
@@ -1,48 +0,0 @@
---- ./HashTable/HashTableGeneric.cpp.orig	2005-06-21 05:48:27.000000000 -0300
-+++ ./HashTable/HashTableGeneric.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -63,18 +63,18 @@
- ( ostream& monitoringStream,
-   const string& name,
-   Allocator<PositionInHitList>& arrayAllocator ) : 
--  isInitialized_( false ), 
--  monitoringStream_( monitoringStream ),
-   name_( name ),
--  bitsPerSymbol_( gBaseBits ), // default: may be overwritten in subclass ctor
-+  isInitialized_( false ), 
-   maxNumHits_( defaultMaxNumHits ),
-+  bitsPerSymbol_( gBaseBits ), // default: may be overwritten in subclass ctor
-   hitListFormat_( gNotSpecified ),
-+  monitoringStream_( monitoringStream ),
-   pArrayAllocator_
-   ( arrayAllocator.clone(&pWordPositionInHitList_,
- 			 name+(string)".head",
- 			 monitoringStream_) ),
--  pSequenceSizes_(NULL),
--  pNameReader_(NULL)
-+  pNameReader_(NULL),
-+  pSequenceSizes_(NULL)
-   {
-     monitoringStream_ << "constructing HashTableGeneric\n";
-     if (name_=="")
-@@ -290,7 +290,7 @@
-   WordSequence thisSeq;
-     
-   // NB sequences are numbered 1...n not 0...n-1
--  for ( unsigned int i(1); i <= numSeqs ; i++ )
-+  for ( int i(1); i <= numSeqs ; i++ )
-   {
-     if( sequenceReader.getNextSequence( thisSeq, wordLength_) == -1 ) 
-     {
-@@ -973,10 +973,10 @@
- 
- SequenceAdapterWithOverlap::SequenceAdapterWithOverlap
- ( int bitsPerSymbol, int wordLength, int stepLength ) :
-+SequenceAdapter(),
- bitsPerSymbol_( bitsPerSymbol ), 
- wordLength_( wordLength ), 
--stepLength_( stepLength ),
--SequenceAdapter() 
-+stepLength_( stepLength )
- {
- 
-   maskLeft_  = new Word[ wordLength_ ];
diff --git a/biology/ssaha/files/patch-HashTablePacked.cpp b/biology/ssaha/files/patch-HashTablePacked.cpp
deleted file mode 100644
index 6efc6d24bd77..000000000000
--- a/biology/ssaha/files/patch-HashTablePacked.cpp
+++ /dev/null
@@ -1,29 +0,0 @@
---- ./HashTable/HashTablePacked.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./HashTable/HashTablePacked.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -132,7 +132,7 @@
- void HashTablePacked::countWords( SequenceAdapter& thisSeq )
- {
- 
--   for ( int j(0) ; j < thisSeq.size() ; ++ j )
-+   for ( WordSequence::size_type j(0) ; j < thisSeq.size() ; ++ j )
-    {
-      // only count words that have not been flagged
-      pWordPositionInHitList_[(thisSeq[j]&(~gCursedWord))]
-@@ -151,7 +151,7 @@
-   // NB We stop at the last but one element of the 
-   // sequence (as the last isn't a full word)
- 
--   for ( int j(0) ; j < thisSeq.size() ; ++ j )
-+   for ( WordSequence::size_type j(0) ; j < thisSeq.size() ; ++ j )
-       {
- 	thisWord = thisSeq[j];
- 
-@@ -200,7 +200,7 @@
-       for ( WordSequence::const_iterator thisWord(seq.begin());
-             thisWord != last ; ++thisWord )
-       {
--	int oldSize(packedHits.size()); // %%%%%%
-+//	int oldSize(packedHits.size()); // %%%%%%
- 	matchWordDeluxe( *thisWord, packedHits, baseOffset );
- 	//	cout << printResidue(*thisWord, wordLength_) << " "
- 	//  << packedHits.size()-oldSize;
diff --git a/biology/ssaha/files/patch-HashTablePacked.h b/biology/ssaha/files/patch-HashTablePacked.h
deleted file mode 100644
index c00860d1bbfd..000000000000
--- a/biology/ssaha/files/patch-HashTablePacked.h
+++ /dev/null
@@ -1,16 +0,0 @@
---- ./HashTable/HashTablePacked.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./HashTable/HashTablePacked.h	2008-06-12 15:39:31.000000000 -0300
-@@ -236,11 +236,11 @@
-     HashTableView<PositionPacked,HashTablePacked>
-     (monitoringStream, name, hitListAllocator, arrayAllocator),
-     wordNum_(0),
-+    numRepeats_(0),
-+    substituteThreshold_(0),
-     pMatchSequence_(&HashTablePacked::matchSequenceStandard),
-     pMatchWord_(&HashTablePacked::matchWordStandard),
-     pGenerateSubstitutes_(&generateSubstitutesDNA),
--    numRepeats_(0),
--    substituteThreshold_(0),
-     sorter_(4,(sizeof(PositionPacked)*8)/4)
-     {
-       hitListFormat_ = g32BitPacked;
diff --git a/biology/ssaha/files/patch-HashTableTranslated.cpp b/biology/ssaha/files/patch-HashTableTranslated.cpp
deleted file mode 100644
index e4ab9af82423..000000000000
--- a/biology/ssaha/files/patch-HashTableTranslated.cpp
+++ /dev/null
@@ -1,77 +0,0 @@
---- ./HashTable/HashTableTranslated.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./HashTable/HashTableTranslated.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -50,9 +50,9 @@
-  		   Allocator<PositionPacked>& hitListAllocator,
- 		   Allocator<PositionInHitList>& arrayAllocator 
- 		   ):
--  queryFrame_(0),
-   HashTablePacked( monitoringStream, name, 
--		   hitListAllocator, arrayAllocator  ) 
-+		   hitListAllocator, arrayAllocator  ), 
-+  queryFrame_(0)
- {
-   hitListFormat_ = g32BitPackedProtein;
-   bitsPerSymbol_ = gResidueBits;
-@@ -135,12 +135,12 @@
-   Allocator<PositionPacked>& hitListAllocator,
-   Allocator<PositionInHitList>& arrayAllocator 
-   ):
-+  HashTablePacked( monitoringStream, name, 
-+		     hitListAllocator, arrayAllocator  ),
-+  codonEncoder_(5),
-   queryFrame_(0),
-   queryMult_(1),
--  codonEncoder_(5),
--  pMatchSequence_( &HashTablePackedProtein::matchSequenceProtein ),
--  HashTablePacked( monitoringStream, name, 
--		     hitListAllocator, arrayAllocator  ) 
-+  pMatchSequence_( &HashTablePackedProtein::matchSequenceProtein )
- {
-     hitListFormat_ = g32BitPackedProtein;
-     bitsPerSymbol_ = gResidueBits;
-@@ -249,14 +249,14 @@
-   Allocator<PositionPacked>& hitListAllocator,
-   Allocator<PositionInHitList>& arrayAllocator
-   ) :
-+  HashTableGeneric( monitoringStream, name, arrayAllocator ),
-   hashFwd_( monitoringStream, name+(string)"_fwd", 
- 	    hitListAllocator, arrayAllocator ),
-   hashRev_( monitoringStream, name+(string)"_rev", 
- 	    hitListAllocator, arrayAllocator ),
-   pHash_(&hashFwd_),
-   codonEncoder_(5),
--  pMatchSequence_( &HashTableTranslated::matchSequenceProtein ),
--  HashTableGeneric( monitoringStream, name, arrayAllocator ) 
-+  pMatchSequence_( &HashTableTranslated::matchSequenceProtein )
- {
-   bitsPerSymbol_=gResidueBits;
-   hitListFormat_ = gTranslated;
-@@ -344,8 +344,8 @@
- 
-     // Change encoding mode
-     SequenceReaderModeFlagReplace mode('X');
--    assert(ttCodon['X']==ttProtein['X']);
--    assert(ttCodon['X']!=nv);
-+    assert(ttCodon[(int)'X']==ttProtein[(int)'X']);
-+    assert(ttCodon[(int)'X']!=nv);
-     codonEncoder_.changeMode( &mode );
- 
- 
-@@ -418,7 +418,7 @@
-   seq->link( translatedSeq );
- 
-   // NB sequences are numbered 1...n not 0...n-1
--  for ( unsigned int i(1); i <= numSeqs ; i++ )
-+  for ( int i(1); i <= numSeqs ; i++ )
-   {
-     //    cout << "hashing sequence " << i << endl;
-     if( sequenceReader.getNextSequence( thisSeq, eDNAWordSizeForHashing) == -1 ) 
-@@ -520,7 +520,7 @@
- int HashTableTranslated::getHitTypeSize( void ) const 
- {
-   assert(1==0);
--  return NULL;
-+  return 0;
- }
- void HashTableTranslated::allocateHitList( unsigned long size ) 
- {
diff --git a/biology/ssaha/files/patch-MatchAligner.cpp b/biology/ssaha/files/patch-MatchAligner.cpp
deleted file mode 100644
index e7420b1ddec4..000000000000
--- a/biology/ssaha/files/patch-MatchAligner.cpp
+++ /dev/null
@@ -1,94 +0,0 @@
---- ./QueryManager/MatchAligner.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/MatchAligner.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -53,13 +53,13 @@
-   bool reverseQueryCoords,
-   bool doAlignment,
-   ostream& outputStream ):
-+  pAlign_(pAlign),
-+  outputStream_(outputStream),
-   querySource_(querySource), 
-   subjectSource_(subjectSource),
--  pAlign_(pAlign),
-   //  numCols_(numCols),
-   reverseQueryCoords_(reverseQueryCoords),
--  doAlignment_(doAlignment),
--  outputStream_(outputStream)
-+  doAlignment_(doAlignment)
- {
- } // ~MatchTaskAlign::MatchTaskAlign
- 
-@@ -194,10 +194,10 @@
-   int bandExtension,
-   ScoreTable* pTable,
-   ostream& outputStream ) :
-+  outputStream_(outputStream),
-   numCols_(numCols),
-   bandExtension_(bandExtension),
--  pTable_(pTable),
--  outputStream_(outputStream)
-+  pTable_(pTable)
- {
-   pBufSeq1_= new char [numCols+1];
-   pBufSeq2_= new char [numCols+1];
-@@ -563,17 +563,17 @@
-       //  cout << int ( ttDNA[ *(pChar++ ] << 4
-       //     | (ttDNA[ *(pChar++) ] << 2)
-       //     | ttDNA[ *(pChar++) ] ) << endl; 
--      if (    (ttDNA[ *(pChar)   ]==nv)
--           || (ttDNA[ *(pChar+1) ]==nv)
--           || (ttDNA[ *(pChar+2) ]==nv) )
-+      if (    (ttDNA[ (int) *(pChar)   ]==nv)
-+           || (ttDNA[ (int) *(pChar+1) ]==nv)
-+           || (ttDNA[ (int) *(pChar+2) ]==nv) )
-       {	
- 	*i='X';
-       } // ~if   
-       else
-       {
--	*i= gResidueNames[ ttCodon[ ttDNA[ *(pChar) ] << 4
--				  | ttDNA[ *(pChar+1) ] << 2
--				  | ttDNA[ *(pChar+2) ] ] ];
-+	*i= gResidueNames[ ttCodon[ ttDNA[ (int) *(pChar) ] << 4
-+				  | ttDNA[ (int) *(pChar+1) ] << 2
-+				  | ttDNA[ (int) *(pChar+2) ] ] ];
-       } // ~else
- 
-     } // ~for i
-@@ -983,7 +983,7 @@
- 
- void print( PathMatrix<PathType>& p )
- {
--  for (int i(0); i< p.front().size(); i++)
-+  for (size_t i(0); i< p.front().size(); i++)
-   {
-     for (vector<vector<PathType> >::iterator j(p.begin());
- 	 j!=p.end();++j)
-@@ -1249,16 +1249,16 @@
-   bandWidth_(p2Size-p1Size+1),
-   bandLength_(p1Size+1),
-   colSize_(p2Size-p1Size+1+(2*bandExtension_)),
--  fillCell_(),
-   finalFrame1_(p1FinalFrame),
-   finalFrame2_(p2FinalFrame),
-   numFrames1_((p1Trans[1]==NULL)?1:gNumReadingFrames),
-   numFrames2_((p2Trans[1]==NULL)?1:gNumReadingFrames),
-+  fillCell_(),
-+  getScore_(scoreTable),
-   v1_(colSize_, veryBadScore3D ), 
-   v2_(colSize_, veryBadScore3D ),
-   pLast_(&v1_),
--  pCurrent_(&v2_),
--  getScore_(scoreTable)
-+  pCurrent_(&v2_)
- {
-   
-   p1_[0] = p1Trans[0];
-@@ -1287,7 +1287,7 @@
- {
- 
-   //  ScoreType lastScore, prevFrameScore1, prevFrameScore2;
--  int i,j,k,l;
-+  int i,j;
- 
-   matrix.resize(bandLength_, vector<PathType3D>(colSize_) );
- 
diff --git a/biology/ssaha/files/patch-MatchAligner.h b/biology/ssaha/files/patch-MatchAligner.h
deleted file mode 100644
index 1eafad595c91..000000000000
--- a/biology/ssaha/files/patch-MatchAligner.h
+++ /dev/null
@@ -1,33 +0,0 @@
---- ./QueryManager/MatchAligner.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/MatchAligner.h	2008-06-12 15:39:31.000000000 -0300
-@@ -315,13 +315,13 @@
- 
-   static char getCodon( const char* pChar )
-   {
--    return (  (    (ttDNA[ *pChar ] ==nv)
--		   || (ttDNA[ *(pChar+1) ] ==nv)
--		   || (ttDNA[ *(pChar+2) ] ==nv) )
-+    return (  (    (ttDNA[ (int) *pChar ] ==nv)
-+		   || (ttDNA[ (int) *(pChar+1) ] ==nv)
-+		   || (ttDNA[ (int) *(pChar+2) ] ==nv) )
- 	      ? 'X'
--	      : gResidueNames[ ttCodon[ ttDNA[ *(pChar) ] << 4
--				      | ttDNA[ *(pChar+1) ] << 2
--				      | ttDNA[ *(pChar+2) ] ] ] );
-+	      : gResidueNames[ ttCodon[ ttDNA[ (int) *(pChar) ] << 4
-+				      | ttDNA[ (int) *(pChar+1) ] << 2
-+				      | ttDNA[ (int) *(pChar+2) ] ] ] );
-   } // ~getCodon
- 
- 
-@@ -519,8 +519,8 @@
-   : public vector<vector<PATH_TYPE> >
- {
- public:
--  typedef pair<vector<vector<PATH_TYPE> >::iterator,
--    vector<PATH_TYPE>::iterator> CellIterator;
-+  typedef pair<typename vector<vector<PATH_TYPE> >::iterator,
-+    typename vector<PATH_TYPE>::iterator> CellIterator;
- 
-   template<class MATRIX_FILLER> ScoreType fillIn( MATRIX_FILLER& doMatrix )
-   {
diff --git a/biology/ssaha/files/patch-MatchStore.h b/biology/ssaha/files/patch-MatchStore.h
deleted file mode 100644
index 076639489869..000000000000
--- a/biology/ssaha/files/patch-MatchStore.h
+++ /dev/null
@@ -1,54 +0,0 @@
---- ./QueryManager/MatchStore.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/MatchStore.h	2008-06-12 15:39:31.000000000 -0300
-@@ -93,20 +93,20 @@
-   virtual SequenceNumber getSubjectNum( void ) const 
-     { return subjectNum_; }
-   //  virtual inline string  getSubjectName( void ) const;
--  virtual inline const char*  getSubjectName( void ) const;
-+  virtual const char*  getSubjectName( void ) const;
-   virtual SequenceOffset getSubjectStart( void ) const 
-     { return subjectStart_; }
-   virtual SequenceOffset getSubjectEnd( void ) const 
-     { return subjectEnd_; }
- 
--  virtual inline SequenceNumber getQueryNum( void ) const;
--  virtual inline string         getQueryName( void ) const;
-+  virtual SequenceNumber getQueryNum( void ) const;
-+  virtual string         getQueryName( void ) const;
-   virtual SequenceOffset getQueryStart( void ) const 
-     { return queryStart_; }
-   virtual SequenceOffset getQueryEnd( void ) const 
-     { return queryEnd_; }
-   
--  virtual inline int  getQuerySize( void ) const; 
-+  virtual int  getQuerySize( void ) const; 
-   virtual int  getNumBases(void ) const 
-     { return numBases_; }
-   virtual bool isQueryForward( void ) const 
-@@ -127,7 +127,6 @@
-              SequenceOffset subjectEnd,
-              bool isQueryForward,
-              bool isSubjectForward ):
--    myStore_( myStore ),
-     subjectNum_( subjectNum ),  
-     numBases_( numBases ),  
-     queryStart_( queryStart ),
-@@ -135,7 +134,8 @@
-     subjectStart_( subjectStart ),
-     subjectEnd_( subjectEnd ),
-     isQueryForward_( isQueryForward ),
--    isSubjectForward_( isSubjectForward ){}
-+    isSubjectForward_( isSubjectForward ),
-+    myStore_( myStore )   {}
- 
-   SequenceNumber subjectNum_;
-   SequenceOffset numBases_;
-@@ -444,7 +444,7 @@
-   ( 
-     unsigned int maxToSort = 1<<30,
-     double partialThreshold = 0.0
--  ) : sorter_(), maxToSort_(maxToSort), partialThreshold_(partialThreshold) {}
-+  ) : maxToSort_(maxToSort), partialThreshold_(partialThreshold), sorter_()  {}
-   // TBD should be virtual???
-   void operator()(MatchStore& store )
-   {
diff --git a/biology/ssaha/files/patch-MatchStoreGapped.h b/biology/ssaha/files/patch-MatchStoreGapped.h
deleted file mode 100644
index 7252f06a6ad8..000000000000
--- a/biology/ssaha/files/patch-MatchStoreGapped.h
+++ /dev/null
@@ -1,25 +0,0 @@
---- ./QueryManager/MatchStoreGapped.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/MatchStoreGapped.h	2008-06-12 15:39:31.000000000 -0300
-@@ -57,7 +57,8 @@
- {
-  public:
-   MatchAlgorithm( int numRepeats ) : 
--    numRepeats_( numRepeats ), sortNeeded_(true) {}
-+    sortNeeded_(true), numRepeats_( numRepeats )  {}
-+  virtual ~MatchAlgorithm() {};
-   void operator()  
-     ( WordSequence& querySeq, 
-       MatchAdder& addMatch, 
-@@ -82,10 +83,10 @@
-  public:
-   MatchAlgorithmGapped
-     ( int maxGap, int maxInsert, int minToProcess, int numRepeats ):
-+    MatchAlgorithm( numRepeats ),
-     maxGap_( maxGap ),
-     maxInsert_( maxInsert ), 
--    minToProcess_( minToProcess ),
--    MatchAlgorithm( numRepeats )
-+    minToProcess_( minToProcess )
-     {}
- 
-   virtual void generateMatches
diff --git a/biology/ssaha/files/patch-MatchStoreUngapped.h b/biology/ssaha/files/patch-MatchStoreUngapped.h
deleted file mode 100644
index f71815fa673c..000000000000
--- a/biology/ssaha/files/patch-MatchStoreUngapped.h
+++ /dev/null
@@ -1,13 +0,0 @@
---- ./QueryManager/MatchStoreUngapped.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/MatchStoreUngapped.h	2008-06-12 15:39:31.000000000 -0300
-@@ -60,8 +60,8 @@
-  public:
-   MatchAlgorithmUngapped
-     ( int minToProcess, int numRepeats ):
--    minToProcess_( minToProcess ),
--    MatchAlgorithm( numRepeats )
-+    MatchAlgorithm( numRepeats ),
-+    minToProcess_( minToProcess )
-     {}
- 
-   virtual void generateMatches
diff --git a/biology/ssaha/files/patch-QueryManager.cpp b/biology/ssaha/files/patch-QueryManager.cpp
deleted file mode 100644
index bb80ea676c1d..000000000000
--- a/biology/ssaha/files/patch-QueryManager.cpp
+++ /dev/null
@@ -1,54 +0,0 @@
---- ./QueryManager/QueryManager.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/QueryManager.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -164,8 +164,8 @@
- // MatchPolicy member function definitions
- 
- MatchPolicy::MatchPolicy( HashTableGeneric& subjectTable ) :
--  subjectTable_( subjectTable ), 
--  queryWordLength_( subjectTable.getWordLength() ) 
-+  queryWordLength_( subjectTable.getWordLength() ),
-+  subjectTable_( subjectTable )
- {}
- 
- 
-@@ -203,8 +203,8 @@
- 
- MatchPolicyProteinProtein::MatchPolicyProteinProtein
- ( HashTablePackedProtein& subjectTable ) :
--subjectTable_( subjectTable ),
--MatchPolicy( subjectTable )
-+MatchPolicy( subjectTable ),
-+subjectTable_( subjectTable )
- {
- 
-   subjectTable_.setQueryProtein();
-@@ -386,9 +386,9 @@
-   QueryManager::QueryManager
-   ( SequenceReader& querySeqs,  
-     HashTableGeneric& subjectSeqs, ostream& monitoringStream ) :
--   queryReader_( querySeqs ), 
-    subjectTable_(  subjectSeqs ), 
--   monitoringStream_( monitoringStream )
-+   monitoringStream_( monitoringStream ),
-+   queryReader_( querySeqs ) 
-    {
-      monitoringStream_ << "constructing QueryManager\n";
- 
-@@ -518,7 +518,7 @@
- 
-       task( store );
- 
--      if ( queryReader_.getLastSequenceNumber() == queryEnd ) break;
-+      if ( (int)queryReader_.getLastSequenceNumber() == queryEnd ) break;
- 
-       // clear the query sequence ready to read in next query
-       querySeqFwd.clear();
-@@ -530,7 +530,7 @@
-     } // ~while
-     while ( numBasesInLast != -1 );
- 
--    if (    ( queryReader_.getLastSequenceNumber() < queryEnd  )
-+    if (    ( (int)queryReader_.getLastSequenceNumber() < queryEnd  )
-          && ( queryEnd != - 1 ) )
-     {
-       monitoringStream_ << "Info: requested final sequence (" << queryEnd
diff --git a/biology/ssaha/files/patch-QueryManager.h b/biology/ssaha/files/patch-QueryManager.h
deleted file mode 100644
index fef80e7b3865..000000000000
--- a/biology/ssaha/files/patch-QueryManager.h
+++ /dev/null
@@ -1,19 +0,0 @@
---- ./QueryManager/QueryManager.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/QueryManager.h	2008-06-12 15:39:31.000000000 -0300
-@@ -145,6 +145,7 @@
-     //    readFrame_(0), 
-     pStore_(NULL), 
-     subjectTable_( subjectTable ) {}
-+  virtual ~MatchAdder() {};
-   virtual void operator()(  SequenceNumber subjectNum,
- 			    SequenceOffset numBases,
- 			    SequenceOffset queryStart,
-@@ -172,7 +173,7 @@
- {
- public:
-   MatchAdderImp( HashTableGeneric& subjectTable ) : 
--    lastSubjectNum_(0), name_(), MatchAdder( subjectTable ) {}
-+    MatchAdder( subjectTable ), name_(), lastSubjectNum_(0)  {}
-     virtual void operator()(  SequenceNumber subjectNum,
- 				     SequenceOffset numBases,
- 				     SequenceOffset queryStart,
diff --git a/biology/ssaha/files/patch-README b/biology/ssaha/files/patch-README
deleted file mode 100644
index e1a8461090b7..000000000000
--- a/biology/ssaha/files/patch-README
+++ /dev/null
@@ -1,13 +0,0 @@
---- ./Binary/README.orig	2004-08-25 11:35:58.000000000 -0300
-+++ ./Binary/README	2008-06-12 15:39:31.000000000 -0300
-@@ -34,6 +34,10 @@
- 
- Patched for linux/g++3.2.2 25/8/4 AWS.
- 
-+This version was patched for Linux/GCC 4.0.2 and Mac OS X/GCC 4.0.1 by
-+Conrad Halling on 26 January 2006. See http://www.bifx.org/SSAHA/index.html
-+for more information.
-+
- 1. To compile the main ssaha executable
- 
- make ssaha
diff --git a/biology/ssaha/files/patch-SSAHAMain.cpp b/biology/ssaha/files/patch-SSAHAMain.cpp
deleted file mode 100644
index e0e078386263..000000000000
--- a/biology/ssaha/files/patch-SSAHAMain.cpp
+++ /dev/null
@@ -1,57 +0,0 @@
---- ./Global/SSAHAMain.cpp.orig	2004-03-01 14:12:38.000000000 -0300
-+++ ./Global/SSAHAMain.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -86,7 +86,8 @@
- Copyright (C) 2004 by Genome Research Limited\n\
- This software is released under the terms of version 2 of the GNU General\n\
- Public Licence, as published by the Free Software Foundation.\n\
--This is SSAHA Version 3.2, released 1st March 2004.\n\n";
-+This is SSAHA Version 3.2, released 1st March 2004,\n\
-+patched 26 January 2006.\n\n";
- 
-   Timer timeStamp;
- 
-@@ -623,7 +624,7 @@
-     {
-       pHashTable = new HashTablePacked( cerr, queryParams.saveName );
-       if (    ( queryParams.wordLength <= 0 )
--	      || ( queryParams.wordLength*gBaseBits > ( 8*sizeof(Word)) -1 ) )
-+	      || ( (size_t) queryParams.wordLength*gBaseBits > ( 8*sizeof(Word)) -1 ) )
-       {
- 	cerr << "Warning: word length (" << queryParams.wordLength 
- 	     << ") outside valid range (0 to " 
-@@ -656,7 +657,7 @@
-       } // ~if
- 
-       if (    ( queryParams.wordLength <= 0 )
--	      || ( queryParams.wordLength*gResidueBits > ( 8*sizeof(Word)) -1 ) )
-+	      || ( (size_t) queryParams.wordLength*gResidueBits > ( 8*sizeof(Word)) -1 ) )
-       {
- 	cerr << "Warning: word length (" << queryParams.wordLength 
- 	     << ") outside valid range (0 to " 
-@@ -782,7 +783,7 @@
-   cerr << "Info: would expect " << expectedNumHits 
-          << " hits per word for a random database of this size." << endl;
- 
--  queryParams.maxStore=1+(int)(expectedNumHits*queryParams.maxStore);
-+  queryParams.maxStore=(int)(expectedNumHits*queryParams.maxStore);
- 
-   cerr << "Info: will ignore hits on words that occur more than " 
-        << queryParams.maxStore << " times in the database." << endl;
-@@ -964,7 +965,7 @@ delete pQueryMode;
- 
-     } // ~else
- 
--    assert( pAligner!=false);
-+    assert(pAligner!=NULL);
- 
-     // ownership of *pAligner passes to *pPrintTask
-     pPrintTask = new MatchTaskAlign( *pQuery, *pSubjectSource, pAligner,
-@@ -1151,7 +1152,7 @@
-     } // ~if
-     dirent* dirEntry;
-     string entryName;
--    while( dirEntry = readdir(pDir) )
-+    while( 0 != ( dirEntry = readdir(pDir) ) )
-     {
-       entryName = (string) dirEntry->d_name;
-       if ((entryName == ".")||(entryName=="..")) continue;
diff --git a/biology/ssaha/files/patch-SSAHAMain.h b/biology/ssaha/files/patch-SSAHAMain.h
deleted file mode 100644
index 5cb9234f7c0f..000000000000
--- a/biology/ssaha/files/patch-SSAHAMain.h
+++ /dev/null
@@ -1,27 +0,0 @@
---- ./Global/SSAHAMain.h.orig	2004-03-01 13:51:28.000000000 -0300
-+++ ./Global/SSAHAMain.h	2008-06-12 15:39:31.000000000 -0300
-@@ -41,6 +41,7 @@
- #include <string>
- #include <iostream>
- #include <memory>
-+#include <cstdlib>
- class SequenceReaderMulti;
- class SequenceReader;
- class HashTable;
-@@ -131,7 +132,7 @@
-   -1,        // int    queryEnd; 
-   -1,        // int    wordLength;
-   -1,        // int    stepLength;
--  100000,    // int    maxToStore; 
-+  10000,     // int    maxToStore; 
-   1,         // int    minToPrint;
-   -1,        // int    maxGap;
-   0,         // int    maxInsert;
-@@ -174,6 +175,7 @@
- 
-   CommandLineArg( const string& nameLong, const string& nameShort ) :
-     nameLong_( nameLong ), nameShort_( nameShort ) {}
-+  virtual ~CommandLineArg() {};  // base class with virtual functions requires virtual constructor
-   // Is the current argument equal to 'my' argument name?
-   virtual bool isThisMe( const string& argName )
-   { 
diff --git a/biology/ssaha/files/patch-SequenceEncoder.cpp b/biology/ssaha/files/patch-SequenceEncoder.cpp
deleted file mode 100644
index 5832a96a40bb..000000000000
--- a/biology/ssaha/files/patch-SequenceEncoder.cpp
+++ /dev/null
@@ -1,75 +0,0 @@
---- ./SequenceReader/SequenceEncoder.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceEncoder.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -54,10 +54,10 @@
-     ostream& monitoringStream):
-     monitoringStream_( monitoringStream ),
-     tt_(tt), sourceData_( sourceData ), bitsPerSymbol_(bitsPerSymbol),
-+    symbolMask_((1<<bitsPerSymbol)-1),
-     pState_( new SequenceReaderModeIgnore( monitoringStream ) ),
-     wordFlag_(0),
--    doubleBitShift_(bitsPerSymbol<<1),
--    symbolMask_((1<<bitsPerSymbol)-1)
-+    doubleBitShift_(bitsPerSymbol<<1)
-   //    numSymbolPairs_(wordLength>>1),
-   //   oddNumSymbols_(wordLength%1==1),
-   { 
-@@ -71,13 +71,13 @@
-   ett_( rhs.ett_ ),
-   sourceData_( rhs.sourceData_ ),
-   bitsPerSymbol_( rhs.bitsPerSymbol_ ),
-+  symbolMask_(rhs.symbolMask_),
-   wordLength_( rhs.wordLength_ ),
-     //  pSeq_( rhs.pSeq_ ),// don't want 2 encoders linking to same seq
-   pState_( rhs.pState_->clone() ),
-   wordFlag_(0),
-   //  numSymbolPairs_(rhs.numSymbolPairs_),
-   //  oddNumSymbols_(rhs.oddNumSymbols_),
--  symbolMask_(rhs.symbolMask_),
-   doubleBitShift_(rhs.doubleBitShift_)
-   {
-     monitoringStream_ << "copy constructing SequenceEncoder" << endl;
-@@ -218,7 +218,7 @@
-   {
-     pTemp = (uchar*)p;
-     //    cout << basesInLast << " doing odd char at end " << *pTemp << endl;
--    encodeChar( *p, thisWord, wordFlag_, basesInLast );
-+    encodeChar( *pTemp, thisWord, wordFlag_, basesInLast );
-   }
- 
-   pSeq_->setNumBasesInLast(basesInLast);
-@@ -453,7 +453,7 @@
- 
-     for( ; i!=lastWord ; ++i )
-     {
--      if (toCarry!=~0)
-+      if (toCarry!=(Word)~0)
-       (*pCodon++) = ( ((*i)&gCursedWord)|lastWordFlag )
- 	? flaggedChar
- 	: ( toCarry | (((*i) >> (4*gCodonBits + 2*gBaseBits))&maskBase ));
-@@ -488,7 +488,7 @@
- 
-     for( ; i!=lastWord ; ++i )
-     {
--      if (toCarry!=~0)
-+      if (toCarry!=(Word)~0)
-       (*pCodon++) = ( ((*i)&gCursedWord)|lastWordFlag )
- 	? flaggedChar
- 	: ( toCarry | (((*i) >> (4*gCodonBits + gBaseBits))&mask2Bases ));
-@@ -610,7 +610,7 @@
-     do
-     {
-       i--;
--      if (toCarry!=~0)
-+      if (toCarry!=(Word)~0)
-       (*pCodon++) = ( ((*i)&gCursedWord)|lastWordFlag )
- 	? flaggedChar
- 	: ( toCarry | ( ((*i) & mask2Bases ) << gBaseBits ) );
-@@ -650,7 +650,7 @@
-     do
-     {
-       i--;
--      if (toCarry!=~0)
-+      if (toCarry!=(Word)~0)
-       (*pCodon++) = ( ((*i)&gCursedWord)|lastWordFlag )
- 	? flaggedChar
- 	: ( toCarry | ( ((*i) & maskBase ) << (2*gBaseBits) ) );
diff --git a/biology/ssaha/files/patch-SequenceReader.cpp b/biology/ssaha/files/patch-SequenceReader.cpp
deleted file mode 100644
index 356c6e8363d9..000000000000
--- a/biology/ssaha/files/patch-SequenceReader.cpp
+++ /dev/null
@@ -1,20 +0,0 @@
---- ./SequenceReader/SequenceReader.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceReader.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -179,7 +179,7 @@
- 
-   for ( ; i != reverseBuffer_.end() ; i++, j-- )
-   {
--    *i= reverseChar[ *j ];
-+    *i= reverseChar[ (int) *j ];
-     //    cout << "char: " << (int)*j << *j << " - " << (int)*i << *i << endl;
-   }
- 
-@@ -356,7 +356,7 @@
-       throw SSAHAException
- 	("Requested seq start exceeds requested seq end in SourceReaderIndex::extractSource");
-   } // ~if
--  else if (seqEnd>lastSourceSeq_.size() )
-+  else if (seqEnd>(int)lastSourceSeq_.size() )
-   {
-     cout << seqEnd << " " << lastSourceSeq_.size() << endl;
-       throw SSAHAException
diff --git a/biology/ssaha/files/patch-SequenceReader.h b/biology/ssaha/files/patch-SequenceReader.h
deleted file mode 100644
index c230fa08cbd8..000000000000
--- a/biology/ssaha/files/patch-SequenceReader.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./SequenceReader/SequenceReader.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceReader.h	2008-06-12 15:39:31.000000000 -0300
-@@ -264,6 +264,8 @@
-     pReader_( rhs.pReader_ ),
-     seqNum_( rhs.seqNum_ ) {}
- 
-+    // A virtual destructor is required because this is a base class.
-+    virtual ~SequenceReaderPrinter() {};
- 
-     SequenceReaderPrinter& operator()( SequenceNumber inSeqNum )
-     { 
diff --git a/biology/ssaha/files/patch-SequenceReaderFasta.cpp b/biology/ssaha/files/patch-SequenceReaderFasta.cpp
deleted file mode 100644
index eaf3a2a5477f..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderFasta.cpp
+++ /dev/null
@@ -1,32 +0,0 @@
---- ./SequenceReader/SequenceReaderFasta.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceReaderFasta.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -135,9 +135,9 @@
-     seqStopChar_( rhs.seqStopChar_ ),
-     pInputFileStream_( new ifstream( rhs.fileName_.c_str() ) ),
-     fileName_( rhs.fileName_.c_str() ),
--    seqPositions_( rhs.seqPositions_ ),
-     //   lastSourceSeqNum_(0),
--    pEncoder_( rhs.pEncoder_->clone() )
-+    pEncoder_( rhs.pEncoder_->clone() ),
-+    seqPositions_( rhs.seqPositions_ )
-   {
-     monitoringStream_ << "copy constructing SequenceReaderFile" << this 
- 		      << endl;
-@@ -603,7 +603,7 @@
-       throw SSAHAException
- 	("Requested seq start exceeds requested seq end in SequenceReaderFile::extractSource");
-   } // ~if
--  else if (seqEnd>lastSourceSeq_.size() )
-+  else if (seqEnd>(SequenceOffset)lastSourceSeq_.size() )
-   {
-       throw SSAHAException
- 	("Requested last byte exceeds end of seq in SequenceReaderFile::extractSource");
-@@ -628,7 +628,7 @@
-   computeNumSequencesInFile(); // ensure have scanned to end of file
-   fileFile << fileName_ << endl;
-   SeqIndexInfo* pIndex = new SeqIndexInfo[seqPositions_.size()];
--  for (int i(0) ; i < seqPositions_.size() ; i++)
-+  for (unsigned int i(0) ; i < seqPositions_.size() ; i++)
-   {
-     pIndex[i].fileNum=fileNumber;
-     pIndex[i].seqPos=seqPositions_[i];
diff --git a/biology/ssaha/files/patch-SequenceReaderFasta.h b/biology/ssaha/files/patch-SequenceReaderFasta.h
deleted file mode 100644
index a2988fbb91d8..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderFasta.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- ./SequenceReader/SequenceReaderFasta.h.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./SequenceReader/SequenceReaderFasta.h	2008-06-12 15:39:31.000000000 -0300
-@@ -55,7 +55,7 @@
- {
-  public:
-   SequenceReaderFileState( SequenceNumber lsn, std::streampos fp ) :
--  filePos_(fp),  SequenceReaderState(lsn) {}
-+  SequenceReaderState(lsn), filePos_(fp)  {}
-   // no point in making this private as it's const
-   const std::streampos filePos_;
- };
diff --git a/biology/ssaha/files/patch-SequenceReaderFilter.h b/biology/ssaha/files/patch-SequenceReaderFilter.h
deleted file mode 100644
index 38c65183fb7a..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderFilter.h
+++ /dev/null
@@ -1,20 +0,0 @@
---- ./SequenceReader/SequenceReaderFilter.h.orig	2004-03-01 13:51:30.000000000 -0300
-+++ ./SequenceReader/SequenceReaderFilter.h	2008-06-12 15:39:31.000000000 -0300
-@@ -80,7 +80,7 @@
- 
-   size_t max( void ) const 
-   { 
--    int max(0);
-+    size_t max(0);
-     for (vector<vector<string*> >::const_iterator i(bins_.begin()); i!= bins_.end(); i++ )
-       if (i->size()>max) max=i->size();
-     return max;
-@@ -109,7 +109,7 @@
-  public:
-   SequenceReaderFilterState
-     ( SequenceNumber lsn, SequenceReader* ps ) :
--    pState_(ps->saveState()), SequenceReaderState(lsn) {}
-+    SequenceReaderState(lsn), pState_(ps->saveState())  {}
-   virtual ~SequenceReaderFilterState() {} //delete pState_;
-   // no point in making this private as it's const
-   // this is state info for *ps, whatever it is
diff --git a/biology/ssaha/files/patch-SequenceReaderLocal.cpp b/biology/ssaha/files/patch-SequenceReaderLocal.cpp
deleted file mode 100644
index f8629b6ffafe..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderLocal.cpp
+++ /dev/null
@@ -1,28 +0,0 @@
---- ./SequenceReader/SequenceReaderLocal.cpp.orig	2004-03-01 13:51:30.000000000 -0300
-+++ ./SequenceReader/SequenceReaderLocal.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -46,10 +46,10 @@
-   // and seqNames_
- SequenceReaderLocal::SequenceReaderLocal
- ( SequenceReader& seqFile, int wordLength, ostream& monitoringStream ) :
--sourceData_( seqFile.getSourceDataType() ),
-+SequenceReader( monitoringStream ),
- wordLength_( wordLength ),
- bitsPerSymbol_( seqFile.getBitsPerSymbol() ),
--SequenceReader( monitoringStream )
-+sourceData_( seqFile.getSourceDataType() )
- {
-   monitoringStream_ 
-     << "constructing SequenceReaderLocal from SequenceReader" << endl;
-@@ -72,10 +72,10 @@
- 
- SequenceReaderLocal::SequenceReaderLocal
- ( int wordLength, int bitsPerSymbol, ostream& monitoringStream ) :
--sourceData_( gUnknownData ),
-+SequenceReader( monitoringStream ),
- wordLength_( wordLength ),
- bitsPerSymbol_( bitsPerSymbol ),
--SequenceReader( monitoringStream )
-+sourceData_( gUnknownData )
- {
-   monitoringStream_ 
-     << "constructing empty SequenceReaderLocal" << endl;
diff --git a/biology/ssaha/files/patch-SequenceReaderMulti.cpp b/biology/ssaha/files/patch-SequenceReaderMulti.cpp
deleted file mode 100644
index 1e160249d180..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderMulti.cpp
+++ /dev/null
@@ -1,30 +0,0 @@
---- ./SequenceReader/SequenceReaderMulti.cpp.orig	2004-03-01 13:51:30.000000000 -0300
-+++ ./SequenceReader/SequenceReaderMulti.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -166,7 +166,7 @@
-   {
-     if (thisReader_->allSeqsRead_)
-     {
--      if ( currentSeqNum_ <= thisReader_->size_ )
-+      if ( currentSeqNum_ <= (SequenceNumber)thisReader_->size_ )
-       {
- 	//	assert( thisReader_->ptr_->findSequence( currentSeqNum_ ) == true );
- 	lastSequenceNumber_ = --seqNum; // last read = 1 behind current
-@@ -240,7 +240,7 @@
-     for ( vector<SeqReaderInfo>::iterator i = allReaders_.begin(); 
-           i != allReaders_.end(); i++ )
-     {
--      if ( seqNum <= i->size_ ) { thisReader_ = i; break; } // %%%%%
-+      if ( seqNum <= (SequenceNumber)i->size_ ) { thisReader_ = i; break; } // %%%%%
-       seqNum -= i->size_;
-     } // ~for i
- 
-@@ -276,7 +276,8 @@
-   {
-     DEBUG_L2( "SequenceReaderMulti::getNextSequence" );
- 
--    int numInLast;
-+    int numInLast = -1;  // Initialized to avoid -Wall possibly used before initialized warning.
-+                         // The algorithm should be checked carefully.
- 
-     while 
-       (    ( thisReader_ 
diff --git a/biology/ssaha/files/patch-SequenceReaderMulti.h b/biology/ssaha/files/patch-SequenceReaderMulti.h
deleted file mode 100644
index 72f079f97add..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderMulti.h
+++ /dev/null
@@ -1,13 +0,0 @@
---- ./SequenceReader/SequenceReaderMulti.h.orig	2004-03-01 13:51:30.000000000 -0300
-+++ ./SequenceReader/SequenceReaderMulti.h	2008-06-12 15:39:31.000000000 -0300
-@@ -81,8 +81,9 @@
-     ( SequenceNumber lsn, 
-       vector<SeqReaderInfo>::iterator tr,
-       SequenceReaderState* ps ) :
-+  SequenceReaderState(lsn),
-   thisReader_(tr),  
--    pState_(ps), SequenceReaderState(lsn) {}
-+  pState_(ps)  {}
-   virtual ~SequenceReaderMultiState() {} //delete pState_;
-   // no point in making this private as it's const
-   const vector<SeqReaderInfo>::iterator thisReader_;
diff --git a/biology/ssaha/files/patch-SequenceReaderString.h b/biology/ssaha/files/patch-SequenceReaderString.h
deleted file mode 100644
index a35c0b7cfc01..000000000000
--- a/biology/ssaha/files/patch-SequenceReaderString.h
+++ /dev/null
@@ -1,26 +0,0 @@
---- ./SequenceReader/SequenceReaderString.h.orig	2004-03-01 13:51:30.000000000 -0300
-+++ ./SequenceReader/SequenceReaderString.h	2008-06-12 15:39:31.000000000 -0300
-@@ -65,9 +65,9 @@
-   // NB SequenceReaderStringBase takes ownership of *pEncoder
-   SequenceEncoder* pEncoder,
-   ostream& monitoringStream = cerr ) :
-+  SequenceReader( monitoringStream ),
-   sequenceString_( sequenceString ), 
--  pEncoder_( pEncoder ),
--  SequenceReader( monitoringStream )
-+  pEncoder_( pEncoder )
- {
-   monitoringStream_ << "constructing SequenceReaderStringBase" << endl;
- } // constructor
-@@ -78,9 +78,9 @@
-   // TYPE  NAME  IN/OUT COMMENT
-   // Returns: TYPE COMMENT
- SequenceReaderStringBase( const SequenceReaderStringBase& rhs ) :
-+SequenceReader( rhs.monitoringStream_ ),
- sequenceString_( rhs.sequenceString_ ), 
--pEncoder_( rhs.pEncoder_->clone() ),
--SequenceReader( rhs.monitoringStream_ )
-+pEncoder_( rhs.pEncoder_->clone() )
- {
-   monitoringStream_ << "copy constructing SequenceReaderStringBase" << endl;
- } // copy constructor
diff --git a/biology/ssaha/files/patch-makefile b/biology/ssaha/files/patch-makefile
deleted file mode 100644
index cc9cf1a7d330..000000000000
--- a/biology/ssaha/files/patch-makefile
+++ /dev/null
@@ -1,30 +0,0 @@
---- ./Binary/makefile.orig	2008-06-12 16:00:19.000000000 -0300
-+++ ./Binary/makefile	2008-06-12 16:00:43.000000000 -0300
-@@ -11,10 +11,10 @@
- # copy of the SSAHA directory structure you should be able to make files
- # straight away.
- # 
--# SSAHA_TOP_DIR=$(SSAHA_DIR?$(SSAHA_DIR):$(PWD)/../)
-+SSAHA_TOP_DIR=$(PWD)/../
- # Above is a nice idea, but syntax doesn't work for all versions of make
- # so must define CURRENT_SSAHA_VERSION, eg in your .cshrc file - TC 14.3.01
--SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
-+# SSAHA_TOP_DIR=$(CURRENT_SSAHA_VERSION)
- 
- GLOBAL_DIR=${SSAHA_TOP_DIR}/Global
- SEQ_DIR=${SSAHA_TOP_DIR}/SequenceReader
-@@ -22,12 +22,12 @@
- QUERY_DIR=${SSAHA_TOP_DIR}/QueryManager
- EXEC_DIR=${SSAHA_TOP_DIR}/Executables
- 
--CCC = g++
-+CCC ?= g++
- # !!!! change -g to -O3 before making deliverable %%%%
- # NB use -ggdb to get gdb to work
- INCLUDE_PATHS = -I${SSAHA_TOP_DIR} \
- 	-I${GLOBAL_DIR} -I${SEQ_DIR} -I${HASH_DIR} -I${QUERY_DIR}
--OPTIM = -O3
-+OPTIM ?= -O3
- DEBUG_LEVEL = 
- # DEBUG_LEVEL = -DEBUG_LEVEL1
- # -D_REENTRANT necessary for thread safety - see pthread man page - TC 24.9.1
diff --git a/biology/ssaha/files/patch-testHashTableNoOverlap.cpp b/biology/ssaha/files/patch-testHashTableNoOverlap.cpp
deleted file mode 100644
index 721e03ae9134..000000000000
--- a/biology/ssaha/files/patch-testHashTableNoOverlap.cpp
+++ /dev/null
@@ -1,178 +0,0 @@
---- ./HashTable/testHashTableNoOverlap.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./HashTable/testHashTableNoOverlap.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -70,10 +70,10 @@
-   cout << "     Test of class HashTable" << endl << endl;
-   cout << "*******************************************" << endl << endl;
- 
--  int numSeqs = 10;
--  int seqSize = 100;
--  int wordLength = 10;
--  int maxHits = 50;
-+  unsigned int numSeqs = 10;
-+  unsigned int seqSize = 100;
-+  unsigned int wordLength = 10;
-+  unsigned int maxHits = 50;
- 
-   // Generate a random sequence of (numSeqs*seqSize) base pairs ...
-   // 1128 is the seed value for the random number generator
-@@ -116,7 +116,7 @@
-   // so we are checking that all sequence data 'finds itself' in the hash
-   // table in the correct position
- 
--  for ( int i(1) ; i <= numSeqs ; i++ )
-+  for ( unsigned int i(1) ; i <= numSeqs ; i++ )
-   { // for each sequence in testReader ...
-     testReader.getNextSequence(seq,wordLength);
- 
-@@ -131,7 +131,7 @@
-     cout << seq.getNumBasesInLast() << "!!\n";
-     // ... go through the Words in the sequence one by one and look
-     //    for matches in the hash table
--    for ( int j(0) ; j < (seqSize/wordLength) ; j++ )
-+    for ( unsigned int j(0) ; j < (seqSize/wordLength) ; j++ )
-     {
-        cout << j << " " << printBase(seq[j],wordLength) << endl; 
-       
-@@ -146,7 +146,7 @@
-        // ... and that the sequence number and offset for the hit are OK
- 
-        assert(hits[0].subjectNum == i );
--       assert(hits[0].diff == j*wordLength );
-+       assert((unsigned int)hits[0].diff == j*wordLength );
-        assert(hits[0].queryPos == 1);
-  
-        hits.clear();
-@@ -157,12 +157,12 @@
-     testHash.matchWord(seq,hits); 
-     cout << hits.size() << "!!!!!\n";
-     assert( hits.size() == (seqSize/wordLength) );
--    for ( int j(0) ; j < hits.size() ; j ++ )
-+    for ( unsigned int j(0) ; j < hits.size() ; j ++ )
-     {
- 
-       assert(hits[j].subjectNum == i);
-       assert(hits[j].diff   == 0);
--      assert(hits[j].queryPos == 1 + ( j * wordLength ) );
-+      assert((unsigned int)hits[j].queryPos == 1 + ( j * wordLength ) );
-      
-     } // ~for j
- 
-@@ -194,7 +194,7 @@
-   assert( testLoad.isInitialized() == true );
-   
-   // and that word length matches original
--  assert( testLoad.getWordLength() == wordLength );
-+  assert( (unsigned int)testLoad.getWordLength() == wordLength );
- 
-   testLoad.setMaxNumHits( testHash.getMaxNumHits() );
- 
-@@ -208,7 +208,7 @@
-   // and new hash tables, storing the resulting hits in hitsOrig and
-   // hitsCopy respectively.
- 
--  for ( int i(0) ; i < numSeqs ; i++ )
-+  for ( unsigned int i(0) ; i < numSeqs ; i++ )
-   {
- 
-     // ... check that the name strings match 
-@@ -258,7 +258,7 @@
-   HashTable   shiftHash(cout);
-   creator.createHashTable(shiftHash,shiftReader,wordLength,maxHits);
- 
--  for ( int i(0) ; i < wordLength ; i++ )
-+  for ( unsigned int i(0) ; i < wordLength ; i++ )
-   {
-     testSeq = testSeq.substr(1); // delete first character
-     { // braces ensure a new instance is created each time round loop
-@@ -460,7 +460,7 @@
-     SequenceEncoderCodon encoder;
-     encoder.setWordLength(wordLength);
- 
--    for ( int i(1) ; i < hashTrans.getNumSequences() ; i++ )
-+    for ( unsigned int i(1) ; i < hashTrans.getNumSequences() ; i++ )
-     {
- 
-       hashTrans.getSequenceName( s1, i );
-@@ -477,7 +477,7 @@
-       assert(hashTrans.getSequenceSize(i)==hashTrans2.getSequenceSize(i));
- 
-       assert( (((w1.size()-1) * gMaxBasesPerWord ) + w1.getNumBasesInLast())
--	      == hashTrans.getSequenceSize(i));
-+	      == (unsigned int)hashTrans.getSequenceSize(i));
- 
- 
-       // Sequence should produce same (nonzero) num hits in fwd direction
-@@ -573,19 +573,19 @@
-     string s, s1;
-     Word w;
-     vector<Word> subs;
--    int wl=15;
-+    unsigned int wl=15;
- 
-     // test substitution for DNA
-     // 
- 
--    for (int i(0); i<wl; i++) s+="A";
-+    for ( unsigned int i(0); i<wl; i++) s+="A";
- 
-     w = makeBase(s);
- 
-     generateSubstitutesDNA( w, subs, wl );
-     assert(subs.size()==wl);
-     
--    for (int i(0); i<wl ; i++)
-+    for (unsigned int i(0); i<wl ; i++)
-     {
-       cout << printWord(subs[i],wl) << endl;
-       s1=s;
-@@ -596,14 +596,14 @@
-     //
-     s=""; subs.clear();
- 
--    for (int i(0); i<wl; i++) s+="C";
-+    for (unsigned int i(0); i<wl; i++) s+="C";
- 
-     w = makeBase(s);
- 
-     generateSubstitutesDNA( w, subs, wl );
-     assert(subs.size()==wl);
-     
--    for (int i(0); i<wl ; i++)
-+    for (unsigned int i(0); i<wl ; i++)
-     {
-       cout << printWord(subs[i],wl) << endl;
-       s1=s;
-@@ -614,14 +614,14 @@
-     //
-     s=""; subs.clear();
- 
--    for (int i(0); i<wl; i++) s+="G";
-+    for (unsigned int i(0); i<wl; i++) s+="G";
- 
-     w = makeBase(s);
- 
-     generateSubstitutesDNA( w, subs, wl );
-     assert(subs.size()==wl);
-     
--    for (int i(0); i<wl ; i++)
-+    for (unsigned int i(0); i<wl ; i++)
-     {
-       cout << printWord(subs[i],wl) << endl;
-       s1=s;
-@@ -632,14 +632,14 @@
-     //
-     s=""; subs.clear();
- 
--    for (int i(0); i<wl; i++) s+="T";
-+    for (unsigned int i(0); i<wl; i++) s+="T";
- 
-     w = makeBase(s);
- 
-     generateSubstitutesDNA( w, subs, wl );
-     assert(subs.size()==wl);
-     
--    for (int i(0); i<wl ; i++)
-+    for (unsigned int i(0); i<wl ; i++)
-     {
-       cout << printWord(subs[i],wl) << endl;
-       s1=s;
diff --git a/biology/ssaha/files/patch-testQueryManager.cpp b/biology/ssaha/files/patch-testQueryManager.cpp
deleted file mode 100644
index 19f1ec879fd5..000000000000
--- a/biology/ssaha/files/patch-testQueryManager.cpp
+++ /dev/null
@@ -1,20 +0,0 @@
---- ./QueryManager/testQueryManager.cpp.orig	2004-03-01 13:51:29.000000000 -0300
-+++ ./QueryManager/testQueryManager.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -53,7 +53,7 @@
- void reverseString( string& seq )
- {
-   string rc;
--  for ( int i(0) ; i < seq.size() ; i++ )
-+  for ( unsigned int i(0) ; i < seq.size() ; i++ )
-   {
-     if  ( ( seq[i] == 'A' ) || (seq[i] == 'a') ) rc = 'T' + rc; 
-     else if ( ( seq[i] == 'T' ) || (seq[i] == 't') ) rc = 'A' + rc; 
-@@ -165,7 +165,7 @@
-   int numSeqs = 3;
-   int seqSize = 1000;
-   int wordLength = 7;
--  int maxHits = 50;
-+//  int maxHits = 50;
- 
-   // Generate a random sequence of (numSeqs*seqSize) base pairs ...
-   // 1128 is the seed value for the random number generator
diff --git a/biology/ssaha/files/patch-testSequenceReaderFasta.cpp b/biology/ssaha/files/patch-testSequenceReaderFasta.cpp
deleted file mode 100644
index 3bc005bff32b..000000000000
--- a/biology/ssaha/files/patch-testSequenceReaderFasta.cpp
+++ /dev/null
@@ -1,171 +0,0 @@
---- ./SequenceReader/testSequenceReaderFasta.cpp.orig	2004-08-25 11:31:17.000000000 -0300
-+++ ./SequenceReader/testSequenceReaderFasta.cpp	2008-06-12 15:39:31.000000000 -0300
-@@ -49,12 +49,12 @@
- // ### Function Definitions ###
- void capitalise( string& s )
- {
--  for ( int i(0) ; i < s.size() ; ++i ) s[i] = toupper(s[i]);
-+  for ( unsigned int i(0) ; i < s.size() ; ++i ) s[i] = toupper(s[i]);
- }
- void reverseString( string& seq )
- {
-   string rc;
--  for ( int i(0) ; i < seq.size() ; i++ )
-+  for ( unsigned int i(0) ; i < seq.size() ; i++ )
-   {
-     if  ( ( seq[i] == 'A' ) || (seq[i] == 'a') ) rc = 'T' + rc; 
-     else if ( ( seq[i] == 'T' ) || (seq[i] == 't') ) rc = 'A' + rc; 
-@@ -91,7 +91,7 @@
-   cout << "Test " << ++numTests <<": test of function getNextSequence" 
-        << endl << endl;
- 
--  int numSeqs = 10;
-+  unsigned int numSeqs = 10;
-   int seqSize = 57;
- 
-   // Generate a random sequence of (numSeqs*seqSize) base pairs ...
-@@ -118,7 +118,7 @@
- 
- 
- 
--  for ( int i(0) ; i < numSeqs ; i++ )
-+  for ( unsigned int i(0) ; i < numSeqs ; i++ )
-   {
-   
-     testReader.getNextSequence(w,wordLength);
-@@ -188,7 +188,7 @@
-   cout << "Test " << ++numTests <<": test of getSequence" 
-        << endl << endl;
- 
--    int toRead = 5;
-+    unsigned int toRead = 5;
- 
-     w.clear();
-     testReader.getSequence(w,toRead,wordLength);
-@@ -242,7 +242,7 @@
-     cout << "Test " << ++numTests <<": test of random access output functions" 
-        << endl << endl;
- 
--    for ( int i(1) ; i <= numSeqs; i++ )
-+    for ( unsigned int i(1) ; i <= numSeqs; i++ )
-     {
-       cout << testReader.getName(i) << endl;
-       cout << testReader.getSideInfo(i) << endl;
-@@ -275,7 +275,7 @@
-   // add on the end of the expected sequence string for it to match actual.
-   //  const string spareBases( wordLength - ( seqSize % wordLength ), 'A');
- 
--  for ( int i(0) ; i < numSeqs ; i++ )
-+  for ( unsigned int i(0) ; i < numSeqs ; i++ )
-   {
-   
-     testReaderFastq.getNextSequence(w,wordLength);
-@@ -403,7 +403,7 @@
-     cout << "Test " << ++numTests <<": test of random access output functions" 
-        << endl << endl;
- 
--    for ( int i(1) ; i <= numSeqs; i++ )
-+    for ( unsigned int i(1) ; i <= numSeqs; i++ )
-     {
-       cout << testReaderFastq.getName(i) << endl;
-       cout << testReaderFastq.getSideInfo(i) << endl;
-@@ -466,7 +466,7 @@
-     {
- 
-       testReader.rewind();
--      for ( int j(0) ; j < testReader.getNumSequencesInFile() ; j ++ ) 
-+      for ( unsigned int j(0) ; j < testReader.getNumSequencesInFile() ; j ++ ) 
-       {
- 		cout << i << " " << j << endl;
-         wSingle.clear(); wMulti.clear(); 
-@@ -772,7 +772,7 @@
-       
-       for (int wordLength(9); wordLength <= 12; wordLength++)
-       {
--	for (int i(0) ; i < fiftyAs.size(); i++)
-+	for (unsigned int i(0) ; i < fiftyAs.size(); i++)
- 	{
- 	  thisString=fiftyAs;
- 	  thisString[i]='X';
-@@ -793,7 +793,7 @@
- 	  stringReader.changeMode(&ignore);
- 	  w.clear();
- 	  numInLast = stringReader.getNextSequence(w,wordLength);
--	  assert(numInLast==(fiftyAs.size()-1)%wordLength);
-+	  assert(numInLast==(int)(fiftyAs.size()-1)%wordLength);
- 	  assert((w.size()-1)*wordLength+numInLast==fiftyAs.size()-1);
- 
- 	  for (WordSequence::iterator j(w.begin()); j!=w.end();j++)
-@@ -810,7 +810,7 @@
- 	  numInLast = stringReader.getNextSequence(w,wordLength);
- 	  cout << "blegh " << wordLength << " " << i  << " " << fiftyAs.size() << " " << numInLast << " " << w.size() << endl;
- 	  
--	  assert(numInLast==fiftyAs.size()%wordLength);
-+	  assert(numInLast==(int)fiftyAs.size()%wordLength);
- 	  assert((w.size()-1)*wordLength+numInLast==fiftyAs.size());
- 
- 	  for (WordSequence::iterator j(w.begin()); j!=w.end();j++)
-@@ -828,7 +828,7 @@
- 	  stringReader.changeMode(&tag);
- 	  w.clear();
- 	  numInLast = stringReader.getNextSequence(w,wordLength);
--	  assert(numInLast==fiftyAs.size()%wordLength);
-+	  assert(numInLast==(int)fiftyAs.size()%wordLength);
- 	  assert((w.size()-1)*wordLength+numInLast==fiftyAs.size());
- 
- 	  for (WordSequence::iterator j(w.begin()); j!=w.end();j++)
-@@ -915,7 +915,7 @@
-       cout << "actual:   " << printResidue(W,wordLength) << endl;
-       
- 
--      for ( int i(0),j(0);  i < protString.size() ; i+=wordLength,j++ )
-+      for ( unsigned int i(0),j(0);  i < protString.size() ; i+=wordLength,j++ )
- 	{
- 	  wordString = protString.substr(i, wordLength);
- 	  cout << wordString << " " << printResidue(W[j],wordLength) << endl;
-@@ -1163,7 +1163,7 @@
-           assert (    localReader.getNumSequencesInFile()
-                ==  testReader.getNumSequencesInFile() );
- 
--            for ( int j(0) ; j < testReader.getNumSequencesInFile() ; j ++ ) 
-+            for ( unsigned int j(0) ; j < testReader.getNumSequencesInFile() ; j ++ ) 
-         {
-           wSingle.clear(); wMulti.clear(); 
- 
-@@ -1244,7 +1244,7 @@
-      WordSequence seq;
-      string name;
- 
--     for ( int i(1) ; i <= filterer.getNumSequencesInFile() ; i++ )
-+     for ( unsigned int i(1) ; i <= filterer.getNumSequencesInFile() ; i++ )
-      {
-        filterer.getSequence(seq, i, 16);
-        filterer.getLastSequenceName(name);
-@@ -1330,12 +1330,12 @@
-        //       assert(v1==v1i);
-        //     assert(v2==v2i);
- 
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v1[i-j]==data[i-1]);
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v2[i-j]==data[i-1]);
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v1m[i-j]==data[i-1]);
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v2m[i-j]==data[i-1]);
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v1i[i-j]==data[i-1]);
--       for ( int (i(j)) ; i <=seqSize ; i++ ) assert(v2i[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v1[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v2[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v1m[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v2m[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v1i[i-j]==data[i-1]);
-+       for ( int i(j) ; i <=seqSize ; i++ ) assert(v2i[i-j]==data[i-1]);
- 
-      }
-      cout << "got through  first bit" << endl;
-@@ -1402,7 +1402,7 @@
- 
-      string n1,n2;
- 
--     for (int i(0);i<numSeqs; i++)
-+     for (unsigned int i(0);i<(unsigned int)numSeqs; i++)
-      {
-        cout << "i: " << i << endl;
-        w1.clear(); w2.clear();
diff --git a/biology/ssaha/pkg-descr b/biology/ssaha/pkg-descr
deleted file mode 100644
index 2a683e6cda7d..000000000000
--- a/biology/ssaha/pkg-descr
+++ /dev/null
@@ -1,11 +0,0 @@
-SSAHA is a software tool for very fast matching and alignment of DNA
-sequences. It stands for Sequence Search and Alignment by Hashing
-Algorithm. It achieves its fast search speed by converting sequence
-information into a `hash table' data structure, which can then be
-searched very rapidly for matches.
-
-SSAHA: a fast search method for large DNA databases (2001).
-Ning Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
-PMID: 11591649
-
-WWW: http://www.sanger.ac.uk/resources/software/ssaha/
diff --git a/cad/Makefile b/cad/Makefile
index e56df5115311..7d7828ef334b 100644
--- a/cad/Makefile
+++ b/cad/Makefile
@@ -18,7 +18,6 @@
     SUBDIR += calculix-ccx
     SUBDIR += cascade
     SUBDIR += chipvault
-    SUBDIR += cider
     SUBDIR += cura-engine
     SUBDIR += dinotrace
     SUBDIR += dxf2fig
@@ -84,7 +83,6 @@
     SUBDIR += qucs
     SUBDIR += repsnapper
     SUBDIR += rubygem-gdsii
-    SUBDIR += sceptre
     SUBDIR += scotch
     SUBDIR += solvespace
     SUBDIR += sp2sp
diff --git a/cad/cider/Makefile b/cad/cider/Makefile
deleted file mode 100644
index ac84228dba91..000000000000
--- a/cad/cider/Makefile
+++ /dev/null
@@ -1,85 +0,0 @@
-# Created by: AMAKAWA Shuhei <amakawa@jp.FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	cider
-PORTVERSION=	1.b1
-PORTREVISION=	8
-CATEGORIES=	cad
-MASTER_SITES=	LOCAL/mita
-DISTNAME=	cider1b1
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Mixed-level circuit and device simulator (includes SPICE3)
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-BROKEN_aarch64=		fails to link: missing sbrk
-BROKEN_powerpc64=	fails to compile: ccache: cc: FreeBSD: No such file or directory
-
-CONFLICTS=	spice-[0-9]*
-WRKSRC=		${WRKDIR}/sim
-USE_XORG=	xt xaw xmu
-
-OPTIONS_DEFINE=	EXAMPLES
-
-CFLAGS+=	-Wno-return-type
-
-pre-patch:
-	@${CP} -f ${WRKSRC}/spice/common/lib/helpdir/spice.txt \
-		${WRKSRC}/cider/common/lib/helpdir/spice.txt
-
-post-patch:
-	@${LN} -fs ../../../spice/common/util/makelib.sh \
-		${WRKSRC}/cider/common/util
-	@${LN} -fs ../../../../spice/common/src/lib/sparse/spdefs.h \
-		${WRKSRC}/cider/common/src/include
-	@${CP} -f ${FILESDIR}/Makefile.spice ${WRKSRC}/spice/common/Makefile
-	@${CP} -f ${FILESDIR}/Makefile.cider ${WRKSRC}/cider/common/Makefile
-	@${CP} -f ${FILESDIR}/FreeBSD ${WRKSRC}/spice/common/conf
-	@${CP} -f ${FILESDIR}/FreeBSD ${WRKSRC}/cider/common/conf
-
-do-build:
-	@(cd ${WRKSRC}/spice/common && ${SETENV} ${MAKE_ENV} ${MAKE_CMD}) && \
-	    (cd ${WRKSRC}/cider/common && ${SETENV} ${MAKE_ENV} ${MAKE_CMD})
-
-do-install:
-	@${MKDIR} ${STAGEDIR}${DATADIR}/spice3/helpdir \
-		${STAGEDIR}${DATADIR}/spice3/scripts \
-		${STAGEDIR}${DATADIR}/cider/helpdir \
-		${STAGEDIR}${DATADIR}/cider/scripts
-	${INSTALL_PROGRAM} ${WRKSRC}/cider/FreeBSD/obj/bin/cider \
-		${STAGEDIR}${PREFIX}/bin
-	${INSTALL_MAN} ${WRKSRC}/cider/common/doc/cider.1 \
-		${STAGEDIR}${MANPREFIX}/man/man1
-	${INSTALL_DATA} ${WRKSRC}/cider/common/lib/helpdir/*.txt \
-		${STAGEDIR}${DATADIR}/cider/helpdir
-	${INSTALL_SCRIPT} ${WRKSRC}/cider/common/lib/scripts/dev* \
-		${STAGEDIR}${DATADIR}/cider/scripts
-	(cd ${WRKSRC}/spice/FreeBSD/obj/bin && ${INSTALL_PROGRAM} \
-		spice3 nutmeg sconvert help proc2mod multidec \
-		${STAGEDIR}${PREFIX}/bin)
-	(cd ${WRKSRC}/spice/common/man/man1 && ${INSTALL_MAN} nutmeg.1 \
-		sconvert.1 spice.1 ${STAGEDIR}${MANPREFIX}/man/man1)
-	(cd ${STAGEDIR}${MANPREFIX}/man/man1 && \
-		${LN} -s spice.1 spice3.1)
-	${INSTALL_MAN} ${WRKSRC}/spice/common/man/man3/mfb.3 \
-		${STAGEDIR}${MANPREFIX}/man/man3
-	${INSTALL_MAN} ${WRKSRC}/spice/common/man/man5/mfbcap.5 \
-		${STAGEDIR}${MANPREFIX}/man/man5
-	${INSTALL_DATA} ${WRKSRC}/spice/common/lib/helpdir/spice.txt \
-		${STAGEDIR}${DATADIR}/spice3/helpdir
-	(cd ${WRKSRC}/spice/common/lib && ${INSTALL_DATA} news mfbcap \
-		${STAGEDIR}${DATADIR}/spice3)
-	${INSTALL_SCRIPT} ${WRKSRC}/spice/common/lib/scripts/s* \
-		${STAGEDIR}${DATADIR}/spice3/scripts
-	${INSTALL_SCRIPT} ${WRKSRC}/spice/common/lib/scripts/spinit \
-		${STAGEDIR}${DATADIR}/cider/scripts
-do-install-EXAMPLES-on:
-	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/spice3
-	${INSTALL_DATA} ${WRKSRC}/spice/common/examples/*.cir \
-		${STAGEDIR}${EXAMPLESDIR}/spice3
-	cd ${WRKSRC}/cider/common/examples && \
-		${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}
-
-.include <bsd.port.mk>
diff --git a/cad/cider/distinfo b/cad/cider/distinfo
deleted file mode 100644
index fe2075a37e21..000000000000
--- a/cad/cider/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (cider1b1.tar.gz) = 85e8a616bdc1001d763457b16bb2d2fb1dcad1933d892ddd2b419f088f2f514a
-SIZE (cider1b1.tar.gz) = 1821055
diff --git a/cad/cider/files/FreeBSD b/cad/cider/files/FreeBSD
deleted file mode 100644
index 340d05383b42..000000000000
--- a/cad/cider/files/FreeBSD
+++ /dev/null
@@ -1,10 +0,0 @@
-# FreeBSD config exception file
-
-MAKE		= /usr/bin/make
-INTERFACE_OPTS  = -DWANT_X11
-CC_OPT          = $(CFLAGS)
-#CC_OPT_SAFE     = $(CFLAGS) -fno-strength-reduce
-X_DIR		= $(LOCALBASE)
-LDFLAGS		= -L$(LOCALBASE)/lib -lm -ltermcap
-ASM_HACK	= < /dev/null
-SYS_CFLAGS	= -Dbsd
diff --git a/cad/cider/files/Makefile.cider b/cad/cider/files/Makefile.cider
deleted file mode 100644
index 828c8dd37415..000000000000
--- a/cad/cider/files/Makefile.cider
+++ /dev/null
@@ -1,11 +0,0 @@
-all:
-	env CC=${CC} ./util/build FreeBSD
-
-install:
-	./util/build FreeBSD install 
-	chmod ${BINMODE} ${PREFIX}/bin/cider
-	strip ${PREFIX}/bin/cider
-	chmod -R a+rX ${PREFIX}/share/cider
-	${BSD_INSTALL_MAN} doc/cider.1 ${PREFIX}/man/man1
-
-.include <bsd.own.mk>
diff --git a/cad/cider/files/Makefile.spice b/cad/cider/files/Makefile.spice
deleted file mode 100644
index eefca7821762..000000000000
--- a/cad/cider/files/Makefile.spice
+++ /dev/null
@@ -1,19 +0,0 @@
-all:
-	env CC=${CC} ./util/build FreeBSD default
-
-install:
-	./util/build FreeBSD install 
-	chmod ${BINMODE} ${PREFIX}/bin/spice3 ${PREFIX}/bin/nutmeg \
-	  ${PREFIX}/bin/sconvert ${PREFIX}/bin/help	\
-	  ${PREFIX}/bin/proc2mod ${PREFIX}/bin/multidec
-	strip ${PREFIX}/bin/spice3 ${PREFIX}/bin/nutmeg	\
-	  ${PREFIX}/bin/sconvert ${PREFIX}/bin/help \
-	  ${PREFIX}/bin/proc2mod ${PREFIX}/bin/multidec
-	chmod -R a+rX ${PREFIX}/share/spice3
-	${BSD_INSTALL_MAN} man/man5/mfbcap.5 ${PREFIX}/man/man5
-	${BSD_INSTALL_MAN} man/man1/sconvert.1 ${PREFIX}/man/man1
-	${BSD_INSTALL_MAN} man/man1/nutmeg.1 ${PREFIX}/man/man1
-	${BSD_INSTALL_MAN} man/man1/spice.1 ${PREFIX}/man/man1
-	${BSD_INSTALL_MAN} man/man3/mfb.3 ${PREFIX}/man/man3
-
-.include <bsd.own.mk>
diff --git a/cad/cider/files/patch-cider1b1_common_conf_defaults b/cad/cider/files/patch-cider1b1_common_conf_defaults
deleted file mode 100644
index 52499018bef4..000000000000
--- a/cad/cider/files/patch-cider1b1_common_conf_defaults
+++ /dev/null
@@ -1,26 +0,0 @@
---- cider1b1/common/conf/defaults.orig	1994-01-29 19:21:15 UTC
-+++ cider1b1/common/conf/defaults
-@@ -99,17 +99,17 @@ OBJ_TOP		= $(SYS_DIR)/obj
- #	identified as and SYSTEM is the name of the per-system definitions
- #	file listed in the "build" command.
- 
--SIM_DIR		= $(TOP2)
--SPICE_DIR	= $(SIM_DIR)/spice/$(SYSTEM)
--CIDER_DIR	= $(SIM_DIR)/cider/$(SYSTEM)
--SPICE_LIB_DIR	= $(SPICE_DIR)/lib
--CIDER_LIB_DIR	= $(SPICE_DIR)/lib
-+SIM_DIR		= ${PREFIX}
-+SPICE_DIR	= $(SIM_DIR)
-+CIDER_DIR	= $(SIM_DIR)
-+SPICE_LIB_DIR	= $(SPICE_DIR)/share/spice3
-+CIDER_LIB_DIR	= $(SPICE_DIR)/share/cider
- SPICE_EXEC_DIR	= $(SPICE_DIR)/bin
- CIDER_EXEC_DIR	= $(CIDER_DIR)/bin
- 
- S_CIDER_DIR	= $(CIDER_DIR)
- S_SPICE_DIR	= $(SPICE_DIR)
--S_CIDER_LIB_DIR	= $(S_SPICE_DIR)/lib
-+S_CIDER_LIB_DIR	= $(S_SPICE_DIR)/share/cider
- S_CIDER_EXEC_DIR= $(S_CIDER_DIR)/bin
- 
- #	INSTALL_DIRS lists the directories that need to be created before
diff --git a/cad/cider/files/patch-cider1b1_common_lib_helpdir_spice.txt b/cad/cider/files/patch-cider1b1_common_lib_helpdir_spice.txt
deleted file mode 100644
index d8cfab61e6d6..000000000000
--- a/cad/cider/files/patch-cider1b1_common_lib_helpdir_spice.txt
+++ /dev/null
@@ -1,18 +0,0 @@
---- cider1b1/common/lib/helpdir/spice.txt.orig	2014-08-18 09:55:34 UTC
-+++ cider1b1/common/lib/helpdir/spice.txt
-@@ -7,6 +7,7 @@ TEXT: H
- TEXT: H
- TEXT: H
- TEXT: H
-+SUBTOPIC: CIDER:cider
- SUBTOPIC: SPICE:INTRODUCTION
- SUBTOPIC: SPICE:CIRCUIT DESCRIPTION
- SUBTOPIC: SPICE:CIRCUIT ELEMENTS AND MODELS
-@@ -15,6 +16,7 @@ SUBTOPIC: SPICE:INTERACTIVE INTERPRETER
- SUBTOPIC: SPICE:BIBLIOGRAPHY
- SUBTOPIC: SPICE:APPENDIX A
- SUBTOPIC: SPICE:APPENDIX B
-+SUBJECT: cider
- SUBJECT: INTRODUCTION
- TITLE: INTRODUCTION
- TEXT: H
diff --git a/cad/cider/files/patch-cider1b1_common_lib_makedefs b/cad/cider/files/patch-cider1b1_common_lib_makedefs
deleted file mode 100644
index 506ea08b4f4d..000000000000
--- a/cad/cider/files/patch-cider1b1_common_lib_makedefs
+++ /dev/null
@@ -1,16 +0,0 @@
---- cider1b1/common/lib/makedefs.orig	1994-02-24 09:11:21 UTC
-+++ cider1b1/common/lib/makedefs
-@@ -1,9 +1,12 @@
- 
- INSTALL_TARGETS	= $(CIDER_LIB_DIR)/helpdir/cider.txt			      \
- 		  $(CIDER_LIB_DIR)/helpdir/cider.idx	\
-+		  $(CIDER_LIB_DIR)/helpdir/spice.txt	\
-+		  $(CIDER_LIB_DIR)/helpdir/spice.idx	\
- 		  $(CIDER_LIB_DIR)/scripts/devaxis	\
- 		  $(CIDER_LIB_DIR)/scripts/devload
- 
--ALL_INSTALL_DIRS = $(CIDER_LIB_DIR) $(CIDER_LIB_DIR)/helpdir
-+ALL_INSTALL_DIRS = $(CIDER_LIB_DIR) $(CIDER_LIB_DIR)/helpdir \
-+		   $(CIDER_LIB_DIR)/scripts
- 
- INSTALL_SPECIAL = directories
diff --git a/cad/cider/files/patch-cider1b1_common_lib_makeops b/cad/cider/files/patch-cider1b1_common_lib_makeops
deleted file mode 100644
index 6672ea21f77e..000000000000
--- a/cad/cider/files/patch-cider1b1_common_lib_makeops
+++ /dev/null
@@ -1,16 +0,0 @@
---- cider1b1/common/lib/makeops.orig	1994-02-24 09:11:43 UTC
-+++ cider1b1/common/lib/makeops
-@@ -11,6 +11,13 @@ $(CIDER_LIB_DIR)/helpdir/cider.idx: $(DI
- $(CIDER_LIB_DIR)/helpdir/cider.idx: $(OBJBIN_SPICE_DIR)/makeidx
- 	$(OBJBIN_SPICE_DIR)/makeidx $(CIDER_LIB_DIR)/helpdir/cider.txt
- 
-+$(CIDER_LIB_DIR)/helpdir/spice.txt: $(DISTLIB_DIR)/helpdir/spice.txt
-+	-cp $? $@
-+
-+$(CIDER_LIB_DIR)/helpdir/spice.idx: $(DISTLIB_DIR)/helpdir/spice.txt
-+$(CIDER_LIB_DIR)/helpdir/spice.idx: $(OBJBIN_SPICE_DIR)/makeidx
-+	$(OBJBIN_SPICE_DIR)/makeidx $(CIDER_LIB_DIR)/helpdir/spice.txt
-+
- $(CIDER_LIB_DIR):
- 	mkdir -p $(CIDER_LIB_DIR)
- 
diff --git a/cad/cider/files/patch-cider1b1_common_src_bin_main.c b/cad/cider/files/patch-cider1b1_common_src_bin_main.c
deleted file mode 100644
index 86450a4fe302..000000000000
--- a/cad/cider/files/patch-cider1b1_common_src_bin_main.c
+++ /dev/null
@@ -1,25 +0,0 @@
---- cider1b1/common/src/bin/main.c.orig	1994-03-12 08:20:59 UTC
-+++ cider1b1/common/src/bin/main.c
-@@ -36,6 +36,11 @@ Author: 1985 Wayne A. Christopher
- #endif
- 
- #include "patchlev.h"
-+
-+#ifdef __FreeBSD__
-+#include <ieeefp.h>
-+#endif
-+
- #include "suffix.h"
- 
- /* (Virtual) Machine architecture parameters */
-@@ -216,6 +221,10 @@ main(ac, av)
- 
- #endif
- 
-+#ifdef __FreeBSD__
-+    fpsetmask(fpgetmask() & ~FP_X_INV & ~FP_X_DZ & ~FP_X_OFL);
-+#endif
-+
-     /* MFB tends to jump to 0 on errors.  This tends to catch it. */
-     if (started) {
-         fprintf(cp_err, "main: Internal Error: jump to zero\n");
diff --git a/cad/cider/files/patch-cider1b1_common_src_bin_makeops b/cad/cider/files/patch-cider1b1_common_src_bin_makeops
deleted file mode 100644
index 1245c2598f2f..000000000000
--- a/cad/cider/files/patch-cider1b1_common_src_bin_makeops
+++ /dev/null
@@ -1,29 +0,0 @@
---- cider1b1/common/src/bin/makeops.orig	1994-03-08 03:39:12 UTC
-+++ cider1b1/common/src/bin/makeops
-@@ -19,14 +19,14 @@ $(CIDER_EXEC_DIR):
- 	mkdir $(CIDER_EXEC_DIR)
- 
- cider.o: main.c $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR $(SRC_DIR)/main.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR $(SRC_DIR)/main.c $(ASM_HACK)
- 	mv -f main.o $@
- 
- conf.o: conf.c
--	$(CC) $(CFLAGS) $(INCLUDE) -c conf.c $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) $(INCLUDE) -c conf.c $(ASM_HACK)
- 
- $(TUNEFILE).o: $(TUNEFILE).c
--	$(CC) $(CFLAGS) $(INCLUDE) -c $(TUNEFILE).c $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) $(INCLUDE) -c $(TUNEFILE).c $(ASM_HACK)
- 
- conf.c: config.c $(SYS_CONF)/$(OBJECTIVE)
- 	@echo Creating "$@":
-@@ -66,7 +66,7 @@ LIBCDR	= $(NULIB)/dev.a $(NULIB)/input.a
- cider: cider.o conf.o $(TUNEFILE).o $(OBJCDR) $(LIBBEFS) $(LIBCDR) $(LIBAFTS) \
- 	  $(SYS_CONF)/$(OBJECTIVE)-ld
- 	-@rm -f cider
--	$(CC) -o $@ cider.o conf.o $(TUNEFILE).o $(OBJCDR) \
-+	$(REAL_CC) -o $@ cider.o conf.o $(TUNEFILE).o $(OBJCDR) \
- 	   $(LIBBEFS) $(LIBCDR) $(LIBAFTS) $(LIBTCGMSG) $(LIBX) $(LDFLAGS)
- 
- qcider: qcider.tpl $(SYS_CONF)/$(OBJECTIVE)
diff --git a/cad/cider/files/patch-cider1b1_common_src_lib_input_meshset.c b/cad/cider/files/patch-cider1b1_common_src_lib_input_meshset.c
deleted file mode 100644
index 3b3fa012bcd1..000000000000
--- a/cad/cider/files/patch-cider1b1_common_src_lib_input_meshset.c
+++ /dev/null
@@ -1,17 +0,0 @@
---- cider1b1/common/src/lib/input/meshset.c.orig	1994-01-29 19:30:51 UTC
-+++ cider1b1/common/src/lib/input/meshset.c
-@@ -36,12 +36,14 @@ static int maxLimSpacing( double, double
-     double *, int *, int * );
- static int oneSideRatio( double, double, double *, int );
- static int twoSideRatio( double, double, double, double *, int, int );
-+static int MESHspacing( MESHcard *, double *, double *, int *, int *, int * );
- #else
- static int oneSideSpacing();
- static int twoSideSpacing();
- static int maxLimSpacing();
- static int oneSideRatio();
- static int twoSideRatio();
-+static int MESHspacing();
- #endif
- 
- /* END OF HEADER */
diff --git a/cad/cider/files/patch-cider1b1_common_src_lib_support_erfc.c b/cad/cider/files/patch-cider1b1_common_src_lib_support_erfc.c
deleted file mode 100644
index fafddd9d2b3e..000000000000
--- a/cad/cider/files/patch-cider1b1_common_src_lib_support_erfc.c
+++ /dev/null
@@ -1,16 +0,0 @@
---- cider1b1/common/src/lib/support/erfc.c.orig	1994-01-29 19:29:27 UTC
-+++ cider1b1/common/src/lib/support/erfc.c
-@@ -10,6 +10,7 @@ Author:	1987 Kartikeya Mayaram, U. C. Be
- 
- /* erfc computes the erfc(x) the code is from sedan's derfc.f */
- 
-+#ifdef HAS_NO_ERFC
- double erfc ( x )
- double x;
- {
-@@ -46,4 +47,4 @@ double x;
-         return( 1.0 - sum2 );
-     }
- }
--
-+#endif
diff --git a/cad/cider/files/patch-cider1b1_common_src_lib_support_mobil.c b/cad/cider/files/patch-cider1b1_common_src_lib_support_mobil.c
deleted file mode 100644
index c6749392c79d..000000000000
--- a/cad/cider/files/patch-cider1b1_common_src_lib_support_mobil.c
+++ /dev/null
@@ -1,27 +0,0 @@
---- cider1b1/common/src/lib/support/mobil.c.orig	1994-01-29 19:29:43.000000000 +0000
-+++ cider1b1/common/src/lib/support/mobil.c
-@@ -304,7 +304,7 @@ double *pMup;
-       *pMup = info->muMax[HOLE][MAJOR];
-     }
-   }
--  return;
-+  return (0);
- }
- 
- MOBfieldDep (info, carrier, field, pMu, pDMu)
-@@ -321,7 +321,7 @@ double *pDMu;
- 
-   /* Quick check to make sure we really belong here. */
-   if (!FieldDepMobility)
--    return;
-+    return (0);
- 
-   sgnL = SGN (field);
-   eLateral = ABS (field);
-@@ -413,5 +413,5 @@ double *pDMu;
-   *pMu = mu;
-   *pDMu = dMuDEl;
- 
--  return;
-+  return (0);
- }
diff --git a/cad/cider/files/patch-cider1b1_common_util_build b/cad/cider/files/patch-cider1b1_common_util_build
deleted file mode 100644
index bc9003453bd8..000000000000
--- a/cad/cider/files/patch-cider1b1_common_util_build
+++ /dev/null
@@ -1,20 +0,0 @@
---- cider1b1/common/util/build.orig	1994-01-29 19:32:01 UTC
-+++ cider1b1/common/util/build
-@@ -89,7 +89,7 @@ DIR4=`basename ${TOP3}`
- 
- TMP_LEADER="${TMP_DIR}/buildl$$"
- TMP_TRAILER="${TMP_DIR}/buildt$$"
--trap "rm -f ${TMP_LEADER} ${TMP_TRAILER}; exit 1" 1 2 3 4 6 7 8 9 10 12 13 14 15
-+trap "rm -f ${TMP_LEADER} ${TMP_TRAILER}; exit 1" 1 2 3 4 6 7 8 10 12 13 14 15
- echo > "${TMP_TRAILER}"
- BAD=false
- DEBUG=
-@@ -166,7 +166,7 @@ if test -z "${DEBUG}"; then
- 	echo Begin build for "${SYS_NAME}" on "${BUILD_DATE}":
- 	$EXEC cat ${FILES0} "${TOP0}/${DIR}/${SUBDIR}/makedefs" \
- 		"${TMP_TRAILER}" "${SKEL_DIR}/make_std.bd" \
--	| /bin/make ${VERBOSE} -f - bootstrap DIR="${DIR}" SUBDIR="${SUBDIR}" \
-+	| make ${VERBOSE} -f - bootstrap CC="${CC}" DIR="${DIR}" SUBDIR="${SUBDIR}" \
- 		VPATH="${TOP0}/${DIR}/${SUBDIR}" CWD="${CWD}"
- 	echo Done with build at `date`
- else
diff --git a/cad/cider/files/patch-cider1b1_common_util_skeleton_make__def.bd b/cad/cider/files/patch-cider1b1_common_util_skeleton_make__def.bd
deleted file mode 100644
index 60490c0e7d23..000000000000
--- a/cad/cider/files/patch-cider1b1_common_util_skeleton_make__def.bd
+++ /dev/null
@@ -1,20 +0,0 @@
---- cider1b1/common/util/skeleton/make_def.bd.orig	1994-03-12 13:05:44 UTC
-+++ cider1b1/common/util/skeleton/make_def.bd
-@@ -48,7 +48,7 @@ ALL_PURPOSE	= default_all
- PRE_PURPOSE	= pre_$(PURPOSE)
- PURPOSE		= all
- INCLUDE		= -I$(INCLUDE_DIR) -I$(INCLUDE_SPICE_DIR) -I$(TCGMSG_DIR)/include
--CC		= cc
-+REAL_CC		= $(CC)
- 
- CIDER_TUNE	= -DBUG_ADDR=\"$(BUG_ADDR)\" -DHELP_DIR=\"$(HELP_DIR)\"	      \
- 		  -DSCRIPT_DIR=\"$(SCRIPT_DIR)\" -DNEWS_FILE=\"$(NEWS_FILE)\" \
-@@ -76,7 +76,7 @@ SPARSELIB	= sparse
- 
- LIBRARIES	= dev input oned twod spiceitf support
- 
--CFLAGS		= $(REAL_CC_OPT) $(SYS_CFLAGS)
-+REAL_CFLAGS	= $(REAL_CC_OPT) $(SYS_CFLAGS)
- 
- LIBRARY_HACK	= $(OBJLIB_DIR)/$(LIBRARY).a
- 
diff --git a/cad/cider/files/patch-cider1b1_common_util_skeleton_make__std.bd b/cad/cider/files/patch-cider1b1_common_util_skeleton_make__std.bd
deleted file mode 100644
index e163e04f43e7..000000000000
--- a/cad/cider/files/patch-cider1b1_common_util_skeleton_make__std.bd
+++ /dev/null
@@ -1,33 +0,0 @@
---- cider1b1/common/util/skeleton/make_std.bd.orig	1994-01-29 19:31:59 UTC
-+++ cider1b1/common/util/skeleton/make_std.bd
-@@ -23,7 +23,7 @@ BUILD_DIR =								      \
- 			DIR="$${DIR}"
- 
- .c.o:
--	$(CC) $(CFLAGS) $(INCLUDE) -c $(SRC_DIR)/$*.c $(OUTPUT) $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) $(INCLUDE) -c $(SRC_DIR)/$*.c $(OUTPUT) $(ASM_HACK)
- 
- bootstrap: always
- 	-@if test "x$(DIR)" = "xsrc/"; then				      \
-@@ -110,10 +110,10 @@ $(MSC_EXEC_FILE): makedefs $(SKELETON_DI
- 		cfiles="$(CFILES)";					      \
- 		for file in $${cfiles}; do				      \
- 		    if test -n "$(INC_SPECIAL)"; then			      \
--			    echo "$(CC) /I..\..\include /I..\dev /c $${file}" \
-+			    echo "$(REAL_CC) /I..\..\include /I..\dev /c $${file}" \
- 				    ">> ..\..\$(MSC_ERRS)";		      \
- 		    else						      \
--			    echo "$(CC) /I..\..\include /c $${file}"	      \
-+			    echo "$(REAL_CC) /I..\..\include /c $${file}"	      \
- 				    ">> ..\..\$(MSC_ERRS)";		      \
- 		    fi;							      \
- 		done;							      \
-@@ -123,7 +123,7 @@ $(MSC_EXEC_FILE): makedefs $(SKELETON_DI
- 	if test -n "$(MODULE_TARGET)"; then				      \
- 		cfiles="$(CFILES)";					      \
- 		for file in $${cfiles}; do				      \
--		    echo "$(CC) /I..\..\..\include /c" $${file}		      \
-+		    echo "$(REAL_CC) /I..\..\..\include /c" $${file}		      \
- 			    ">> ..\..\..\$(MSC_ERRS)";			      \
- 		done;							      \
- 		echo "lib ..\..\$(LIBRARY)$(NUMBER).lib"		      \
diff --git a/cad/cider/files/patch-spice3f5_common_conf_defaults b/cad/cider/files/patch-spice3f5_common_conf_defaults
deleted file mode 100644
index d02d7db76b57..000000000000
--- a/cad/cider/files/patch-spice3f5_common_conf_defaults
+++ /dev/null
@@ -1,18 +0,0 @@
---- spice3f5/common/conf/defaults.orig	1994-01-29 19:15:53 UTC
-+++ spice3f5/common/conf/defaults
-@@ -105,12 +105,12 @@ OBJ_TOP		= $(SYS_DIR)/obj
- #	identified as and SYSTEM is the name of the per-system definitions
- #	file listed on the "build" command line.
- 
--SPICE_DIR	= $(TOP1)/$(SYSTEM)
--SPICE_LIB_DIR	= $(SPICE_DIR)/lib
-+SPICE_DIR	= ${PREFIX}
-+SPICE_LIB_DIR	= $(SPICE_DIR)/share/spice3
- SPICE_EXEC_DIR	= $(SPICE_DIR)/bin
- 
- S_SPICE_DIR	= $(SPICE_DIR)
--S_SPICE_LIB_DIR	= $(S_SPICE_DIR)/lib
-+S_SPICE_LIB_DIR	= $(S_SPICE_DIR)/share/spice3
- S_SPICE_EXEC_DIR= $(S_SPICE_DIR)/bin
- 
- #	INSTALL_DIRS lists the directories that need to be created before
diff --git a/cad/cider/files/patch-spice3f5_common_src_bin_main.c b/cad/cider/files/patch-spice3f5_common_src_bin_main.c
deleted file mode 100644
index a76fac6af175..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_bin_main.c
+++ /dev/null
@@ -1,25 +0,0 @@
---- spice3f5/common/src/bin/main.c.orig	1994-03-12 08:22:28 UTC
-+++ spice3f5/common/src/bin/main.c
-@@ -36,6 +36,11 @@ Author: 1985 Wayne A. Christopher
- #endif
- 
- #include "patchlev.h"
-+
-+#ifdef __FreeBSD__
-+#include <ieeefp.h>
-+#endif
-+
- #include "suffix.h"
- 
- /* (Virtual) Machine architecture parameters */
-@@ -216,6 +221,10 @@ main(ac, av)
- 
- #endif
- 
-+#ifdef __FreeBSD__
-+    fpsetmask(fpgetmask() & ~FP_X_INV & ~FP_X_DZ & ~FP_X_OFL);
-+#endif
-+
-     /* MFB tends to jump to 0 on errors.  This tends to catch it. */
-     if (started) {
-         fprintf(cp_err, "main: Internal Error: jump to zero\n");
diff --git a/cad/cider/files/patch-spice3f5_common_src_bin_makeops b/cad/cider/files/patch-spice3f5_common_src_bin_makeops
deleted file mode 100644
index babb11888c86..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_bin_makeops
+++ /dev/null
@@ -1,169 +0,0 @@
---- spice3f5/common/src/bin/makeops.orig	1994-01-31 02:14:05 UTC
-+++ spice3f5/common/src/bin/makeops
-@@ -39,20 +39,20 @@ $(SPICE_EXEC_DIR):
- 	mkdir $(SPICE_EXEC_DIR)
- 
- spice3.o: main.c $(SRC_TOP)/include/patchlev.h $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR $(SRC_DIR)/main.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR $(SRC_DIR)/main.c $(ASM_HACK)
- 	mv -f main.o $@
- 
- bspice.o: main.c $(SRC_TOP)/include/patchlev.h $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR -DBATCH $(SRC_DIR)/main.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR -DBATCH $(SRC_DIR)/main.c $(ASM_HACK)
- 	mv -f main.o $@
- 
- cspice.o: main.c $(SRC_TOP)/include/patchlev.h $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR -DBATCH -DSPICE2 $(SRC_DIR)/main.c \
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR -DBATCH -DSPICE2 $(SRC_DIR)/main.c \
- 		$(ASM_HACK)
- 	mv -f main.o $@
- 
- nutmeg.o: main.c $(SRC_TOP)/include/patchlev.h $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) -c $(CFLAGS) $(INCLUDE) $(SRC_DIR)/main.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) $(SRC_DIR)/main.c $(ASM_HACK)
- 	mv -f main.o $@
- 
- conf.c: config.c $(SYS_CONF)/$(OBJECTIVE)
-@@ -63,7 +63,7 @@ conf.c: config.c $(SYS_CONF)/$(OBJECTIVE
- 	chmod -w "$@"
- 
- cconf.o: $(OBJ_DIR)/cconf.c
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR $(OBJ_DIR)/cconf.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR $(OBJ_DIR)/cconf.c $(ASM_HACK)
- 
- bconf.c: config.c $(SYS_CONF)/$(OBJECTIVE)
- 	@echo Creating "$@": ; rm -f "$@"
-@@ -73,7 +73,7 @@ bconf.c: config.c $(SYS_CONF)/$(OBJECTIV
- 	chmod -w "$@"
- 
- bconf.o: $(OBJ_DIR)/bconf.c
--	$(CC) -c $(CFLAGS) $(INCLUDE) -DSIMULATOR $(OBJ_DIR)/bconf.c $(ASM_HACK)
-+	$(REAL_CC) -c $(REAL_CFLAGS) $(INCLUDE) -DSIMULATOR $(OBJ_DIR)/bconf.c $(ASM_HACK)
- 
- cconf.c: config.c $(SYS_CONF)/$(OBJECTIVE)
- 	@echo Creating "$@": ; rm -f "$@"
-@@ -97,13 +97,13 @@ nconf.c: nconfig.c $(SYS_CONF)/$(OBJECTI
- 	chmod -w "$@"
- 
- $(TUNEFILE).o: $(TUNEFILE).c
--	${CC} ${CFLAGS} ${INCLUDE} -c $(TUNEFILE).c $(ASM_HACK)
-+	${REAL_CC} ${REAL_CFLAGS} ${INCLUDE} -c $(TUNEFILE).c $(ASM_HACK)
- 
- nconf.o: nconf.c
--	${CC} ${CFLAGS} ${INCLUDE} -c nconf.c $(ASM_HACK)
-+	${REAL_CC} ${REAL_CFLAGS} ${INCLUDE} -c nconf.c $(ASM_HACK)
- 
- conf.o: conf.c
--	${CC} ${CFLAGS} ${INCLUDE} -c conf.c $(ASM_HACK)
-+	${REAL_CC} ${REAL_CFLAGS} ${INCLUDE} -c conf.c $(ASM_HACK)
- 
- $(TUNEFILE).c: $(SYS_CONF)/$(OBJECTIVE)
- 	@echo "Creating $(TUNEFILE).c";					      \
-@@ -122,14 +122,14 @@ $(TUNEFILE).c: $(SYS_CONF)/$(OBJECTIVE)
- 	chmod -w "$@"
- 
- help.o: help.c $(SYS_CONF)/$(OBJECTIVE) $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) $(CFLAGS) $(INTERFACE_OPTS) $(INCX) \
-+	$(REAL_CC) $(REAL_CFLAGS) $(INTERFACE_OPTS) $(INCX) \
- 	-c $(INCLUDE) $(SRC_DIR)/help.c $(ASM_HACK)
- 
- spiced.o: spiced.c $(SYS_CONF)/$(OBJECTIVE) $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) $(CFLAGS) -c $(INCLUDE) $(SRC_DIR)/spiced.c $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) -c $(INCLUDE) $(SRC_DIR)/spiced.c $(ASM_HACK)
- 
- multidec.o: multidec.c $(SYS_CONF)/$(OBJECTIVE)-cc
--	$(CC) $(CFLAGS) -c $(INCLUDE) $(SRC_DIR)/multidec.c $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) -c $(INCLUDE) $(SRC_DIR)/multidec.c $(ASM_HACK)
- 
- LIB	= $(OBJLIB_DIR)
- 
-@@ -138,45 +138,45 @@ LIBS	= $(LIB)/fte.a $(LIB)/dev.a $(LIB)/
- 	$(LIB)/misc.a $(LIBTCGMSG)
- spice3: spice3.o $(LIBS) conf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	-@rm -f spice3
--	$(CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS)
-+	$(REAL_CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS)
- 
- spice3m: spice3.o $(LIBS) conf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	-@rm -f spice3m
--	$(CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
-+	$(REAL_CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
- 		/users/beorn/malloc.a
- 
- spice3mp: spice3.o $(LIBS) conf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	-@rm -f spice3mp
--	$(CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
-+	$(REAL_CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
- 		/users/beorn/mprof/libc_mp.a
- 
- spice3mp2: spice3.o $(LIBS) conf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	-@rm -f spice3mp
--	$(CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
-+	$(REAL_CC) -o $@ spice3.o conf.o $(TUNEFILE).o $(LIBS) $(LIBX) $(LDFLAGS) \
- 		/users/beorn/libc_mp.a
- 
- LIBB	= $(LIB)/fte.a $(LIB)/cp.a $(LIB)/dev.a $(LIB)/ckt.a \
- 	$(LIB)/inp.a $(LIB)/ni.a $(LIB)/$(SPARSELIB).a $(LIB)/misc.a
- bspice: bspice.o $(LIBB) bconf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f bspice
--	$(CC) -o $@ bspice.o bconf.o $(TUNEFILE).o $(LIBB) $(LDFLAGS)
-+	$(REAL_CC) -o $@ bspice.o bconf.o $(TUNEFILE).o $(LIBB) $(LDFLAGS)
- 
- bspicem: bspice.o $(LIBB) bconf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f bspice
--	$(CC) -o $@ bspice.o bconf.o $(TUNEFILE).o $(LIBB) $(LDFLAGS) \
-+	$(REAL_CC) -o $@ bspice.o bconf.o $(TUNEFILE).o $(LIBB) $(LDFLAGS) \
- 		/users/beorn/malloc.a
- 
- LIBC	= $(LIB)/fte.a $(LIB)/cp.a $(LIB)/dev.a $(LIB)/ckt.a \
- 	$(LIB)/inp.a $(LIB)/ni.a $(LIB)/$(SPARSELIB).a $(LIB)/misc.a
- cspice: cspice.o $(LIBC) cconf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f cspice
--	$(CC) -o $@ cspice.o cconf.o $(TUNEFILE).o $(LIBC) $(LDFLAGS)
-+	$(REAL_CC) -o $@ cspice.o cconf.o $(TUNEFILE).o $(LIBC) $(LDFLAGS)
- 
- LIBN	= $(LIB)/fte.a $(LIB)/cp.a $(LIB)/hlp.a  $(LIB)/mfb.a $(LIB)/misc.a   \
- 	$(LIBTCGMSG)
- nutmeg:	nutmeg.o $(LIBN) nconf.o $(TUNEFILE).o $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f nutmeg
--	$(CC) -o $@ nutmeg.o nconf.o $(TUNEFILE).o $(LIBN) $(LIBX) $(LDFLAGS)
-+	$(REAL_CC) -o $@ nutmeg.o nconf.o $(TUNEFILE).o $(LIBN) $(LIBX) $(LDFLAGS)
- 
- # old LIBSC= $(LIB)/fte.a $(LIB)/cp.a $(LIB)/fte.a $(LIB)/inp.a $(LIB)/misc.a
- LIBSC	= $(LIB)/misc.a $(LIBTCGMSG)
-@@ -186,28 +186,28 @@ SCFILES	= $(LIB)/fte/rawfile.o $(LIB)/ft
- 	  $(LIB)/cp/variable.o $(LIB)/cp/var2.o $(LIB)/fte/dimens.o
- sconvert: sconvert.o $(SCFILES) $(LIBSC) $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f sconvert
--	$(CC) -o $@ sconvert.o $(SCFILES) $(LIBSC) $(LDFLAGS)
-+	$(REAL_CC) -o $@ sconvert.o $(SCFILES) $(LIBSC) $(LDFLAGS)
- 
- LIBP2M	= $(LIB)/cp.a $(LIB)/inp.a $(LIB)/misc.a
- proc2mod: proc2mod.o $(LIBP2M) $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f proc2mod
--	$(CC) -o $@ proc2mod.o $(LIBP2M) $(LDFLAGS)
-+	$(REAL_CC) -o $@ proc2mod.o $(LIBP2M) $(LDFLAGS)
- 
- LIBH	= $(LIB)/hlp.a $(LIB)/cp.a $(LIB)/misc.a
- help: help.o $(LIBH) $(TUNEFILE).o
- 	@-rm -f help
--	$(CC) -o $@ help.o $(LIBH) $(LIBX) $(LDFLAGS) $(TUNEFILE).o
-+	$(REAL_CC) -o $@ help.o $(LIBH) $(LIBX) $(LDFLAGS) $(TUNEFILE).o
- 
- makeidx: makeidx.o $(LIB)/misc.a
- 	@-rm -f makeidx
--	$(CC) -o $@ makeidx.o $(LIB)/misc.a
-+	$(REAL_CC) -o $@ makeidx.o $(LIB)/misc.a
- 
- LIBSD	= $(LIB)/misc.a
- spiced: spiced.o $(LIBSD) $(TUNEFILE).o
- 	@-rm -f spiced
--	$(CC) -o $@ spiced.o $(LIBSD) $(TUNEFILE).o
-+	$(REAL_CC) -o $@ spiced.o $(LIBSD) $(TUNEFILE).o
- 
- LIBMD	= $(LIB)/sparse.a $(LIB)/misc.a
- multidec: multidec.o $(LIBMD) $(SYS_CONF)/$(OBJECTIVE)-ld
- 	@-rm -f $@
--	$(CC) -o $@ multidec.o $(LIBMD) $(LDFLAGS) $(GETOPTLIB)
-+	$(REAL_CC) -o $@ multidec.o $(LIBMD) $(LDFLAGS) $(GETOPTLIB)
diff --git a/cad/cider/files/patch-spice3f5_common_src_bin_sconvert.c b/cad/cider/files/patch-spice3f5_common_src_bin_sconvert.c
deleted file mode 100644
index bded4326dc00..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_bin_sconvert.c
+++ /dev/null
@@ -1,26 +0,0 @@
---- spice3f5/common/src/bin/sconvert.c.orig	1994-01-29 19:12:56 UTC
-+++ spice3f5/common/src/bin/sconvert.c
-@@ -80,19 +80,19 @@ main(ac, av)
- 
-         case 1: printf("Input file: ");
-             (void) fflush(stdout);
--            (void) gets(buf);
-+            (void) fgets(buf,BSIZE_SP,stdin);
-             sf = copy(buf);
-             printf("Input type: ");
-             (void) fflush(stdout);
--            (void) gets(buf);
-+            (void) fgets(buf,BSIZE_SP,stdin);
-             f = buf[0];
-             printf("Output file: ");
-             (void) fflush(stdout);
--            (void) gets(buf);
-+            (void) fgets(buf,BSIZE_SP,stdin);
-             af = copy(buf);
-             printf("Output type: ");
-             (void) fflush(stdout);
--            (void) gets(buf);
-+            (void) fgets(buf,BSIZE_SP,stdin);
-             t = buf[0];
-             break;
-         default:
diff --git a/cad/cider/files/patch-spice3f5_common_src_include_misc.h b/cad/cider/files/patch-spice3f5_common_src_include_misc.h
deleted file mode 100644
index 9bff43951a37..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_include_misc.h
+++ /dev/null
@@ -1,45 +0,0 @@
---- spice3f5/common/src/include/misc.h.orig	1994-01-29 19:14:17 UTC
-+++ spice3f5/common/src/include/misc.h
-@@ -5,6 +5,10 @@ Copyright 1990 Regents of the University
- #ifndef MISC_H
- #define MISC_H
- 
-+#if (defined(__unix__) || defined(unix)) && !defined(USG)
-+#include <sys/param.h>
-+#endif
-+
- #define BSIZE_SP      512
- 
- #ifdef HAS_EXIT1
-@@ -81,12 +85,16 @@ extern void srandom();
- #    define srandom	srand
- #  endif
- 
-+/*
- extern char *calloc();
- extern char *malloc();
-+*/
- extern char *realloc();
- extern char *getenv();
- extern int errno;
-+#if !(defined(BSD) && (BSD >= 199306))
- extern char *sys_errlist[];
-+#endif
- extern char *getenv();
- extern char *getwd();
- extern int rand();
-@@ -109,12 +117,14 @@ extern void clearerr();
- #    endif /* clearerr */
- #  endif /* HAS_CLEARERR */
- 
-+#if !(defined(BSD) && (BSD >= 199306))
- #  ifndef bzero
- extern int bzero();
- #  endif
- #  ifndef bcopy
- extern void bcopy();
- #  endif
-+#endif
- 
- #  ifndef index
- #    ifdef HAS_INDEX
diff --git a/cad/cider/files/patch-spice3f5_common_src_include_os__bsd.h b/cad/cider/files/patch-spice3f5_common_src_include_os__bsd.h
deleted file mode 100644
index 1132447c5f6f..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_include_os__bsd.h
+++ /dev/null
@@ -1,46 +0,0 @@
---- spice3f5/common/src/include/os_bsd.h.orig	1994-01-29 19:14:37 UTC
-+++ spice3f5/common/src/include/os_bsd.h
-@@ -6,20 +6,40 @@ Copyright 1990 Regents of the University
-  *	BSD and derivative systems
-  */
- 
-+#if (defined(__unix__) || defined(unix)) && !defined(USG)
-+#include <sys/param.h>
-+#endif
-+
- #include "os_unix.h"
- 
-+#if !(defined(BSD) && (BSD >= 199306))
- #define HAS_NO_ATRIGH_DECL	/* if asinh( ) is not in math.h		*/
--#define HAS_ATRIGH		/* acosh( ), asinh( ), atanh( )         */
- #define HAS_FTIME		/* ftime( ), <times.h>			*/
-+#define HAS_INDEX		/* index( ) instead of strchr( )	*/
-+#define HAS_STRINGS		/* use <strings.h> instead of <string.h> */
-+#endif
-+
-+#define HAS_ATRIGH		/* acosh( ), asinh( ), atanh( )         */
- #define HAS_TERMCAP		/* tgetxxx( )				*/
- #define HAS_VFORK		/* BSD-ism, should not be necessary	*/
--#define HAS_INDEX		/* index( ) instead of strchr( )	*/
- #define HAS_BCOPY		/* bcopy( ), bzero( )			*/
- #define HAS_BSDRANDOM		/* srandom( ) and random( )		*/
-+#ifdef __FreeBSD__
-+#define HAS_POSIXTTY		/* <termios.h>				*/
-+#else
- #define HAS_BSDTTY		/* <sgtty.h>				*/
-+#endif
- #define HAS_BSDDIRS		/* <sys/dir.h>				*/
- #define HAS_BSDRUSAGE		/* getrusage( )				*/
- #define HAS_BSDRLIMIT		/* getrlimit( )				*/
- #define HAS_DUP2
- #define HAS_GETWD		/* getwd(buf)				*/
--#define HAS_STRINGS		/* use <strings.h> instead of <string.h> */
-+
-+#if (defined(BSD) && (BSD >= 199306))
-+#define HAS_BSDSOCKETS		/* <net/inet.h>, socket( ), etc.	*/
-+#define HAS_BSDTIME		/* gettimeofday( ) return time		*/
-+#define HAS_FLOAT_H		/* float.h				*/
-+#define HAS_STRCHR		/* strchr( ) instead of index( )	*/
-+#define HAS_INTWAITSTATUS	/* wait(3)  takes an int *, not a union */
-+#undef HAS_UNIX_SEGMENT_HACK
-+#endif
diff --git a/cad/cider/files/patch-spice3f5_common_src_include_util.h b/cad/cider/files/patch-spice3f5_common_src_include_util.h
deleted file mode 100644
index 9daa1866f9c8..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_include_util.h
+++ /dev/null
@@ -1,35 +0,0 @@
---- spice3f5/common/src/include/util.h.orig	1994-01-29 19:14:24 UTC
-+++ spice3f5/common/src/include/util.h
-@@ -6,6 +6,10 @@ Author: 1985 Thomas L. Quarles
- #ifndef UTIL
- #define UTIL
- 
-+#if (defined(__unix__) || defined(unix)) && !defined(USG)
-+#include <sys/param.h>
-+#endif
-+
- /* #define MALLOC(x) calloc(1,(unsigned)(x)) */
- #define MALLOC(x) tmalloc((unsigned)(x))
- #define FREE(x) {if (x) {free((char *)(x));(x) = 0;}}
-@@ -18,8 +22,10 @@ Author: 1985 Thomas L. Quarles
- #include <stdlib.h>
- #endif
- #else
-+/*
- extern char *malloc();
- extern char *calloc();
-+*/
- extern char *realloc();
- extern void free();
- #endif
-@@ -44,8 +50,10 @@ double fabs();
- #endif
- 
- /* XXX Move these into the above ifdef someday */
-+#if !(defined(BSD) && (BSD >= 199306))
- #define MIN(a,b) ((a) < (b) ? (a) : (b))
- #define MAX(a,b) ((a) > (b) ? (a) : (b))
-+#endif
- #define SIGN(a,b) ( b >= 0 ? (a >= 0 ? a : - a) : (a >= 0 ? - a : a))
- 
- #define ABORT() fflush(stderr);fflush(stdout);abort();
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_cp_complete.c b/cad/cider/files/patch-spice3f5_common_src_lib_cp_complete.c
deleted file mode 100644
index 344fbe07a041..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_cp_complete.c
+++ /dev/null
@@ -1,20 +0,0 @@
---- spice3f5/common/src/lib/cp/complete.c.orig	1994-01-29 18:44:01 UTC
-+++ spice3f5/common/src/lib/cp/complete.c
-@@ -445,14 +445,14 @@ cp_ccon(on)
-     ison = on;
- 
-     if (ison == true) {
--	(void) ioctl(fileno(cp_in), TERM_GET, (char *) &OS_Buf);
-+    	tcgetattr(fileno(cp_in), &OS_Buf);
- 	sbuf = OS_Buf;
- 	sbuf.c_cc[VEOF] = 0;
- 	sbuf.c_cc[VEOL] = ESCAPE;
- 	sbuf.c_cc[VEOL2] = CNTRL_D;
--	(void) ioctl(fileno(cp_in), TERM_SET, (char *) &sbuf);
-+    	tcsetattr(fileno(cp_in), TCSANOW, &OS_Buf);
-     } else {
--	(void) ioctl(fileno(cp_in), TERM_SET, (char *) &OS_Buf);
-+    	tcsetattr(fileno(cp_in), TCSANOW, &OS_Buf);
-     }
- 
- #  endif
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_clip.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_clip.c
deleted file mode 100644
index 08e221e78837..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_clip.c
+++ /dev/null
@@ -1,21 +0,0 @@
---- spice3f5/common/src/lib/fte/clip.c.orig	1994-01-29 18:45:45 UTC
-+++ spice3f5/common/src/lib/fte/clip.c
-@@ -14,6 +14,7 @@ Author: 1982 Giles Billingsley
- #include "cpdefs.h"
- #include "ftedefs.h"
- #include "suffix.h"
-+#include "util.h"
- 
- #define POLYGONBUFSIZE 512
- /* XXX */
-@@ -33,8 +34,10 @@ Author: 1982 Giles Billingsley
-                          c |= CODEMAXY;
- 
- /* XXX */
-+/* Defined in "util.h".
- #define MAX(a, b) (((a) > (b)) ? (a) : (b))
- #define MIN(a, b) (((a) < (b)) ? (a) : (b))
-+*/
- #define SWAPINT(a, b) { int xxxx = (a); (a) = (b); (b) = xxxx; }
- 
- /* clip_line will clip a line to a rectangular area.  The returned
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_device.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_device.c
deleted file mode 100644
index 74ab3fce7d93..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_device.c
+++ /dev/null
@@ -1,55 +0,0 @@
---- spice3f5/common/src/lib/fte/device.c.orig	1994-03-08 05:14:19.000000000 +0000
-+++ spice3f5/common/src/lib/fte/device.c
-@@ -594,7 +594,7 @@ com_alter_common(wl, do_model)
- 
-     if (!ft_curckt) {
-         fprintf(cp_err, "Error: no circuit loaded\n");
--        return;
-+        return (0);
-     }
- 
-     words = wl;
-@@ -608,7 +608,7 @@ com_alter_common(wl, do_model)
-     }
-     if (!words) {
- 	fprintf(cp_err, "Error: no assignment found.\n");
--	return;
-+	return (0);
-     }
- 
-     /* device parameter = expr
-@@ -643,29 +643,29 @@ com_alter_common(wl, do_model)
-     }
-     if (!dev) {
- 	fprintf(cp_err, "Error: no model or device name provided.\n" );
--	return;
-+	return (0);
-     }
- 
-     words = eqword->wl_next;
-     names = ft_getpnames(words, false);
-     if (!names) {
- 	fprintf(cp_err, "Error: cannot parse new parameter value.\n");
--	return;
-+	return (0);
-     }
-     dv = ft_evaluate(names);
-     free_pnode(names);
-     if (!dv)
--	return;
-+	return (0);
-     if (dv->v_length < 1) {
- 	fprintf(cp_err, "Error: cannot evaluate new parameter value.\n");
--	return;
-+	return (0);
-     }
- 
-     if_setparam(ft_curckt->ci_ckt, &dev, param, dv, do_model);
- 
-     /* Vector data (dv) should get garbage-collected. */
- 
--    return;
-+    return (0);
- 
- #ifdef notdef
-     while (wl) {
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_graf.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_graf.c
deleted file mode 100644
index b7b1793e8340..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_graf.c
+++ /dev/null
@@ -1,12 +0,0 @@
---- spice3f5/common/src/lib/fte/graf.c.orig	1994-01-29 18:46:21 UTC
-+++ spice3f5/common/src/lib/fte/graf.c
-@@ -49,6 +49,9 @@ static char *ticlist = ticbuf;
- #define MAXTICS 100
- double *readtics();
- 
-+static int drawlegend();
-+static int gr_resize_internal();
-+
- #define XFACTOR 2       /* How much to expand the X scale during iplot. */
- #define YFACTOR 1.5     /* How much to expand the Y scale during iplot. */
- 
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_grid.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_grid.c
deleted file mode 100644
index 09edb3596886..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_grid.c
+++ /dev/null
@@ -1,12 +0,0 @@
---- spice3f5/common/src/lib/fte/grid.c.orig	1994-01-29 18:47:59 UTC
-+++ spice3f5/common/src/lib/fte/grid.c
-@@ -19,6 +19,9 @@ Copyright 1990 Regents of the University
- #define RAD_TO_DEG	(180.0 / M_PI)
- #define LABEL_CHARS	20
- 
-+static int drawlingrid();
-+static int drawloggrid();
-+
- static double *lingrid(), *loggrid();
- static void polargrid(), smithgrid();
- static void drawpolargrid( );
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_inp.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_inp.c
deleted file mode 100644
index bd2e7cc0de86..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_inp.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- spice3f5/common/src/lib/fte/inp.c.orig	1994-01-29 18:48:10 UTC
-+++ spice3f5/common/src/lib/fte/inp.c
-@@ -666,7 +666,7 @@ com_edit(wl)
- 
-     fprintf(cp_out, "run circuit? ");
-     fflush(cp_out);
--    (void) gets(buf);
-+    (void) fgets(buf,BSIZE_SP,stdin);
-     if (buf[0] != 'n') {
-       fprintf(cp_out, "running circuit\n");
-       com_run(NULL);
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_makedefs b/cad/cider/files/patch-spice3f5_common_src_lib_fte_makedefs
deleted file mode 100644
index 3fa2aa8a0e20..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_makedefs
+++ /dev/null
@@ -1,11 +0,0 @@
---- spice3f5/common/src/lib/fte/makedefs.orig	1994-01-31 00:52:12 UTC
-+++ spice3f5/common/src/lib/fte/makedefs
-@@ -28,7 +28,7 @@ LIBRARY		= fte
- LIB_TARGET	= $(OBJLIB_DIR)/$(LIBRARY).a
- 
- INCLUDE		= -I$(INCLUDE_DIR) -I$(TCGMSG_DIR)/include $(INCX)
--CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
-+REAL_CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
- CONF_DEP_EXTRA	= $(CONF_XCC)
- agraf.o: agraf.c
- arg.o: arg.c
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_fte_x11.c b/cad/cider/files/patch-spice3f5_common_src_lib_fte_x11.c
deleted file mode 100644
index 4496a7f75f18..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_fte_x11.c
+++ /dev/null
@@ -1,13 +0,0 @@
---- spice3f5/common/src/lib/fte/x11.c.orig	1994-01-29 18:48:34 UTC
-+++ spice3f5/common/src/lib/fte/x11.c
-@@ -61,6 +61,10 @@ typedef struct x11info {
- 
- #define DEVDEP(g) (*((X11devdep *) (g)->devdep))
- 
-+static int initlinestyles();
-+static int initcolors();
-+static int X_ScreentoData();
-+
- static void linear_arc( );
- static Display *display;
- static GC xorgc;
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_hlp_makedefs b/cad/cider/files/patch-spice3f5_common_src_lib_hlp_makedefs
deleted file mode 100644
index 5212175d90dd..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_hlp_makedefs
+++ /dev/null
@@ -1,11 +0,0 @@
---- spice3f5/common/src/lib/hlp/makedefs.orig	1994-01-31 00:52:51 UTC
-+++ spice3f5/common/src/lib/hlp/makedefs
-@@ -10,7 +10,7 @@ LIBRARY		= hlp
- LIB_TARGET	= $(OBJLIB_DIR)/$(LIBRARY).a
- 
- INCLUDE		= -I$(INCLUDE_DIR) -I$(TCGMSG_DIR)/include $(INCX)
--CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
-+REAL_CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
- CONF_DEP_EXTRA	= $(CONF_XCC)
- help.o: help.c
- provide.o: provide.c
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_hlp_readhelp.c b/cad/cider/files/patch-spice3f5_common_src_lib_hlp_readhelp.c
deleted file mode 100644
index 904728e090e0..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_hlp_readhelp.c
+++ /dev/null
@@ -1,13 +0,0 @@
---- spice3f5/common/src/lib/hlp/readhelp.c.orig	1994-01-29 18:44:53 UTC
-+++ spice3f5/common/src/lib/hlp/readhelp.c
-@@ -41,8 +41,8 @@ Author: 1986 Wayne A. Christopher, U. C.
- 
- static char *getsubject();
- static toplink *getsubtoplink();
--extern void sortlist(), tlfree();
--extern int sortcmp();
-+static void sortlist(), tlfree();
-+static int sortcmp();
- 
- static topic *alltopics = NULL;
- 
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_mfb_mfbcaps.c b/cad/cider/files/patch-spice3f5_common_src_lib_mfb_mfbcaps.c
deleted file mode 100644
index 300b6a359ee8..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_mfb_mfbcaps.c
+++ /dev/null
@@ -1,14 +0,0 @@
---- spice3f5/common/src/lib/mfb/mfbcaps.c.orig	1994-01-29 19:07:32 UTC
-+++ spice3f5/common/src/lib/mfb/mfbcaps.c
-@@ -43,9 +43,9 @@ static int hopcount;       /* detect inf
- 
- FILE   *POpen();
- char   *strcpy();
--char   *MFBSkip();
-+static char   *MFBSkip();
- char   *MFBGetStr();
--char   *MFBCapDecod();
-+static char   *MFBCapDecod();
- int    MFBGetNum();
- int    MFBGetFlag();
- int    MFBGetEnt();
diff --git a/cad/cider/files/patch-spice3f5_common_src_lib_sparse_spdefs.h b/cad/cider/files/patch-spice3f5_common_src_lib_sparse_spdefs.h
deleted file mode 100644
index 3533217e0ac6..000000000000
--- a/cad/cider/files/patch-spice3f5_common_src_lib_sparse_spdefs.h
+++ /dev/null
@@ -1,13 +0,0 @@
---- spice3f5/common/src/lib/sparse/spdefs.h.orig	1994-01-29 19:08:43 UTC
-+++ spice3f5/common/src/lib/sparse/spdefs.h
-@@ -132,8 +132,10 @@
- 
- /* Macro commands */
- /* Macro functions that return the maximum or minimum independent of type. */
-+#if !(defined(BSD) && (BSD >= 199306))
- #define  MAX(a,b)           ((a) > (b) ? (a) : (b))
- #define  MIN(a,b)           ((a) < (b) ? (a) : (b))
-+#endif
- 
- /* Macro function that returns the absolute value of a floating point number. */
- #define  ABS(a)             ((a) < 0 ? -(a) : (a))
diff --git a/cad/cider/files/patch-spice3f5_common_util_build b/cad/cider/files/patch-spice3f5_common_util_build
deleted file mode 100644
index 2be89831b1cb..000000000000
--- a/cad/cider/files/patch-spice3f5_common_util_build
+++ /dev/null
@@ -1,20 +0,0 @@
---- spice3f5/common/util/build.orig	1994-01-29 19:16:26 UTC
-+++ spice3f5/common/util/build
-@@ -96,7 +96,7 @@ DIR4=`basename ${TOP3}`
- 
- TMP_LEADER="${TMP_DIR}/buildl$$"
- TMP_TRAILER="${TMP_DIR}/buildt$$"
--trap 'rm -f ${TMP_LEADER} ${TMP_TRAILER}; exit 1' 1 2 3 4 6 7 8 9 10 12 13 14 15
-+trap 'rm -f ${TMP_LEADER} ${TMP_TRAILER}; exit 1' 1 2 3 4 6 7 8 10 12 13 14 15
- echo > "${TMP_TRAILER}"
- BAD=false
- DEBUG=
-@@ -171,7 +171,7 @@ if test -z "${DEBUG}"; then
- 	echo Begin build on `hostname` for "${SYS_NAME}" on "${BUILD_DATE}":
- 	$EXEC cat ${FILES0} "${TOP0}/${DIR}/${SUBDIR}/makedefs" \
- 		"${TMP_TRAILER}" "${SKEL_DIR}/make_std.bd" \
--	| make -f - bootstrap DIR="${DIR}" SUBDIR="${SUBDIR}" \
-+	| make -f - bootstrap CC="${CC}" DIR="${DIR}" SUBDIR="${SUBDIR}" \
- 		VPATH="${TOP0}/${DIR}/${SUBDIR}" CWD="${CWD}"
- 	echo Done with build at `date`
- else
diff --git a/cad/cider/files/patch-spice3f5_common_util_makelib.sh b/cad/cider/files/patch-spice3f5_common_util_makelib.sh
deleted file mode 100644
index fca161cdc303..000000000000
--- a/cad/cider/files/patch-spice3f5_common_util_makelib.sh
+++ /dev/null
@@ -1,11 +0,0 @@
---- spice3f5/common/util/makelib.sh.orig	1994-01-29 19:16:27 UTC
-+++ spice3f5/common/util/makelib.sh
-@@ -35,7 +35,7 @@ ENDOFMAKEDEFS
- 			cat >> makedefs <<ENDOFMAKEDEFSX
- 
- INCLUDE		= -I$(INCLUDE_DIR) $(INCX)
--CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
-+REAL_CFLAGS		= $(CC_OPT) $(SYS_CFLAGS) $(INTERFACE_OPTS)
- CONF_DEP_EXTRA	= $(CONF_XCC)
- ENDOFMAKEDEFSX
- 		fi
diff --git a/cad/cider/files/patch-spice3f5_common_util_skeleton_make__def.bd b/cad/cider/files/patch-spice3f5_common_util_skeleton_make__def.bd
deleted file mode 100644
index 3f724d25e2db..000000000000
--- a/cad/cider/files/patch-spice3f5_common_util_skeleton_make__def.bd
+++ /dev/null
@@ -1,20 +0,0 @@
---- spice3f5/common/util/skeleton/make_def.bd.orig	1994-02-24 07:07:01 UTC
-+++ spice3f5/common/util/skeleton/make_def.bd
-@@ -44,7 +44,7 @@ ALL_PURPOSE	= default_all
- PRE_PURPOSE	= pre_$(PURPOSE)
- PURPOSE		= all
- INCLUDE		= -I$(INCLUDE_DIR) -I$(TCGMSG_DIR)/include
--CC		= cc
-+REAL_CC		= $(CC)
- 
- 
- SPICE_TUNE	= -DBUG_ADDR=\"$(BUG_ADDR)\" -DHELP_DIR=\"$(HELP_DIR)\"	      \
-@@ -85,7 +85,7 @@ SPARSELIB	= sparse
- # LIBRARIES = ckt cp dev fte hlp inp mfb mfbpc misc ni smp sparse
- LIBRARIES = dev ckt cp fte hlp inp $(MFBLIB) misc ni $(SPARSELIB)
- 
--CFLAGS		= $(REAL_CC_OPT) $(SYS_CFLAGS)
-+REAL_CFLAGS		= $(REAL_CC_OPT) $(SYS_CFLAGS)
- 
- LIBRARY_HACK	= $(OBJLIB_DIR)/$(LIBRARY).a
- 
diff --git a/cad/cider/files/patch-spice3f5_common_util_skeleton_make__std.bd b/cad/cider/files/patch-spice3f5_common_util_skeleton_make__std.bd
deleted file mode 100644
index 38df3bb4d350..000000000000
--- a/cad/cider/files/patch-spice3f5_common_util_skeleton_make__std.bd
+++ /dev/null
@@ -1,33 +0,0 @@
---- spice3f5/common/util/skeleton/make_std.bd.orig	1994-01-29 19:16:16 UTC
-+++ spice3f5/common/util/skeleton/make_std.bd
-@@ -23,7 +23,7 @@ BUILD_DIR =								      \
- 			DIR="$${DIR}"
- 
- .c.o:
--	$(CC) $(CFLAGS) $(INCLUDE) -c $(SRC_DIR)/$*.c $(OUTPUT) $(ASM_HACK)
-+	$(REAL_CC) $(REAL_CFLAGS) $(INCLUDE) -c $(SRC_DIR)/$*.c $(OUTPUT) $(ASM_HACK)
- 
- bootstrap: always
- 	-@if test "x$(DIR)" = "xsrc/"; then				      \
-@@ -110,10 +110,10 @@ $(MSC_EXEC_FILE): makedefs $(SKELETON_DI
- 		cfiles="$(CFILES)";					      \
- 		for file in $${cfiles}; do				      \
- 		    if test -n "$(INC_SPECIAL)"; then			      \
--			    echo "$(CC) /I..\..\include /I..\dev /c $${file}" \
-+			    echo "$(REAL_CC) /I..\..\include /I..\dev /c $${file}" \
- 				    ">> ..\..\$(MSC_ERRS)";		      \
- 		    else						      \
--			    echo "$(CC) /I..\..\include /c $${file}"	      \
-+			    echo "$(REAL_CC) /I..\..\include /c $${file}"	      \
- 				    ">> ..\..\$(MSC_ERRS)";		      \
- 		    fi;							      \
- 		done;							      \
-@@ -123,7 +123,7 @@ $(MSC_EXEC_FILE): makedefs $(SKELETON_DI
- 	if test -n "$(MODULE_TARGET)"; then				      \
- 		cfiles="$(CFILES)";					      \
- 		for file in $${cfiles}; do				      \
--		    echo "$(CC) /I..\..\..\include /c" $${file}		      \
-+		    echo "$(REAL_CC) /I..\..\..\include /c" $${file}		      \
- 			    ">> ..\..\..\$(MSC_ERRS)";			      \
- 		done;							      \
- 		echo "lib ..\..\$(LIBRARY)$(NUMBER).lib"		      \
diff --git a/cad/cider/pkg-descr b/cad/cider/pkg-descr
deleted file mode 100644
index d3cd59f7521e..000000000000
--- a/cad/cider/pkg-descr
+++ /dev/null
@@ -1,24 +0,0 @@
-CIDER is a mixed-level circuit and device simulator.  CIDER attempts to
-provide greater simulation accuracy than a stand-alone circuit or device
-simulator can provide.  CIDER is based on the sequential mixed-level
-circuit and device simulator, CODECS.  In common with CODECS, CIDER embeds
-the circuit simulator, SPICE3, which provides circuit simulation
-capabilities, analytical models for semiconductor devices, and an
-interactive user interface.  An interface to the captive device simulator,
-DSIM, provides accurate, one- and two-dimensional numerical models based
-on the solution of Poisson's equation, and the electron and hole current-
-continuity equations.  The input format of CIDER couples SPICE-like
-circuit descriptions to a device description format similar to the one
-used by the PISCES device simulator developed at Stanford University.
-As a result, CIDER should seem reasonably familiar to designers already
-accustomed to both these tools.
-
-SPICE is a general-purpose circuit simulation program for nonlinear DC,
-nonlinear transient, and linear AC analyses. Circuits may contain resistors,
-capacitors, inductors, mutual inductors, independent voltage and current
-sources, four types of dependent sources, lossless and lossy transmission
-lines (two separate implementations), switches, uniform distributed RC
-lines, and the five most common semiconductor devices: diodes, BJTs, JFETs,
-MESFETs, and MOSFETs.
-
-WWW: http://infopad.eecs.berkeley.edu/~icdesign/SPICE/
diff --git a/cad/cider/pkg-plist b/cad/cider/pkg-plist
deleted file mode 100644
index 2c29816ac6dc..000000000000
--- a/cad/cider/pkg-plist
+++ /dev/null
@@ -1,96 +0,0 @@
-bin/cider
-bin/help
-bin/multidec
-bin/nutmeg
-bin/proc2mod
-bin/sconvert
-bin/spice3
-man/man1/sconvert.1.gz
-man/man1/nutmeg.1.gz
-man/man1/spice.1.gz
-man/man1/spice3.1.gz
-man/man1/cider.1.gz
-man/man3/mfb.3.gz
-man/man5/mfbcap.5.gz
-share/cider/cider/helpdir/cider.txt
-share/cider/cider/helpdir/spice.txt
-share/cider/cider/scripts/devaxis
-share/cider/cider/scripts/devload
-share/cider/cider/scripts/spinit
-share/cider/spice3/helpdir/spice.txt
-share/cider/spice3/mfbcap
-share/cider/spice3/news
-share/cider/spice3/scripts/setplot
-share/cider/spice3/scripts/spinit
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bicmos/bicmos.lib
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bicmos/bicmpd.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/astable.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/colposc.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/ecp.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/invchain.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/meclgate.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/pebjt.lib
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/pz.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/rtlinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/bjt/vco.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diode/diode.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diode/diotran.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/diode/pindiode.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/jfet/jfet.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/bootinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/charge.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/cmosinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/nmosinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/pass.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/mos/ringosc.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/BICMOS.LIB
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/bicmpd.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/bicmpu.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/clkfeed.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/cmosamp.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/eclinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/ecpal.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/foobar
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/gmamp.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/latch.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/ppef.1d.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/ppef.2d.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/readme
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/ringosc.1u.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/parallel/ringosc.2u.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/readme
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/resistor/gaasres.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/resistor/sires.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/astable.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/charge.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/colposc.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/dbridge.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/invchain.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/meclgate.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/nmosinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/pass.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/pullup.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/readme
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/recovery.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/rtlinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/serial/vco.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/bjtnoise.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/bsim1tst.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/bsim2tst.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/diffpair.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/diodisto.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/ltra_1.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/ltra_2.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/ltra_3.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/mixdisto.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/mos6inv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/mosamp2.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/mosmem.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/pz2.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/pzt.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/rc.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/rca3040.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/resnoise.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/rtlinv.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/schmitt.cir
-%%PORTEXAMPLES%%%%EXAMPLESDIR%%/spice3/simplepz.cir
diff --git a/cad/sceptre/Makefile b/cad/sceptre/Makefile
deleted file mode 100644
index ab64aa660347..000000000000
--- a/cad/sceptre/Makefile
+++ /dev/null
@@ -1,61 +0,0 @@
-# Created by: grog
-# $FreeBSD$
-
-PORTNAME=	sceptre
-PORTVERSION=	2012.061
-PORTREVISION=	7
-CATEGORIES=	cad
-MASTER_SITES=	http://alpha.fh-friedberg.de/iem/fileadmin/user_upload/novender/sceptre/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	General-purpose circuit analysis program
-
-LICENSE=	GPLv2
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-USES=		fortran
-
-MAKE_JOBS_UNSAFE=	yes
-NO_WRKSUBDIR=		yes
-
-FFLAGS+=	-fno-automatic
-PORTDOCS=	doc_en.pdf doc_ger.pdf install.pdf
-
-OPTIONS_DEFINE=	DOCS
-
-post-patch:
-	@${REINPLACE_CMD} -E \
-		-e '/^(FC|FFLAGS)[[:blank:]]*=/d' \
-		-e 's!/usr/local!${PREFIX}!' \
-		-e '/install.*BINDIR/{ s/install -s.*755/${INSTALL_PROGRAM}/ ; \
-			s/install -m.*755/${INSTALL_SCRIPT}/ ; }' \
-		-e '/install.*(ETCDIR|LIBDIR)/{ /install -d/d ; \
-			s/install.*644/${INSTALL_DATA}/ ; }' \
-				${WRKSRC}/Makefile
-	@${REINPLACE_CMD} -E \
-		-e '/^(FC|FFLAGS)[[:blank:]]*=/d' \
-		-e 's!ar rv!${AR} ${ARFLAGS}!' \
-		-e 's!ranlib!${RANLIB}!' \
-				${WRKSRC}/x[123]/Makefile
-	@${REINPLACE_CMD} \
-		-e 's!/usr/local!${PREFIX}!' \
-				${WRKSRC}/bin/ngp \
-				${WRKSRC}/bin/sceptre.inst
-	@${REINPLACE_CMD} -E \
-		-e 's!/usr/local!${PREFIX}!' \
-		-e "s!^(FC=')(.*)(')!\1${FC} ${FFLAGS}\3!" \
-				${WRKSRC}/bin/sceptre
-
-post-install-DOCS-on:
-	${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/install.pdf ${STAGEDIR}${DOCSDIR}
-	cd ${WRKSRC}/doc ; ${INSTALL_DATA} ${PORTDOCS:Mdoc_*} ${STAGEDIR}${DOCSDIR}
-
-do-test:
-	cd ${WRKSRC}/samples; for s in ${WRKSRC}/samples/*.d; do \
-		${WRKSRC}/bin/sceptre $${s%.d}; \
-	done
-
-.include <bsd.port.mk>
diff --git a/cad/sceptre/distinfo b/cad/sceptre/distinfo
deleted file mode 100644
index 6c9557f85467..000000000000
--- a/cad/sceptre/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (sceptre-2012.061.tar.gz) = 6ca602bab7e63c84747f243f72e02dc4bac1e0491cedca192e1a1c365349ae61
-SIZE (sceptre-2012.061.tar.gz) = 1190280
diff --git a/cad/sceptre/files/patch-Makefile b/cad/sceptre/files/patch-Makefile
deleted file mode 100644
index 01015e9cfba3..000000000000
--- a/cad/sceptre/files/patch-Makefile
+++ /dev/null
@@ -1,35 +0,0 @@
---- Makefile.orig	2014-08-14 16:40:12.245403240 +0800
-+++ Makefile	2014-08-14 16:40:52.823402660 +0800
-@@ -35,19 +35,19 @@ all: 
- 	cd x1;  ${MAKE} "FC=${FC}" "FFLAGS=${FFLAGS}" 
- 	cd x2;  ${MAKE} "FC=${FC}" "FFLAGS=${FFLAGS}" 
- install:
--	install -s -m 755 x1/exec1          ${BINDIR}
--	install -m 644    x2/exec2.o        ${LIBDIR}
--	install -m 644    x2/libx2.a        ${LIBDIR}
--	install -s -m 755 x3/ngp_gnu        ${BINDIR}
--	install -s -m 755 x3/asa            ${BINDIR}
--	install -m 644    x3/libx3.a        ${LIBDIR}
--	install -m 755    bin/sceptre       ${BINDIR}
--	install -m 755    bin/sceptre.inst  ${BINDIR}
--	install -m 755    bin/ngp           ${BINDIR}
--	install -m 644    lib/usrlib.a      ${LIBDIR}
--	install -m 644    lib/modellib.dat  ${LIBDIR}
--	install -d 			    ${ETCDIR}
--	install -m 644    etc/ngp.rc        ${ETCDIR}
-+	install -s -m 755 x1/exec1          $(DESTDIR)${BINDIR}
-+	install -m 644    x2/exec2.o        $(DESTDIR)${LIBDIR}
-+	install -m 644    x2/libx2.a        $(DESTDIR)${LIBDIR}
-+	install -s -m 755 x3/ngp_gnu        $(DESTDIR)${BINDIR}
-+	install -s -m 755 x3/asa            $(DESTDIR)${BINDIR}
-+	install -m 644    x3/libx3.a        $(DESTDIR)${LIBDIR}
-+	install -m 755    bin/sceptre       $(DESTDIR)${BINDIR}
-+	install -m 755    bin/sceptre.inst  $(DESTDIR)${BINDIR}
-+	install -m 755    bin/ngp           $(DESTDIR)${BINDIR}
-+	install -m 644    lib/usrlib.a      $(DESTDIR)${LIBDIR}
-+	install -m 644    lib/modellib.dat  $(DESTDIR)${LIBDIR}
-+	install -d 			    $(DESTDIR)${ETCDIR}
-+	install -m 644    etc/ngp.rc        $(DESTDIR)${ETCDIR}
- 	@echo "installation finished"
- uninstall:
- 	@rm -fv ${BINDIR}/exec1 
diff --git a/cad/sceptre/pkg-descr b/cad/sceptre/pkg-descr
deleted file mode 100644
index 691f5a6def38..000000000000
--- a/cad/sceptre/pkg-descr
+++ /dev/null
@@ -1,8 +0,0 @@
-SCEPTRE (System for Circuit Evaluation and Prediction of Transient
-Radiation Effects) is a general purpose circuit analysis program which
-provides all three major analyses, AC, DC, and transient analysis, on
-either linear or nonlinear networks.  It employs a free-form input
-language and state variable methods to simulate problems of interest
-to electrical engineers.
-
-WWW: http://alpha.fh-friedberg.de/iem/84.html
diff --git a/cad/sceptre/pkg-plist b/cad/sceptre/pkg-plist
deleted file mode 100644
index 2b6afe0cd3ac..000000000000
--- a/cad/sceptre/pkg-plist
+++ /dev/null
@@ -1,12 +0,0 @@
-bin/exec1
-bin/ngp_gnu
-bin/asa
-bin/sceptre
-bin/sceptre.inst
-bin/ngp
-etc/ngp.rc
-lib/exec2.o
-lib/libx2.a
-lib/libx3.a
-lib/usrlib.a
-lib/modellib.dat
diff --git a/chinese/Makefile b/chinese/Makefile
index b752882d402c..e32c5fb1bee1 100644
--- a/chinese/Makefile
+++ b/chinese/Makefile
@@ -100,12 +100,10 @@
     SUBDIR += qt4-codecs-tw
     SUBDIR += qterm
     SUBDIR += reciteword
-    SUBDIR += scim-array
     SUBDIR += scim-fcitx
     SUBDIR += scim-pinyin
     SUBDIR += scim-tables
     SUBDIR += sunpinyin
-    SUBDIR += telnet
     SUBDIR += tin
     SUBDIR += tintin++
     SUBDIR += ttf2pt1
@@ -115,6 +113,5 @@
     SUBDIR += wenju
     SUBDIR += wordpress-zh_CN
     SUBDIR += wordpress-zh_TW
-    SUBDIR += xpdf
 
 .include <bsd.port.subdir.mk>
diff --git a/chinese/scim-array/Makefile b/chinese/scim-array/Makefile
deleted file mode 100644
index 19b2aee2b639..000000000000
--- a/chinese/scim-array/Makefile
+++ /dev/null
@@ -1,35 +0,0 @@
-# Created by: Li-Lun Wang <llwang@infor.org>
-# $FreeBSD$
-
-PORTNAME=	scim-array
-PORTVERSION=	1.0.1
-PORTREVISION=	8
-CATEGORIES=	chinese
-MASTER_SITES=	http://of.openfoundry.org/download/scimarray/${PORTVERSION}/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Array 30 SCIM IMEngine module
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2+
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BUILD_DEPENDS=	scim:textproc/scim
-RUN_DEPENDS=	scim:textproc/scim
-
-GNU_CONFIGURE=	yes
-USES=		gettext gmake iconv libtool:keepla pkgconfig
-INSTALL_TARGET=	install-strip
-
-CFLAGS+=	-fPIC
-CPPFLAGS+=	-I${LOCALBASE}/include
-
-pre-configure:
-	@${REINPLACE_CMD} -e "s,@SCIM_MODULEDIR@,$$(pkg-config --variable=moduledir scim | ${SED} -e s,`pkg-config --variable=prefix scim`,${PREFIX},)," ${WRKSRC}/src/Makefile.in
-	@${REINPLACE_CMD} -e "s,@SCIM_ICONDIR@,$$(pkg-config --variable=icondir scim | ${SED} -e s,`pkg-config --variable=prefix scim`,${PREFIX},)," ${WRKSRC}/data/Makefile.in
-	@${REINPLACE_CMD} -e "s,@SCIM_SHAREDIR@,$$(pkg-config --variable=scimdatadir scim | ${SED} -e s,`pkg-config --variable=prefix scim`,${PREFIX},)," ${WRKSRC}/data/Makefile.in
-
-.include <bsd.port.mk>
diff --git a/chinese/scim-array/distinfo b/chinese/scim-array/distinfo
deleted file mode 100644
index d31f08a85458..000000000000
--- a/chinese/scim-array/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (scim-array-1.0.1.tar.gz) = 90b90dabbbffa68da746e8243536c3e113a7f6bc9ccb949b40c08b64f2c4590c
-SIZE (scim-array-1.0.1.tar.gz) = 2041106
diff --git a/chinese/scim-array/pkg-descr b/chinese/scim-array/pkg-descr
deleted file mode 100644
index 6123a491959b..000000000000
--- a/chinese/scim-array/pkg-descr
+++ /dev/null
@@ -1,4 +0,0 @@
-scim-array is an SCIM IMEngine module for array 30. It supports
-array 6.0 Unicode CJK Extension B and special input code.
-
-WWW: http://scimarray.openfoundry.org/
diff --git a/chinese/scim-array/pkg-plist b/chinese/scim-array/pkg-plist
deleted file mode 100644
index 80cd2874c1e6..000000000000
--- a/chinese/scim-array/pkg-plist
+++ /dev/null
@@ -1,12 +0,0 @@
-lib/scim-1.0/1.4.0/IMEngine/array.la
-lib/scim-1.0/1.4.0/IMEngine/array.so
-lib/scim-1.0/1.4.0/SetupUI/array-imengine-setup.la
-lib/scim-1.0/1.4.0/SetupUI/array-imengine-setup.so
-share/locale/ko/LC_MESSAGES/scim-array.mo
-share/locale/nl/LC_MESSAGES/scim-array.mo
-share/locale/zh_TW/LC_MESSAGES/scim-array.mo
-share/scim/Array/array-phrases.cin
-share/scim/Array/array-shortcode.cin
-share/scim/Array/array-special.cin
-share/scim/Array/array30.cin
-share/scim/icons/scim-array.png
diff --git a/chinese/telnet/Makefile b/chinese/telnet/Makefile
deleted file mode 100644
index 6a134d36752e..000000000000
--- a/chinese/telnet/Makefile
+++ /dev/null
@@ -1,56 +0,0 @@
-# Created by: Ching-Hong Wu <woju@freebsd.ntu.edu.tw>
-# $FreeBSD$
-
-PORTNAME=	telnet
-PORTVERSION=	1.0
-PORTREVISION=	1
-CATEGORIES=	chinese
-MASTER_SITES=	# none
-DISTFILES=	# none
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	8bit compatible telnet client for Chinese input
-
-PLIST_FILES=	bin/zh-telnet man/man1/zh-telnet.1.gz
-
-.include <bsd.port.pre.mk>
-
-.if exists (${SRC_BASE}/contrib/telnet/telnet)
-SRCDIR=		${SRC_BASE}/contrib/telnet/telnet
-CONTRIB_TELNET=	yes
-.elif exists (${SRC_BASE}/usr.bin/telnet)
-SRCDIR=		${SRC_BASE}/usr.bin/telnet
-.else
-IGNORE=		need to build this port with the source code of telnet
-.endif
-
-BROKEN=		does not build: libtelnet/Makefile: Could not find src.opts.mk
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-do-extract:
-	@${MKDIR} ${WRKDIR}
-	@${CP} -R ${SRCDIR} ${WRKSRC}
-.if defined(CONTRIB_TELNET)
-	@${CP} -R ${SRCDIR}/../libtelnet ${SRCDIR}/../../../usr.bin/telnet/Makefile ${WRKSRC}
-	@${CP} ${SRCDIR}/../arpa/telnet.h ${SRCDIR}/../../../lib/libtelnet/Makefile ${WRKSRC}/libtelnet
-.else
-	@${CP} -R ${SRCDIR}/../../lib/libtelnet ${WRKSRC}
-.endif
-
-pre-patch:
-.if defined(CONTRIB_TELNET)
-	@${REINPLACE_CMD} -e 's,/../../contrib/telnet,,g' ${WRKSRC}/Makefile ${WRKSRC}/libtelnet/Makefile
-	@${REINPLACE_CMD} -e 's,${TELNETDIR}/telnet,${TELNETDIR},g' ${WRKSRC}/Makefile
-	@${REINPLACE_CMD} -e 's,/arpa,,g' ${WRKSRC}/libtelnet/Makefile
-.endif
-	@${REINPLACE_CMD} -e 's,/../../lib,,g' ${WRKSRC}/Makefile
-
-pre-build:
-	@cd ${WRKSRC}/libtelnet && ${MAKE}
-
-do-install:
-	@${INSTALL_PROGRAM} ${WRKSRC}/telnet ${STAGEDIR}${PREFIX}/bin/zh-telnet
-	@${INSTALL_MAN} ${WRKSRC}/telnet.1 ${STAGEDIR}${MAN1PREFIX}/man/man1/zh-telnet.1
-
-.include <bsd.port.post.mk>
diff --git a/chinese/telnet/files/patch-sys_bsd.c b/chinese/telnet/files/patch-sys_bsd.c
deleted file mode 100644
index 44446ed9d110..000000000000
--- a/chinese/telnet/files/patch-sys_bsd.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- sys_bsd.c.orig	Sun May  4 16:03:33 2003
-+++ sys_bsd.c	Sun May  4 16:04:12 2003
-@@ -572,7 +572,7 @@
- 	else
- 		lmode &= ~LPASS8;
- #else
--	if (f & MODE_INBIN)
-+	if (1)
- 		tmp_tc.c_iflag &= ~ISTRIP;
- 	else
- 		tmp_tc.c_iflag |= ISTRIP;
diff --git a/chinese/telnet/pkg-descr b/chinese/telnet/pkg-descr
deleted file mode 100644
index bd312e952a80..000000000000
--- a/chinese/telnet/pkg-descr
+++ /dev/null
@@ -1,23 +0,0 @@
-Description:
-	Using /usr/bin/telnet in "8-bit environment", for example, BIG5-
-encoding Chinese characters environment in Taiwan, is somewhat in-convenient.
-	To be able to input Chinese characters, "-8 or -L" options are needed,
-however, using these options cause another problem. Specifying "-8 or -L"
-makes ^U or ^C or ^D or ... (any isprint(c)) malfunction when telnet to SunOS.
-
-How-To-Repeat:
-	/usr/bin/telnet -8 ms1.hinet.net       (ms1.hinet.net running Solaris)
-	login: abcde^U			       (or just press Enter)
-	=> the terminal state goes wrong, "reset" is needed to go back
-	   to "normal state"
-
-Fix:
-Apply the following patch:
-gopher://freebsd.csie.nctu.edu.tw/00%2f3%2fA0002063
-
-This make telnet "8-bit clean", being able to input 8-bit data (Chinese
-characters) without specifying "-8 or -L" options, and telnet to SunOS
-without trouble.
-
-See also:
-WWW: http://www.freebsd.org/cgi/query-pr.cgi?pr=6144
diff --git a/chinese/xpdf/Makefile b/chinese/xpdf/Makefile
deleted file mode 100644
index 2699efea5c26..000000000000
--- a/chinese/xpdf/Makefile
+++ /dev/null
@@ -1,65 +0,0 @@
-# Created by: chshen <statue@freebsd.sinica.edu.tw>
-# $FreeBSD$
-
-PORTNAME=	xpdf
-PORTVERSION=	3.03
-PORTEPOCH=	2
-CATEGORIES=	chinese graphics print
-MASTER_SITES=	ftp://ftp.foolabs.com/pub/xpdf/ \
-		TEX_CTAN/support/xpdf \
-		http://dryice.name/computer/FreeBSD/distfiles/
-PKGNAMESUFFIX=	-zhfont
-DISTFILES=	xpdf-chinese-simplified-2011-sep-02${EXTRACT_SUFX} \
-		xpdf-chinese-traditional-2011-sep-02${EXTRACT_SUFX}
-DIST_SUBDIR=	${PORTNAME}-chinese-${PORTVERSION}
-
-MAINTAINER=	hrs@FreeBSD.org
-COMMENT=	Chinese font support for xpdf
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-RUN_DEPENDS=	xpdf:graphics/xpdf \
-		${ADOBECMAPDIR}/ai0/CMap/Identity-H:print/adobe-cmaps \
-		${FONTSDIR}/STHeiti-Regular:chinese/font-std \
-		${FONTSDIR}/STSong-Light:chinese/font-std \
-		${FONTSDIR}/MSung-Light:chinese/font-std
-
-NO_BUILD=	yes
-NO_ARCH=	yes
-NO_WRKSUBDIR=	yes
-SUB_FILES=	dot.xpdfrc
-SUB_LIST=	ADOBECMAPDIR=${ADOBECMAPDIR} \
-		FONTSDIR=${FONTSDIR}
-PLIST_SUB=	EXTRARC=${EXTRARC}
-
-FONTSDIR=	${LOCALBASE}/share/fonts/std.zh_CN
-EXTRARC=	${DATADIR}/chinese-traditional/dot.xpdfrc
-ADOBECMAPDIR=	${LOCALBASE}/share/fonts/adobe-cmaps
-SIMP_FILES=	Adobe-GB1.cidToUnicode EUC-CN.unicodeMap GBK.unicodeMap \
-		ISO-2022-CN.unicodeMap README
-TRAD_FILES=	Adobe-CNS1.cidToUnicode Big5.unicodeMap \
-		Big5ascii.unicodeMap README
-
-do-install:
-	${MKDIR} ${STAGEDIR}${DATADIR}/chinese-simplified
-	cd ${WRKSRC}/xpdf-chinese-simplified && \
-	    ${INSTALL_DATA} ${SIMP_FILES} \
-		${STAGEDIR}${DATADIR}/chinese-simplified
-	${MKDIR} ${STAGEDIR}${DATADIR}/chinese-traditional
-	cd ${WRKSRC}/xpdf-chinese-traditional && \
-	    ${INSTALL_DATA} ${TRAD_FILES} \
-		${STAGEDIR}${DATADIR}/chinese-traditional
-	${INSTALL_DATA} ${WRKDIR}/dot.xpdfrc \
-	    ${STAGEDIR}${DATADIR}/chinese-traditional
-	${MKDIR} ${STAGEDIR}${DATADIR}/chinese-traditional/CMap
-	cd ${STAGEDIR}${DATADIR}/chinese-traditional/CMap && \
-	    ${FIND} ${ADOBECMAPDIR}/ac15/CMap \
-		-type f -exec ${LN} -s -f {} . \;
-	${MKDIR} ${STAGEDIR}${DATADIR}/chinese-simplified/CMap
-	cd ${STAGEDIR}${DATADIR}/chinese-simplified/CMap && \
-	    ${FIND} ${ADOBECMAPDIR}/ag15/CMap \
-		-type f -exec ${LN} -s -f {} . \;
-
-.include <bsd.port.mk>
diff --git a/chinese/xpdf/distinfo b/chinese/xpdf/distinfo
deleted file mode 100644
index 31fda6857c07..000000000000
--- a/chinese/xpdf/distinfo
+++ /dev/null
@@ -1,4 +0,0 @@
-SHA256 (xpdf-chinese-3.03/xpdf-chinese-simplified-2011-sep-02.tar.gz) = 04dcffe01cfa596ee655c1a072235e0b7803430e43582d78ee2e156f2e5364e9
-SIZE (xpdf-chinese-3.03/xpdf-chinese-simplified-2011-sep-02.tar.gz) = 907207
-SHA256 (xpdf-chinese-3.03/xpdf-chinese-traditional-2011-sep-02.tar.gz) = 6ecd751da8c1d9c396ede45a1e96fbedf3e919156c8644f430b79fd5e501d35d
-SIZE (xpdf-chinese-3.03/xpdf-chinese-traditional-2011-sep-02.tar.gz) = 913558
diff --git a/chinese/xpdf/files/dot.xpdfrc.in b/chinese/xpdf/files/dot.xpdfrc.in
deleted file mode 100644
index 729b32c1d30f..000000000000
--- a/chinese/xpdf/files/dot.xpdfrc.in
+++ /dev/null
@@ -1,17 +0,0 @@
-#----- begin Chinese Traditional support package (2004-jul-27)
-cidToUnicode	Adobe-CNS1	%%DATADIR%%/chinese-traditional/Adobe-CNS1.cidToUnicode
-unicodeMap	Big5		%%DATADIR%%/chinese-traditional/Big5.unicodeMap
-unicodeMap	Big5ascii	%%DATADIR%%/chinese-traditional/Big5ascii.unicodeMap
-cMapDir		Adobe-CNS1	%%DATADIR%%/chinese-traditinoal/CMap
-toUnicodeDir			%%DATADIR%%/chinese-traditinoal/CMap
-fontFileCC	Adobe-CNS1	%%FONTSDIR%%/STHeiti-Regular
-#----- end Chinese Traditional support package
-#----- begin Chinese Simplified support package (2004-jul-27)
-cidToUnicode	Adobe-GB1	%%DATADIR%%/chinese-simplified/Adobe-GB1.cidToUnicode
-unicodeMap	ISO-2022-CN	%%DATADIR%%/chinese-simplified/ISO-2022-CN.unicodeMap
-unicodeMap	EUC-CN		%%DATADIR%%/chinese-simplified/EUC-CN.unicodeMap
-unicodeMap	GBK		%%DATADIR%%/chinese-simplified/GBK.unicodeMap
-cMapDir		Adobe-GB1	%%DATADIR%%/chinese-simplified/CMap
-toUnicodeDir			%%DATADIR%%/chinese-simplified/CMap
-fontFileCC	Adobe-GB1	%%FONTSDIR%%/STSong-Light
-#----- end Chinese Simplified support package
diff --git a/chinese/xpdf/pkg-descr b/chinese/xpdf/pkg-descr
deleted file mode 100644
index 0f75e99a8dce..000000000000
--- a/chinese/xpdf/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-This ports enables xpdf to read chinese (simplified and traditional) pdf.
-
-WWW: http://www.foolabs.com/xpdf/
diff --git a/chinese/xpdf/pkg-plist b/chinese/xpdf/pkg-plist
deleted file mode 100644
index b9c0d5e5c886..000000000000
--- a/chinese/xpdf/pkg-plist
+++ /dev/null
@@ -1,92 +0,0 @@
-%%DATADIR%%/chinese-simplified/Adobe-GB1.cidToUnicode
-%%DATADIR%%/chinese-simplified/EUC-CN.unicodeMap
-%%DATADIR%%/chinese-simplified/GBK.unicodeMap
-%%DATADIR%%/chinese-simplified/ISO-2022-CN.unicodeMap
-%%DATADIR%%/chinese-simplified/README
-%%DATADIR%%/chinese-traditional/Adobe-CNS1.cidToUnicode
-%%DATADIR%%/chinese-traditional/Big5.unicodeMap
-%%DATADIR%%/chinese-traditional/Big5ascii.unicodeMap
-%%DATADIR%%/chinese-traditional/README
-@exec exec < %D/etc/xpdfrc; rm -f %D/etc/xpdfrc; ( grep -v "%%EXTRARC%%"; echo "include %%EXTRARC%%" ) > %D/etc/xpdfrc; chmod 0644 %D/etc/xpdfrc
-@unexec exec < %D/etc/xpdfrc; rm -f %D/etc/xpdfrc; grep -v "%%EXTRARC%%" > %D/etc/xpdfrc; chmod 0644 %D/etc/xpdfrc
-%%DATADIR%%/chinese-traditional/dot.xpdfrc
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-0
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-1
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-2
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-3
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-4
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-5
-%%DATADIR%%/chinese-traditional/CMap/Adobe-CNS1-UCS2
-%%DATADIR%%/chinese-traditional/CMap/B5-H
-%%DATADIR%%/chinese-traditional/CMap/B5-V
-%%DATADIR%%/chinese-traditional/CMap/B5pc-H
-%%DATADIR%%/chinese-traditional/CMap/B5pc-UCS2
-%%DATADIR%%/chinese-traditional/CMap/B5pc-UCS2C
-%%DATADIR%%/chinese-traditional/CMap/B5pc-V
-%%DATADIR%%/chinese-traditional/CMap/CNS-EUC-H
-%%DATADIR%%/chinese-traditional/CMap/CNS-EUC-V
-%%DATADIR%%/chinese-traditional/CMap/CNS1-H
-%%DATADIR%%/chinese-traditional/CMap/CNS1-V
-%%DATADIR%%/chinese-traditional/CMap/CNS2-H
-%%DATADIR%%/chinese-traditional/CMap/CNS2-V
-%%DATADIR%%/chinese-traditional/CMap/ETHK-B5-H
-%%DATADIR%%/chinese-traditional/CMap/ETHK-B5-V
-%%DATADIR%%/chinese-traditional/CMap/ETen-B5-H
-%%DATADIR%%/chinese-traditional/CMap/ETen-B5-UCS2
-%%DATADIR%%/chinese-traditional/CMap/ETen-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKdla-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKdla-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKdlb-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKdlb-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKgccs-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKgccs-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKm314-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKm314-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKm471-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKm471-B5-V
-%%DATADIR%%/chinese-traditional/CMap/HKscs-B5-H
-%%DATADIR%%/chinese-traditional/CMap/HKscs-B5-V
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UCS2-H
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UCS2-V
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF16-H
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF16-V
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF32-H
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF32-V
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF8-H
-%%DATADIR%%/chinese-traditional/CMap/UniCNS-UTF8-V
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-0
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-1
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-2
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-3
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-4
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-5
-%%DATADIR%%/chinese-simplified/CMap/Adobe-GB1-UCS2
-%%DATADIR%%/chinese-simplified/CMap/GB-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GB-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/GB-H
-%%DATADIR%%/chinese-simplified/CMap/GB-V
-%%DATADIR%%/chinese-simplified/CMap/GBK-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GBK-EUC-UCS2
-%%DATADIR%%/chinese-simplified/CMap/GBK-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/GBK2K-H
-%%DATADIR%%/chinese-simplified/CMap/GBK2K-V
-%%DATADIR%%/chinese-simplified/CMap/GBKp-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GBKp-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/GBT-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GBT-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/GBT-H
-%%DATADIR%%/chinese-simplified/CMap/GBT-V
-%%DATADIR%%/chinese-simplified/CMap/GBTpc-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GBTpc-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/GBpc-EUC-H
-%%DATADIR%%/chinese-simplified/CMap/GBpc-EUC-UCS2
-%%DATADIR%%/chinese-simplified/CMap/GBpc-EUC-UCS2C
-%%DATADIR%%/chinese-simplified/CMap/GBpc-EUC-V
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UCS2-H
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UCS2-V
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF16-H
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF16-V
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF32-H
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF32-V
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF8-H
-%%DATADIR%%/chinese-simplified/CMap/UniGB-UTF8-V
diff --git a/comms/Makefile b/comms/Makefile
index 96550f500b39..24d2f57647bb 100644
--- a/comms/Makefile
+++ b/comms/Makefile
@@ -71,11 +71,8 @@
     SUBDIR += hylafax
     SUBDIR += ibp
     SUBDIR += inspectrum
-    SUBDIR += java-commapi
-    SUBDIR += java-commapi-freebsd
     SUBDIR += java-simple-serial-connector
     SUBDIR += jerm
-    SUBDIR += jsdr
     SUBDIR += kb
     SUBDIR += kermit
     SUBDIR += klog
@@ -168,7 +165,6 @@
     SUBDIR += seyon
     SUBDIR += sms_client
     SUBDIR += smstools3
-    SUBDIR += soundmodem
     SUBDIR += spandsp
     SUBDIR += splat
     SUBDIR += sredird
diff --git a/comms/java-commapi-freebsd/Makefile b/comms/java-commapi-freebsd/Makefile
deleted file mode 100644
index f653a4d10f1c..000000000000
--- a/comms/java-commapi-freebsd/Makefile
+++ /dev/null
@@ -1,37 +0,0 @@
-# Created by: Ari Suutari <ari.suutari@syncrontech.com>
-# $FreeBSD$
-
-PORTNAME=	java-commapi-freebsd
-PORTVERSION=	0.9
-PORTREVISION=	1
-CATEGORIES=	comms java
-MASTER_SITES=	http://www.syncrontech.org/freebsd/
-DISTNAME=	freebsd-commapi-${PORTVERSION}
-
-MAINTAINER=	ari.suutari@syncrontech.com
-COMMENT=	Java Communication API for FreeBSD
-
-DEPRECATED=	Depends on BROKEN and expiring comms/java-commapi
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${JDKDIR}/jre/lib/ext/comm.jar:comms/java-commapi
-RUN_DEPENDS=	${JDKDIR}/jre/lib/ext/comm.jar:comms/java-commapi
-
-MAKE_JOBS_UNSAFE=	yes
-
-USE_JAVA=	yes
-JAVA_VERSION=	1.6+
-JAVA_OS=	native
-JAVA_BUILD=	yes
-
-JDKDIR=		${JAVA_HOME}
-
-MAKE_ENV=	JAVA_HOME=${JDKDIR}
-
-PLIST_SUB+=	JAVA_HOME=${JAVA_HOME:S/${PREFIX}\///}
-PLIST_FILES=	%%JAVA_HOME%%/jre/lib/ext/CommDriver.jar \
-		%%JAVA_HOME%%/jre/lib/${MACHINE_ARCH}/libSerial.so \
-		%%JAVA_HOME%%/jre/lib/${MACHINE_ARCH}/libParallel.so \
-		%%JAVA_HOME%%/jre/lib/javax.comm.properties
-
-.include <bsd.port.mk>
diff --git a/comms/java-commapi-freebsd/distinfo b/comms/java-commapi-freebsd/distinfo
deleted file mode 100644
index c79bd7c04e27..000000000000
--- a/comms/java-commapi-freebsd/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (freebsd-commapi-0.9.tar.gz) = a27a8ccacf9bab8d9c71fe833f5df1144b9cfa8b772d6d72f57dfb4141c5785b
-SIZE (freebsd-commapi-0.9.tar.gz) = 16122
diff --git a/comms/java-commapi-freebsd/files/patch-Makefile b/comms/java-commapi-freebsd/files/patch-Makefile
deleted file mode 100644
index d824816a8b63..000000000000
--- a/comms/java-commapi-freebsd/files/patch-Makefile
+++ /dev/null
@@ -1,46 +0,0 @@
---- Makefile.old	2014-05-12 09:30:47.000000000 +0300
-+++ Makefile	2014-05-12 09:40:31.000000000 +0300
-@@ -24,7 +24,7 @@
- JAVAC_CLASSPATH	=	$(JAVA_HOME)/jre/lib/ext/comm.jar
- JAVAH		=	$(JAVA_HOME)/bin/javah
- JARFILE		=	jar/CommDriver.jar
--CFLAGS		= 	-O1 -fPIC -shared -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/freebsd -I$(JAVA_HOME)/include/bsd
-+CFLAGS		+= 	-fPIC -shared -I$(JAVA_HOME)/include -I$(JAVA_HOME)/include/freebsd -I$(JAVA_HOME)/include/bsd
- MACHINE_ARCH	?=	i386
- 
- .SUFFIXES:	.java .class
-@@ -38,10 +38,12 @@
- # Install stuff
- #
- install: all
--	install -c -o bin -g bin -m 0444 lib/libParallel.so $(JAVA_HOME)/jre/lib/$(MACHINE_ARCH)
--	install -c -o bin -g bin -m 0444 lib/libSerial.so $(JAVA_HOME)/jre/lib/$(MACHINE_ARCH)
--	install -c -o bin -g bin -m 0444 javax.comm.properties $(JAVA_HOME)/jre/lib
--	install -c -o bin -g bin -m 0444 $(JARFILE) $(JAVA_HOME)/jre/lib/ext
-+	install -d -c -o bin -g bin -m 0755 $(DESTDIR)$(JAVA_HOME)/jre/lib/$(MACHINE_ARCH)
-+	install -d -c -o bin -g bin -m 0755 $(DESTDIR)$(JAVA_HOME)/jre/lib/ext
-+	install -c -o bin -g bin -m 0444 lib/libParallel.so $(DESTDIR)$(JAVA_HOME)/jre/lib/$(MACHINE_ARCH)
-+	install -c -o bin -g bin -m 0444 lib/libSerial.so $(DESTDIR)$(JAVA_HOME)/jre/lib/$(MACHINE_ARCH)
-+	install -c -o bin -g bin -m 0444 javax.comm.properties $(DESTDIR)$(JAVA_HOME)/jre/lib
-+	install -c -o bin -g bin -m 0444 $(JARFILE) $(DESTDIR)$(JAVA_HOME)/jre/lib/ext
- 
- # 
- # Clean all files produced by compile
-@@ -96,7 +98,7 @@
- 			src/$(JAVA_PKG_DIR)/javax_comm_ParallelPort.h \
- 			src/$(JAVA_PKG_DIR)/javax_comm_ParallelPortEvent.h
- 	if [ ! -d lib ]; then mkdir lib; fi
--	gcc $(CFLAGS) -o lib/libParallel.so src/$(JAVA_PKG_DIR)/libParallel.c 
-+	$(CC) $(CFLAGS) -o lib/libParallel.so src/$(JAVA_PKG_DIR)/libParallel.c 
- #
- # Serial driver JNI part
- #
-@@ -105,7 +107,7 @@
- 			src/$(JAVA_PKG_DIR)/javax_comm_SerialPort.h \
- 			src/$(JAVA_PKG_DIR)/javax_comm_SerialPortEvent.h
- 	if [ ! -d lib ]; then mkdir lib; fi
--	gcc $(CFLAGS) -o lib/libSerial.so src/$(JAVA_PKG_DIR)/libSerial.c 
-+	$(CC) $(CFLAGS) -o lib/libSerial.so src/$(JAVA_PKG_DIR)/libSerial.c 
- 
- .java.class:
- 	$(JAVAC) -classpath src:$(JAVAC_CLASSPATH) $*.java
diff --git a/comms/java-commapi-freebsd/pkg-descr b/comms/java-commapi-freebsd/pkg-descr
deleted file mode 100644
index f7b144eaee6b..000000000000
--- a/comms/java-commapi-freebsd/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-This is the official port of Sun's Java Communication API for FreeBSD.
-This API allows communications across RS-232 and
-parallel lines using Java technology under FreeBSD.
diff --git a/comms/java-commapi/Makefile b/comms/java-commapi/Makefile
deleted file mode 100644
index 577ae2f9020d..000000000000
--- a/comms/java-commapi/Makefile
+++ /dev/null
@@ -1,47 +0,0 @@
-# Created by: Ari Suutari <ari.suutari@syncrontech.com>
-# $FreeBSD$
-
-PORTNAME=	java-commapi
-PORTVERSION=	2.0.3
-PORTREVISION=	4
-CATEGORIES=	comms java
-MASTER_SITES=	#
-DISTNAME=	comm${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Sun's Java Communications API
-
-BROKEN=		No upstream anymore
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-USES=		zip
-USE_JAVA=	yes
-JAVA_VERSION=	1.6+
-
-NO_CDROM=	Sun has a funky license for this software
-RESTRICTED=	no commercial use
-NO_BUILD=	YES
-
-WRKSRC=		${WRKDIR}
-DISTDESCR=	"the Java Communications API ${PORTVERSION} for Generic Platform"
-DOWNLOAD_URL=	"https://cds.sun.com/is-bin/INTERSHOP.enfinity/WFS/CDS-CDS_SMI-Site/en_US/-/USD/ViewProductDetail-Start?ProductRef=JAVACOMM-3.0.1-LX-SP-G-F@CDS-CDS_SMI"
-PORTDESTDIR=	${STAGEDIR}${JAVA_HOME}/jre/lib/ext
-DISTFILE=	${DISTNAME}${EXTRACT_SUFX}
-DISTPATH=	${DISTDIR}/${DISTFILE}
-
-PLIST_SUB+=	JAVA_HOME=${JAVA_HOME:S/${PREFIX}\///}
-PLIST_FILES+=	%%JAVA_HOME%%/jre/lib/ext/comm.jar
-
-.include <bsd.port.pre.mk>
-
-.if !exists(${DISTPATH})
-IGNORE=You must manually fetch ${DISTDESCR} (${DISTFILE}) from ${DOWNLOAD_URL}, place it in ${DISTDIR} and then run make again
-.endif
-
-do-install:
-	@${ECHO} -n ">> Copying comm.jar to ${PORTDESTDIR}..."
-	@${MKDIR} ${PORTDESTDIR}
-	@${INSTALL_DATA} ${WRKSRC}/comm.jar ${PORTDESTDIR}
-	@${ECHO} " [ DONE ]"
-
-.include <bsd.port.post.mk>
diff --git a/comms/java-commapi/distinfo b/comms/java-commapi/distinfo
deleted file mode 100644
index 9a4e1035a837..000000000000
--- a/comms/java-commapi/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (comm2.0.3.zip) = 86e430d07aef32c6fe4fc0a1de40c54aeee6df154dbb8185399b30b6a78edd28
-SIZE (comm2.0.3.zip) = 32609
diff --git a/comms/java-commapi/pkg-descr b/comms/java-commapi/pkg-descr
deleted file mode 100644
index a7b772db7596..000000000000
--- a/comms/java-commapi/pkg-descr
+++ /dev/null
@@ -1,15 +0,0 @@
-The JavaTM Communications API can be used to write
-platform-independent communications applications for applications
-like voice mail, fax and smartcards.
-
-This version of the Java Communications API contains support for
-RS232 serial ports and IEEE 1284 parallel ports.
-With updated functionality, one can:
-
-Enumerate ports available on the system.
-Open and claim ownership of ports.
-Resolve port ownership contention between multiple applications.
-Perform asynchronous and synchronous I/O on ports.
-Receive Beans-style events describing communication port state changes.
-
-WWW: http://java.sun.com/products/javacomm/
diff --git a/comms/jsdr/Makefile b/comms/jsdr/Makefile
deleted file mode 100644
index 38eb7c528fdb..000000000000
--- a/comms/jsdr/Makefile
+++ /dev/null
@@ -1,39 +0,0 @@
-# Created by: Juergen Lock <nox@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	jsdr
-PORTVERSION=	4.1
-PORTREVISION=	4
-CATEGORIES=	comms audio hamradio
-MASTER_SITES=	http://www.sdr-j.tk/ \
-		LOCAL/nox/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	SDR tools for RTL2832-based USB sticks
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-LIB_DEPENDS+=	libqwt.so:x11-toolkits/qwt5 \
-		libportaudio.so:audio/portaudio \
-		libsamplerate.so:audio/libsamplerate \
-		libsndfile.so:audio/libsndfile \
-		libfftw3.so:math/fftw3
-
-USES=		qmake tar:tgz
-USE_QT4=	gui qt3support qmake_build moc_build rcc_build uic_build
-
-PORTDOCS=	*
-PLIST_FILES+=	bin/swreceiver bin/spectrum-viewer \
-		bin/mini-receiver bin/fmreceiver
-
-OPTIONS_DEFINE=	DOCS
-
-do-install-DOCS-on:
-	${MKDIR} ${STAGEDIR}${DOCSDIR}
-	${INSTALL_DATA} ${WRKSRC}/docs/* ${STAGEDIR}${DOCSDIR}
-
-.include <bsd.port.mk>
diff --git a/comms/jsdr/distinfo b/comms/jsdr/distinfo
deleted file mode 100644
index 4a34b76281cd..000000000000
--- a/comms/jsdr/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (jsdr-4.1.tgz) = 6c9f828378d3d9433de5b1d9db533faecfcc7e81b9577b3e510aee42ac3db97b
-SIZE (jsdr-4.1.tgz) = 2753477
diff --git a/comms/jsdr/files/patch-filters_fir-filters.cpp b/comms/jsdr/files/patch-filters_fir-filters.cpp
deleted file mode 100644
index ca518d9de964..000000000000
--- a/comms/jsdr/files/patch-filters_fir-filters.cpp
+++ /dev/null
@@ -1,15 +0,0 @@
---- filters/fir-filters.cpp.orig
-+++ filters/fir-filters.cpp
-@@ -28,8 +28,12 @@
- 
- #include	"fir-filters.h"
- #ifndef	__MINGW32__
-+#ifdef __FreeBSD__
-+#include	<stdlib.h>
-+#else
- #include	"alloca.h"
- #endif
-+#endif
- 
- //===================================================================
- //=====================================================================
diff --git a/comms/jsdr/files/patch-filters_iir-filters.cpp b/comms/jsdr/files/patch-filters_iir-filters.cpp
deleted file mode 100644
index d234b789d69e..000000000000
--- a/comms/jsdr/files/patch-filters_iir-filters.cpp
+++ /dev/null
@@ -1,15 +0,0 @@
---- filters/iir-filters.cpp.orig
-+++ filters/iir-filters.cpp
-@@ -28,8 +28,12 @@
- 
- #include	"iir-filters.h"
- #ifndef	__MINGW32__
-+#ifdef __FreeBSD__
-+#include	<stdlib.h>
-+#else
- #include	"alloca.h"
- #endif
-+#endif
- 
- #define	MAXORDER	0176
- 
diff --git a/comms/jsdr/files/patch-jsdr.pro b/comms/jsdr/files/patch-jsdr.pro
deleted file mode 100644
index 3387a40cf2fa..000000000000
--- a/comms/jsdr/files/patch-jsdr.pro
+++ /dev/null
@@ -1,11 +0,0 @@
---- jsdr.pro.orig	2016-11-18 22:17:37 UTC
-+++ jsdr.pro
-@@ -0,0 +1,8 @@
-+TEMPLATE = subdirs
-+
-+SUBDIRS = make-x64/swreceiver \
-+          make-x64/fmreceiver \
-+          make-x64/spectrum-viewer \
-+          make-x64/mini-receiver
-+
-+CONFIG += ordered 
diff --git a/comms/jsdr/files/patch-make-x64_fmreceiver_fmreceiver.pro b/comms/jsdr/files/patch-make-x64_fmreceiver_fmreceiver.pro
deleted file mode 100644
index f72538a64469..000000000000
--- a/comms/jsdr/files/patch-make-x64_fmreceiver_fmreceiver.pro
+++ /dev/null
@@ -1,24 +0,0 @@
---- make-x64/fmreceiver/fmreceiver.pro.orig	2012-09-16 16:23:45 UTC
-+++ make-x64/fmreceiver/fmreceiver.pro
-@@ -137,9 +137,18 @@ LIBS += -lstdc++
- #}
- 
- #for fedora use the second set
--unix {  INCLUDEPATH += /usr/include/qwt
--	INCLUDEPATH += /usr/include/ 
--	LIBS+=  -lqwt -lusb-1.0 -lrt -lportaudio -lsndfile -lsamplerate -lfftw3 -ldl
-+#unix {  INCLUDEPATH += /usr/include/qwt
-+#	INCLUDEPATH += /usr/include/ 
-+#	LIBS+=  -lqwt -lusb-1.0 -lrt -lportaudio -lsndfile -lsamplerate -lfftw3 -ldl
-+#}
-+
-+#for FreeBSD use the third set
-+unix {  INCLUDEPATH += ${LOCALBASE}/include/qwt
-+	INCLUDEPATH += ${LOCALBASE}/include
-+	QMAKE_LIBDIR += ${LOCALBASE}/lib
-+	LIBS+=  -lqwt -lusb -lrt -lportaudio -lsndfile -lsamplerate -lfftw3
-+	target.path = $$INSTALL_ROOT/$$PREFIX/bin
-+	INSTALLS += target
- }
- 
- 
diff --git a/comms/jsdr/files/patch-make-x64_jff-include.h b/comms/jsdr/files/patch-make-x64_jff-include.h
deleted file mode 100644
index e11450614793..000000000000
--- a/comms/jsdr/files/patch-make-x64_jff-include.h
+++ /dev/null
@@ -1,19 +0,0 @@
---- make-x64/jff-include.h.orig
-+++ make-x64/jff-include.h
-@@ -32,10 +32,16 @@
- #include	<complex>
- #include	<stdint.h>
- 
-+#ifdef __FreeBSD__
-+#include	<stdlib.h>
-+#else
- #include	<malloc.h>
-+#endif
- #ifndef __MINGW32__
-+#ifndef __FreeBSD__
- #include	"alloca.h"
- #endif
-+#endif
- 
- #ifdef __MINGW32__
- #define	CURRENT_VERSION		"4.1:x64"
diff --git a/comms/jsdr/files/patch-make-x64_mini-receiver_mini-receiver.pro b/comms/jsdr/files/patch-make-x64_mini-receiver_mini-receiver.pro
deleted file mode 100644
index e900291ffb8b..000000000000
--- a/comms/jsdr/files/patch-make-x64_mini-receiver_mini-receiver.pro
+++ /dev/null
@@ -1,24 +0,0 @@
---- make-x64/mini-receiver/mini-receiver.pro.orig	2012-10-02 08:15:01 UTC
-+++ make-x64/mini-receiver/mini-receiver.pro
-@@ -108,9 +108,18 @@ LIBS += -lstdc++
- #}
- 
- #for fedora use the second set
--unix {  INCLUDEPATH += /usr/include/qwt
--	INCLUDEPATH += /usr/include/ 
--	LIBS+=  -lqwt -lusb-1.0 -lrt -lportaudio -lsndfile -lsamplerate -lfftw3 -ldl
-+#unix {  INCLUDEPATH += /usr/include/qwt
-+#	INCLUDEPATH += /usr/include/ 
-+#	LIBS+=  -lqwt -lusb-1.0 -lrt -lportaudio -lsndfile -lsamplerate -lfftw3 -ldl
-+#}
-+
-+#for FreeBSD use the third set
-+unix {  INCLUDEPATH += ${LOCALBASE}/include/qwt
-+	INCLUDEPATH += ${LOCALBASE}/include
-+	QMAKE_LIBDIR += ${LOCALBASE}/lib
-+	LIBS+=  -lqwt -lusb -lrt -lportaudio -lsndfile -lsamplerate -lfftw3
-+	target.path = $$INSTALL_ROOT/$$PREFIX/bin
-+	INSTALLS += target
- }
- 
- 
diff --git a/comms/jsdr/files/patch-make-x64_spectrum-viewer_spectrum-viewer.pro b/comms/jsdr/files/patch-make-x64_spectrum-viewer_spectrum-viewer.pro
deleted file mode 100644
index 407f60b3d8b6..000000000000
--- a/comms/jsdr/files/patch-make-x64_spectrum-viewer_spectrum-viewer.pro
+++ /dev/null
@@ -1,25 +0,0 @@
---- make-x64/spectrum-viewer/spectrum-viewer.pro.orig	2012-10-02 08:19:58 UTC
-+++ make-x64/spectrum-viewer/spectrum-viewer.pro
-@@ -83,10 +83,18 @@ LIBS += -lsamplerate
- #}
- 
- #for fedora use the second set
--unix {  INCLUDEPATH += /usr/include/qwt
--	INCLUDEPATH += /usr/include/ 
--	INCLUDEPATH += /usr/local/include
--	LIBS+=  -lqwt -lusb-1.0 -lrt -lfftw3 -lsamplerate -ldl
-+#unix {  INCLUDEPATH += /usr/include/qwt
-+#	INCLUDEPATH += /usr/include/ 
-+#	INCLUDEPATH += /usr/local/include
-+#	LIBS+=  -lqwt -lusb-1.0 -lrt -lfftw3 -lsamplerate -ldl
-+#}
-+
-+#for FreeBSD use the third set
-+unix {  INCLUDEPATH += ${LOCALBASE}/include/qwt
-+	INCLUDEPATH += ${LOCALBASE}/include
-+	LIBS+=  -lqwt -lusb -lrt -lfftw3 -lsamplerate
-+	target.path = $$INSTALL_ROOT/$$PREFIX/bin
-+	INSTALLS += target
- }
- 
- 
diff --git a/comms/jsdr/files/patch-make-x64_swreceiver_swreceiver.pro b/comms/jsdr/files/patch-make-x64_swreceiver_swreceiver.pro
deleted file mode 100644
index 730260c1b208..000000000000
--- a/comms/jsdr/files/patch-make-x64_swreceiver_swreceiver.pro
+++ /dev/null
@@ -1,32 +0,0 @@
---- make-x64/swreceiver/swreceiver.pro.orig	2012-09-16 16:12:33 UTC
-+++ make-x64/swreceiver/swreceiver.pro
-@@ -180,13 +180,21 @@ LIBS += -lwinmm
- #}
- 
- #for Fedora use the second set
--unix {  INCLUDEPATH += /usr/include/qwt
--	INCLUDEPATH += /usr/include/ 
--	INCLUDEPATH += /usr/local/include/
--	LIBS += -L/usr/lib64
--	LIBS += -L/lib64
--	LIBS += -L/usr/local/lib
--	LIBS +=  -lqwt -lrt -lsndfile -lsamplerate  -lportaudio -lusb-1.0 -lfftw3 -ldl
--}
-+#unix {  INCLUDEPATH += /usr/include/qwt
-+#	INCLUDEPATH += /usr/include/ 
-+#	INCLUDEPATH += /usr/local/include/
-+#	LIBS += -L/usr/lib64
-+#	LIBS += -L/lib64
-+#	LIBS += -L/usr/local/lib
-+#	LIBS +=  -lqwt -lrt -lsndfile -lsamplerate  -lportaudio -lusb-1.0 -lfftw3 -ldl
-+#}
- 
-+#for FreeBSD use the third set
-+unix {  INCLUDEPATH += ${LOCALBASE}/include/qwt
-+	INCLUDEPATH += ${LOCALBASE}/include
-+	QMAKE_LIBDIR += ${LOCALBASE}/lib
-+	LIBS +=  -lqwt -lrt -lsndfile -lsamplerate  -lportaudio -lusb -lfftw3
-+	target.path = $$INSTALL_ROOT/$$PREFIX/bin
-+	INSTALLS += target
-+}
- 
diff --git a/comms/jsdr/files/patch-righandling_dabstick-2_librtlsdr.c b/comms/jsdr/files/patch-righandling_dabstick-2_librtlsdr.c
deleted file mode 100644
index 41a6e25e990c..000000000000
--- a/comms/jsdr/files/patch-righandling_dabstick-2_librtlsdr.c
+++ /dev/null
@@ -1,14 +0,0 @@
---- righandling/dabstick-2/librtlsdr.c.orig
-+++ righandling/dabstick-2/librtlsdr.c
-@@ -29,7 +29,11 @@
- 
- #define lmin(a, b) (((a) < (b)) ? (a) : (b))
- //#include <libusb.h>
-+#ifdef __FreeBSD__
-+#include	<libusb.h>
-+#else
- #include	"libusb-1.0/libusb.h"
-+#endif
- 
- 
- /*
diff --git a/comms/jsdr/files/patch-righandling_pmsdr_pmsdr_usb.h b/comms/jsdr/files/patch-righandling_pmsdr_pmsdr_usb.h
deleted file mode 100644
index c4843c321cbe..000000000000
--- a/comms/jsdr/files/patch-righandling_pmsdr_pmsdr_usb.h
+++ /dev/null
@@ -1,14 +0,0 @@
---- righandling/pmsdr/pmsdr_usb.h.orig
-+++ righandling/pmsdr/pmsdr_usb.h
-@@ -36,7 +36,11 @@
- //#ifdef __MINGW32__
- //#include	<libusb.h>
- //#else
-+#ifdef __FreeBSD__
-+#include	<libusb.h>
-+#else
- #include	<libusb-1.0/libusb.h>
-+#endif
- //#endif
- 
- class	RadioInterface;
diff --git a/comms/jsdr/files/patch-swreceiver_swdecoders_domino_dominodecoder.cpp b/comms/jsdr/files/patch-swreceiver_swdecoders_domino_dominodecoder.cpp
deleted file mode 100644
index f05136fe4d5f..000000000000
--- a/comms/jsdr/files/patch-swreceiver_swdecoders_domino_dominodecoder.cpp
+++ /dev/null
@@ -1,15 +0,0 @@
---- swreceiver/swdecoders/domino/dominodecoder.cpp.orig
-+++ swreceiver/swdecoders/domino/dominodecoder.cpp
-@@ -39,8 +39,12 @@
- #include	"gui.h"
- #include	"dominodecoder.h"
- #ifndef	__MINGW32__
-+#ifdef __FreeBSD__
-+#include	<stdlib.h>
-+#else
- #include	"alloca.h"
- #endif
-+#endif
- 
- /*
-  *	Standard Nasa coefficients for the viterbi decoder
diff --git a/comms/jsdr/files/patch-swreceiver_swdecoders_mfskdecoder_mfskdecoder.cpp b/comms/jsdr/files/patch-swreceiver_swdecoders_mfskdecoder_mfskdecoder.cpp
deleted file mode 100644
index 96dabe07ccbf..000000000000
--- a/comms/jsdr/files/patch-swreceiver_swdecoders_mfskdecoder_mfskdecoder.cpp
+++ /dev/null
@@ -1,15 +0,0 @@
---- swreceiver/swdecoders/mfskdecoder/mfskdecoder.cpp.orig
-+++ swreceiver/swdecoders/mfskdecoder/mfskdecoder.cpp
-@@ -32,8 +32,12 @@
- #include	"mfskdecoder.h"
- #include	"oscillator.h"
- #ifndef	__MINGW32__
-+#ifdef __FreeBSD__
-+#include	<stdlib.h>
-+#else
- #include	"alloca.h"
- #endif
-+#endif
- 
- #define	BitIsContained(pat, bit) ((pat) & (1 << (mfskNumBits - (bit + 1))))
- /*
diff --git a/comms/jsdr/files/patch-utilities_decimator.cpp b/comms/jsdr/files/patch-utilities_decimator.cpp
deleted file mode 100644
index 5b67bfccf3cc..000000000000
--- a/comms/jsdr/files/patch-utilities_decimator.cpp
+++ /dev/null
@@ -1,13 +0,0 @@
---- utilities/decimator.cpp.orig
-+++ utilities/decimator.cpp
-@@ -67,8 +67,8 @@ bool	downDecimator::doDecimate (DSPFLOAT
-  */
- 	this -> inSamplerate	= inSamplerate;
- 	this -> outSamplerate	= outSamplerate;
--	inperiod		= (int64_t)(100000000000) / inSamplerate; 
--	outperiod		= (int64_t)(100000000000) / outSamplerate;
-+	inperiod		= (int64_t)(100000000000LL) / inSamplerate; 
-+	outperiod		= (int64_t)(100000000000LL) / outSamplerate;
- 	oldinsampleTime		= 0;
- 	currentinsampleTime	= 0;
- 	oldinsampleValue	= 0;
diff --git a/comms/jsdr/pkg-descr b/comms/jsdr/pkg-descr
deleted file mode 100644
index 1120554e9569..000000000000
--- a/comms/jsdr/pkg-descr
+++ /dev/null
@@ -1,22 +0,0 @@
-SDR-J (formerly Jsdr) is a suite of four programs provided under a
-LGPL open source license for playing around with sdr (software
-defined radio). The software can be used directly with the PM-SDR
-kit and RTL2832U based dongles, and in the 32 bits Windows version
-with other kits as well.
-
-The suite contains four programs:
-
-- a full blown "short wave" receiver, which provides tuning in the
-  range of 100K .. 165M using the PM-SDR (although above 55 M with
-  reduced performance) and from app 55 MHz to app 900 Mhz or above
-  using an RTL2832U based dongle. The receiver provides quite a number
-  of decoders for amateur modes.
-- am/fm receiver covering the same frequency bands as the sw receiver,
-  however, with am bandwidths selectable, with fm mono and stereo
-  decoding as well as with rds decoding.
-- spectrum viewer for use with the RTL2832U based dongles, showing
-  spectra of up to 3 Mhz bandwidth.
-- mini receiver, a stripped version of the fm receiver, a gadget
-  for listening to WFM using DAB sticks.
-
-WWW: http://www.sdr-j.tk/
diff --git a/comms/soundmodem/Makefile b/comms/soundmodem/Makefile
deleted file mode 100644
index 259166cd5a1d..000000000000
--- a/comms/soundmodem/Makefile
+++ /dev/null
@@ -1,36 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	soundmodem
-PORTVERSION=	0.20
-CATEGORIES=	comms hamradio
-MASTER_SITES=	http://download.gna.org/soundmodem/
-
-MAINTAINER=	hamradio@FreeBSD.org
-COMMENT=	Amateur Radio sound modem
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-LIB_DEPENDS=	libaudiofile.so:audio/libaudiofile
-
-CONFIGURE_ARGS=	--disable-alsatest
-WRKSRC=		${WRKDIR}/${DISTNAME}
-USES=		gmake pkgconfig gettext
-HAS_CONFIGURE=	yes
-USE_GNOME=	gtk20 libxml2
-USE_RC_SUBR=	soundmodem
-USE_SUBMAKE=	yes
-
-post-patch:
-	${REINPLACE_CMD} -e 's|/etc/ax25|${LOCALBASE}/etc|g' \
-		${WRKSRC}/configapp/src/main.c\
-		${WRKSRC}/configapp/src/soundmodemconfig.8\
-		${WRKSRC}/soundcard/soundmodem.8\
-		${WRKSRC}/soundcard/main.c\
-		${WRKSRC}/soundmodem.spec
-
-.include <bsd.port.mk>
diff --git a/comms/soundmodem/distinfo b/comms/soundmodem/distinfo
deleted file mode 100644
index e714ab91086f..000000000000
--- a/comms/soundmodem/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (soundmodem-0.20.tar.gz) = 3f880349cbe4c8e27f02d276b2d3318e6b721cad6c0ab2ba8e2c1768251fd494
-SIZE (soundmodem-0.20.tar.gz) = 507650
diff --git a/comms/soundmodem/files/patch-configapp_src_Makefile.in b/comms/soundmodem/files/patch-configapp_src_Makefile.in
deleted file mode 100644
index ea6501ca6303..000000000000
--- a/comms/soundmodem/files/patch-configapp_src_Makefile.in
+++ /dev/null
@@ -1,20 +0,0 @@
---- configapp/src/Makefile.in.orig	2015-05-04 17:59:05 UTC
-+++ configapp/src/Makefile.in
-@@ -106,7 +106,7 @@ soundmodemconfig_DEPENDENCIES = ../../so
- 	../../soundcard/libaudioio.a ../../soundcard/libpttio.a \
- 	$(MODEMLIBS) ../../matlib/libmat.a ../../libmisc/libmisc.a \
- 	../../soundcard/libcommon.a $(am__DEPENDENCIES_1)
--soundmodemconfig_LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
-+soundmodemconfig_LINK = $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(INTLLIBS)\
- 	$(soundmodemconfig_LDFLAGS) $(LDFLAGS) -o $@
- AM_V_P = $(am__v_P_@AM_V@)
- am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
-@@ -366,7 +366,7 @@ soundmodemconfig_SOURCES = \
- 
- soundmodemconfig_LDADD = ../../soundcard/liblog.a ../../soundcard/libaudioio.a ../../soundcard/libpttio.a \
- 			$(MODEMLIBS) ../../matlib/libmat.a ../../libmisc/libmisc.a ../../soundcard/libcommon.a \
--			@LIBTHREAD@ @GTK_LIBS@ @XML_LIBS@ @AUDIOFILE_LIBS@ @ALSA_LIBS@ $(RCOBJ)
-+			@LIBINTL@ @LIBTHREAD@ @GTK_LIBS@ @XML_LIBS@ @AUDIOFILE_LIBS@ @ALSA_LIBS@ $(RCOBJ)
- 
- soundmodemconfig_LDFLAGS = $(MWINDOWS)
- EXTRA_DIST = configapp.rc soundmodemconfig.8
diff --git a/comms/soundmodem/files/patch-configure b/comms/soundmodem/files/patch-configure
deleted file mode 100644
index 21e38e9c67e9..000000000000
--- a/comms/soundmodem/files/patch-configure
+++ /dev/null
@@ -1,20 +0,0 @@
---- configure.orig	2015-05-04 17:59:03 UTC
-+++ configure
-@@ -869,7 +869,7 @@ pdfdir='${docdir}'
- psdir='${docdir}'
- libdir='${exec_prefix}/lib'
- localedir='${datarootdir}/locale'
--mandir='${datarootdir}/man'
-+mandir='${prefix}/man'
- 
- ac_prev=
- ac_dashdash=
-@@ -7565,7 +7565,7 @@ cat confdefs.h - <<_ACEOF >conftest.$ac_
- int
- main ()
- {
--
-+#include <stdio.h>
- /* ensure backward compatibility */
- #if !defined(SND_LIB_MAJOR) && defined(SOUNDLIB_VERSION_MAJOR)
- #define SND_LIB_MAJOR SOUNDLIB_VERSION_MAJOR
diff --git a/comms/soundmodem/files/patch-fsk_gendf9icfilt.cc b/comms/soundmodem/files/patch-fsk_gendf9icfilt.cc
deleted file mode 100644
index c1ea5ef9e7d8..000000000000
--- a/comms/soundmodem/files/patch-fsk_gendf9icfilt.cc
+++ /dev/null
@@ -1,21 +0,0 @@
---- fsk/gendf9icfilt.cc.orig	2003-01-06 14:28:19 UTC
-+++ fsk/gendf9icfilt.cc
-@@ -41,6 +41,8 @@ using namespace std;
- 
- #include "getopt.h"
- 
-+#define FFTSZ 2048
-+
- /* --------------------------------------------------------------------- */
- 
- template<typename T> complex<T> rxfilter(T freq)
-@@ -173,7 +175,8 @@ static void printfcoeff(ostream& os, uns
- 		printtransferfunc(os, fftsz, over);
- 	else
- 		os << "/* this file is automatically generated, do not edit!! */\n\n";
--	complex<double> fftb[fftsz];
-+//	complex<double> fftb[fftsz];
-+	complex<double> fftb[FFTSZ];
- 	double rpulse[fftsz], tpulse[fftsz];
- 	double dover = double(over) / fftsz;
- 	double sum;
diff --git a/comms/soundmodem/files/patch-matlib_mat.hh b/comms/soundmodem/files/patch-matlib_mat.hh
deleted file mode 100644
index 0fb9f0583436..000000000000
--- a/comms/soundmodem/files/patch-matlib_mat.hh
+++ /dev/null
@@ -1,63 +0,0 @@
---- matlib/mat.hh.orig	2003-01-05 19:19:33 UTC
-+++ matlib/mat.hh
-@@ -91,36 +91,6 @@ template<typename T> void mmul(T *c, con
-                 memcpy(c, r, d1 * d3 * sizeof(c[0]));
- }
- 
--template<typename T> void mdet(const T *c, unsigned int d)
--{
--        T *c2;
--        unsigned int i, j, k, l;
--        T det = 0, dr;
--
--        if (!d)
--                return 0;
--        if (d == 1)
--                return c[0];
--        if (d == 2)
--                return c[0] * c[3] - c[1] * c[2];
--        c2 = alloca(sizeof(T)*(d-1)*(d-1));
--        for (i = 0; i < d; i++) {
--                for (j = k = 0; j < d; j++) {
--                        if (j == i)
--                                continue;
--                        for (l = 0; l < d-1; l++)
--                                c2[l*(d-1)+k] = c[(l+1)*d+j];
--                        k++;
--                }
--                dr = mdet(c2, d-1);
--                if (i & 1)
--                        det -= dr * c[i];
--                else
--                        det += dr * c[i];
--        }
--        return det;
--}
--
- /* Transpose a matrix (a el C^{d1 x d2}, b el C^{d2 x d1}) */
- template<typename T> void mtranspose(T *b, const T *a, unsigned int d1, unsigned int d2)
- {
-@@ -440,23 +410,6 @@ template<typename T> void mlusolve(T *x,
- 	}
- }
- 
--template<typename T> void minv(T *ainv, const T *a, unsigned int d)
--{
--	T *u, *y;
--	unsigned int *p;
--	unsigned int k;
--
--	u = alloca(d * d * sizeof(u[0]));
--	p = alloca((d-1) * sizeof(p[0]));
--	mlufact(u, p, a, d);
--	for (k = 0; k < d; k++) {
--		y = &ainv[k*d];
--		memset(y, 0, d * sizeof(y[0]));
--		y[k] = T(1);
--		mlusolve(y, y, u, p, d);
--	}
--	mtranspose(ainv, ainv, d, d);
--}
- 
- /*
-  * Gauss-Seidel iterative solver
diff --git a/comms/soundmodem/files/patch-newqpsk_complex.h b/comms/soundmodem/files/patch-newqpsk_complex.h
deleted file mode 100644
index 123ce0e31b5e..000000000000
--- a/comms/soundmodem/files/patch-newqpsk_complex.h
+++ /dev/null
@@ -1,18 +0,0 @@
---- newqpsk/complex.h.orig	2015-05-04 17:51:16 UTC
-+++ newqpsk/complex.h
-@@ -10,11 +10,15 @@ typedef struct {
- #endif
- } complex;
- 
-+#if __clang__ > 0
-+#define only_inline inline
-+#else
- #if __GNUC__ < 5
- #define only_inline extern inline
- #else
- #define only_inline inline
- #endif
-+#endif
- 
- /*
-  * Complex multiplication.
diff --git a/comms/soundmodem/files/patch-newqpsk_fec.h b/comms/soundmodem/files/patch-newqpsk_fec.h
deleted file mode 100644
index fc6a0d4297ea..000000000000
--- a/comms/soundmodem/files/patch-newqpsk_fec.h
+++ /dev/null
@@ -1,18 +0,0 @@
---- newqpsk/fec.h.orig	2015-05-04 17:49:44 UTC
-+++ newqpsk/fec.h
-@@ -3,11 +3,15 @@
- 
- /* --------------------------------------------------------------------- */
- 
-+#if __clang__ > 0
-+#define only_inline inline
-+#else
- #if __GNUC__ < 5
- #define only_inline extern inline
- #else
- #define only_inline inline
- #endif
-+#endif
- 
- struct fecstate {
- 	int feclevel;
diff --git a/comms/soundmodem/files/patch-newqpsk_filter-i386.h b/comms/soundmodem/files/patch-newqpsk_filter-i386.h
deleted file mode 100644
index 33787122f7aa..000000000000
--- a/comms/soundmodem/files/patch-newqpsk_filter-i386.h
+++ /dev/null
@@ -1,11 +0,0 @@
---- newqpsk/filter-i386.h.orig	2015-05-04 17:52:25 UTC
-+++ newqpsk/filter-i386.h
-@@ -1,7 +1,7 @@
- #ifndef _FILTER_I386_H
- #define _FILTER_I386_H
- #define __HAVE_ARCH_MAC
--extern inline float mac(const float *a, const float *b, unsigned int size)
-+static inline float mac(const float *a, const float *b, unsigned int size)
- {
- 	float f;
- 	asm volatile (
diff --git a/comms/soundmodem/files/patch-newqpsk_genfilt.c b/comms/soundmodem/files/patch-newqpsk_genfilt.c
deleted file mode 100644
index 3f7ad8e3f96b..000000000000
--- a/comms/soundmodem/files/patch-newqpsk_genfilt.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- newqpsk/genfilt.c.orig	2002-08-09 20:01:52 UTC
-+++ newqpsk/genfilt.c
-@@ -18,7 +18,7 @@ int main(int argc, char **argv)
- 	puts("#define _FILTER_I386_H");
- 	puts("#define __HAVE_ARCH_MAC");
- 
--	puts("extern inline float mac(const float *a, const float *b, unsigned int size)");
-+	puts("static inline float mac(const float *a, const float *b, unsigned int size)");
- 	puts("{");
- 	puts("\tfloat f;");
- 	puts("\tasm volatile (");
diff --git a/comms/soundmodem/files/patch-newqpsk_misc.h b/comms/soundmodem/files/patch-newqpsk_misc.h
deleted file mode 100644
index 1a9e52ba6afc..000000000000
--- a/comms/soundmodem/files/patch-newqpsk_misc.h
+++ /dev/null
@@ -1,18 +0,0 @@
---- newqpsk/misc.h.orig	2015-05-04 17:50:51 UTC
-+++ newqpsk/misc.h
-@@ -5,11 +5,15 @@
- #define M_PI 3.14159265358979323846
- #endif
- 
-+#if __clang__ > 0
-+#define only_inline inline
-+#else
- #if __GNUC__ < 5
- #define only_inline extern inline
- #else
- #define only_inline inline
- #endif
-+#endif
- 
- /* ---------------------------------------------------------------------- */
- 
diff --git a/comms/soundmodem/files/patch-p3dmodem_genp3dtbl.c b/comms/soundmodem/files/patch-p3dmodem_genp3dtbl.c
deleted file mode 100644
index 263228f89918..000000000000
--- a/comms/soundmodem/files/patch-p3dmodem_genp3dtbl.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- p3dmodem/genp3dtbl.c.orig	2002-08-09 20:01:52 UTC
-+++ p3dmodem/genp3dtbl.c
-@@ -39,6 +39,8 @@
- #include <float.h>
- #include <stdio.h>
- 
-+unsigned int log_verblevel;
-+
- /* ---------------------------------------------------------------------- */
- 
- extern inline unsigned int hweight32(unsigned int w)
diff --git a/comms/soundmodem/files/patch-p3dmodem_testcrc.c b/comms/soundmodem/files/patch-p3dmodem_testcrc.c
deleted file mode 100644
index 451d41069735..000000000000
--- a/comms/soundmodem/files/patch-p3dmodem_testcrc.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- p3dmodem/testcrc.c.orig	2002-08-09 20:01:52 UTC
-+++ p3dmodem/testcrc.c
-@@ -40,6 +40,8 @@
- 
- #define BLOCKSZ  512
- 
-+unsigned int log_verblevel;
-+
- static int testone(void)
- {
- 	unsigned char data[BLOCKSZ];
diff --git a/comms/soundmodem/files/patch-pammodem_genpamtbl.c b/comms/soundmodem/files/patch-pammodem_genpamtbl.c
deleted file mode 100644
index a3a7cdf0ee64..000000000000
--- a/comms/soundmodem/files/patch-pammodem_genpamtbl.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- pammodem/genpamtbl.c.orig	2002-08-09 20:01:52 UTC
-+++ pammodem/genpamtbl.c
-@@ -38,6 +38,8 @@
- #include <math.h>
- #include <stdio.h>
- 
-+unsigned int log_verblevel;
-+
- /* ---------------------------------------------------------------------- */
- 
- /* 
diff --git a/comms/soundmodem/files/patch-pammodem_pammodem.c b/comms/soundmodem/files/patch-pammodem_pammodem.c
deleted file mode 100644
index ac9ff1c593f3..000000000000
--- a/comms/soundmodem/files/patch-pammodem_pammodem.c
+++ /dev/null
@@ -1,20 +0,0 @@
---- pammodem/pammodem.c.orig	2015-05-04 17:58:30 UTC
-+++ pammodem/pammodem.c
-@@ -160,7 +160,7 @@ struct rxstate {
- 	unsigned int rxptr;
- };
- 
--extern inline int rxgsfir(const int16_t *buf, const int *coeff)
-+inline int rxgsfir(const int16_t *buf, const int *coeff)
- {
- 	unsigned int i;
- 	int s;
-@@ -207,7 +207,7 @@ static void rxrewindsamples(struct rxsta
- 	rx->rxphase -= ph;
- }
- 
--only_inline int calcsync(int *toten, int *corren, int16_t *samples)
-+inline int calcsync(int *toten, int *corren, int16_t *samples)
- {
- 	const int *tr = trainsyms;
- 	unsigned int i;
diff --git a/comms/soundmodem/files/patch-pskmodem_genpsktbl.c b/comms/soundmodem/files/patch-pskmodem_genpsktbl.c
deleted file mode 100644
index 887e925401bf..000000000000
--- a/comms/soundmodem/files/patch-pskmodem_genpsktbl.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- pskmodem/genpsktbl.c.orig	2002-08-09 20:01:52 UTC
-+++ pskmodem/genpsktbl.c
-@@ -40,6 +40,8 @@
- #include <stdio.h>
- #include <string.h>
- 
-+unsigned int log_verblevel;
-+
- /* ---------------------------------------------------------------------- */
- 
- /* 
diff --git a/comms/soundmodem/files/patch-soundcard_modem.h b/comms/soundmodem/files/patch-soundcard_modem.h
deleted file mode 100644
index 8e5b1334e71c..000000000000
--- a/comms/soundmodem/files/patch-soundcard_modem.h
+++ /dev/null
@@ -1,18 +0,0 @@
---- soundcard/modem.h.orig	2015-05-04 17:48:03 UTC
-+++ soundcard/modem.h
-@@ -79,11 +79,15 @@ typedef unsigned long long /* deduced */
- 
- /* ---------------------------------------------------------------------- */
- 
-+#if __clang__ > 0
-+#define only_inline inline
-+#else
- #if __GNUC__ < 5
- #define only_inline extern inline
- #else
- #define only_inline inline
- #endif
-+#endif
- 
- struct modemchannel;
- 
diff --git a/comms/soundmodem/files/patch-soundcard_ptt.c b/comms/soundmodem/files/patch-soundcard_ptt.c
deleted file mode 100644
index 5e84d638c27e..000000000000
--- a/comms/soundmodem/files/patch-soundcard_ptt.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- soundcard/ptt.c.orig	2014-09-01 16:22:57 UTC
-+++ soundcard/ptt.c
-@@ -250,7 +250,7 @@ int pttinit(struct pttio *state, const c
- 		return 0;
- 	}
- 	logprintf(MLOG_INFO, "Opening PTT device \"%s\"\n", path);
--	if ((fd = open(path, O_RDWR, 0)) < 0) {
-+	if ((fd = open(path, O_RDWR|O_NONBLOCK, 0)) < 0) {
- 		logprintf(MLOG_ERROR, "Cannot open PTT device \"%s\"\n", path);
- 		return -1;
- 	}
diff --git a/comms/soundmodem/files/patch-soundcard_simd.h b/comms/soundmodem/files/patch-soundcard_simd.h
deleted file mode 100644
index 389993db95c2..000000000000
--- a/comms/soundmodem/files/patch-soundcard_simd.h
+++ /dev/null
@@ -1,13 +0,0 @@
---- soundcard/simd.h.orig	2015-05-04 17:48:55 UTC
-+++ soundcard/simd.h
-@@ -54,6 +54,10 @@
- 
- #if !defined(USEMMX) && !defined(USEVIS)
- 
-+#if __clang__ > 0
-+#define only_inline inline
-+#endif
-+
- only_inline void initsimd(int enable)
- {
- }
diff --git a/comms/soundmodem/files/patch-soundcard_winlog.c b/comms/soundmodem/files/patch-soundcard_winlog.c
deleted file mode 100644
index f28e48cc0604..000000000000
--- a/comms/soundmodem/files/patch-soundcard_winlog.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- soundcard/winlog.c.orig	2002-12-31 11:30:52 UTC
-+++ soundcard/winlog.c
-@@ -44,7 +44,7 @@
- 
- /* ---------------------------------------------------------------------- */
- 
--unsigned int log_verblevel = 0;
-+extern unsigned int log_verblevel = 0;
- static HANDLE logh = NULL;
- 
- /* ---------------------------------------------------------------------- */
diff --git a/comms/soundmodem/files/soundmodem.in b/comms/soundmodem/files/soundmodem.in
deleted file mode 100644
index 12eebb869868..000000000000
--- a/comms/soundmodem/files/soundmodem.in
+++ /dev/null
@@ -1,39 +0,0 @@
-#!/bin/sh
-
-# $FreeBSD$
-#
-# PROVIDE: soundmodem
-# REQUIRE: LOGIN
-# KEYWORD: shutdown
-#
-# Add these lines to /etc/rc.conf.local or /etc/rc.conf
-# to enable this service:
-#
-# soundmodem_enable (bool):	Set to NO by default.
-#				Set it to YES to enable soundmodem.
-# soundmodem_config (path):	Set to %%PREFIX%%/etc/soundmodem.conf
-#				by default.
-
-. /etc/rc.subr
-
-name=soundmodem
-rcvar=soundmodem_enable
-load_rc_config $name
-
-: ${soundmodem_enable:="NO"}
-: ${soundmodem_config:="%%PREFIX%%/etc/soundmodem.conf"}
-
-command=%%PREFIX%%/sbin/${name}
-command_args="$soundmodem_config --daemonize"
-stop_cmd=soundmodem_stop
-
-required_files=%%PREFIX%%/etc/soundmodem.conf
-
-soundmodem_stop()
-{
-	echo "Stopping soundmodem."
-	killall soundmodem
-	return 0
-}
-
-run_rc_command "$1"
diff --git a/comms/soundmodem/pkg-descr b/comms/soundmodem/pkg-descr
deleted file mode 100644
index 5faa9c82a883..000000000000
--- a/comms/soundmodem/pkg-descr
+++ /dev/null
@@ -1,3 +0,0 @@
-soundmodem Tom's userland modem on FreeBSD
-
-WWW: http://gna.org/projects/soundmodem
diff --git a/comms/soundmodem/pkg-plist b/comms/soundmodem/pkg-plist
deleted file mode 100644
index ac9b583131fd..000000000000
--- a/comms/soundmodem/pkg-plist
+++ /dev/null
@@ -1,8 +0,0 @@
-bin/soundmodemconfig
-sbin/soundmodem
-include/modem.h
-include/simd.h
-share/locale/fr/LC_MESSAGES/soundmodem.mo
-share/locale/sv/LC_MESSAGES/soundmodem.mo
-man/man8/soundmodem.8.gz
-man/man8/soundmodemconfig.8.gz
diff --git a/converters/Makefile b/converters/Makefile
index 6eb250b3fc6b..6fb77f4d3cdd 100644
--- a/converters/Makefile
+++ b/converters/Makefile
@@ -134,7 +134,6 @@
     SUBDIR += p5-XML-WBXML
     SUBDIR += p5-bsdconv
     SUBDIR += p5-plutil
-    SUBDIR += pdf2djvu
     SUBDIR += pear-Services_JSON
     SUBDIR += pecl-fribidi
     SUBDIR += pecl-igbinary
diff --git a/converters/pdf2djvu/Makefile b/converters/pdf2djvu/Makefile
deleted file mode 100644
index a025df4188ee..000000000000
--- a/converters/pdf2djvu/Makefile
+++ /dev/null
@@ -1,32 +0,0 @@
-# Created by: Denise H. G. <darcsis@gmail.com>
-# $FreeBSD$
-
-PORTNAME=	pdf2djvu
-PORTVERSION=	0.7.21
-PORTREVISION=	6
-CATEGORIES=	converters
-MASTER_SITES=	https://bitbucket.org/jwilk/pdf2djvu/downloads/
-
-MAINTAINER=	darcsis@gmail.com
-COMMENT=	Pdf2djvu creates DjVu files from PDF files
-
-LICENSE=	GPLv2
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${LOCALBASE}/include/pstreams/pstream.h:devel/pstreams
-LIB_DEPENDS=	libpoppler.so:graphics/poppler \
-		libdjvulibre.so:graphics/djvulibre
-
-GNU_CONFIGURE=	yes
-USES=		compiler:c++11-lang gmake pkgconfig tar:xz
-
-PLIST_FILES=	bin/pdf2djvu man/man1/pdf2djvu.1.gz
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${STAGEDIR}${PREFIX}/bin
-	${INSTALL_MAN}  ${WRKSRC}/doc/${PORTNAME}.1 ${STAGEDIR}${MANPREFIX}/man/man1
-
-.include <bsd.port.mk>
diff --git a/converters/pdf2djvu/distinfo b/converters/pdf2djvu/distinfo
deleted file mode 100644
index 15a633226148..000000000000
--- a/converters/pdf2djvu/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (pdf2djvu-0.7.21.tar.xz) = 12d480cc3ce2369e1f1b39b7f5e6fbb44351d8b07861295d34e6978f58b687b9
-SIZE (pdf2djvu-0.7.21.tar.xz) = 229020
diff --git a/converters/pdf2djvu/pkg-descr b/converters/pdf2djvu/pkg-descr
deleted file mode 100644
index ae45f26e27c2..000000000000
--- a/converters/pdf2djvu/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-pdf2djvu creates DjVu files from PDF files. It's able to extract:
-graphics, text layer, hyperlinks, document outline (bookmarks), and
-metadata.
-
-WWW: http://jwilk.net/software/pdf2djvu
diff --git a/databases/Makefile b/databases/Makefile
index 81187be02788..2e69ff331d2b 100644
--- a/databases/Makefile
+++ b/databases/Makefile
@@ -16,8 +16,6 @@
     SUBDIR += adodb5
     SUBDIR += akonadi
     SUBDIR += akonadi-kde4
-    SUBDIR += animenfo-client
-    SUBDIR += animenfo-client-gtk
     SUBDIR += apq
     SUBDIR += apq-mysql
     SUBDIR += apq-odbc
@@ -887,8 +885,6 @@
     SUBDIR += qt5-sqldrivers-sqlite3
     SUBDIR += qt5-sqldrivers-tds
     SUBDIR += radix.v2
-    SUBDIR += rdb
-    SUBDIR += rdfdb
     SUBDIR += recutils
     SUBDIR += redigo
     SUBDIR += redis
@@ -896,8 +892,6 @@
     SUBDIR += redis_exporter
     SUBDIR += redisdesktopmanager
     SUBDIR += retcl
-    SUBDIR += riak
-    SUBDIR += riak2
     SUBDIR += rocksdb
     SUBDIR += rocksdb-lite
     SUBDIR += rrdman
@@ -906,7 +900,6 @@
     SUBDIR += rrdtool12
     SUBDIR += ruby-bdb
     SUBDIR += ruby-gdbm
-    SUBDIR += ruby-mysql
     SUBDIR += ruby-odbc
     SUBDIR += ruby-qdbm
     SUBDIR += ruby-tokyocabinet
diff --git a/databases/animenfo-client-gtk/Makefile b/databases/animenfo-client-gtk/Makefile
deleted file mode 100644
index a5467b8b6262..000000000000
--- a/databases/animenfo-client-gtk/Makefile
+++ /dev/null
@@ -1,28 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	animenfo
-PORTVERSION=	20020819
-PORTREVISION=	11
-CATEGORIES=	databases
-MASTER_SITES=	http://www.animenfo.com/extension/files/
-PKGNAMESUFFIX=	-client-gui-gtk${PKGNAMESUFFIX2}
-DISTNAME=	${PORTNAME}-client-gui-gtk
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	AnimeNfo client with GTK support
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-USES=		pkgconfig gettext gmake tar:tgz
-USE_GNOME=	gtk20
-GNU_CONFIGURE=	yes
-CPPFLAGS+=	-I${LOCALBASE}/include
-CFLAGS+=	${CPPFLAGS}
-LDFLAGS+=	-L${LOCALBASE}/lib
-PLIST_FILES=	bin/animenfo-client-gtk
-
-.include <bsd.port.mk>
diff --git a/databases/animenfo-client-gtk/distinfo b/databases/animenfo-client-gtk/distinfo
deleted file mode 100644
index 144e7d3046a4..000000000000
--- a/databases/animenfo-client-gtk/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (animenfo-client-gui-gtk.tgz) = fba135678b1bf02392a4778608cc9407ae59b316c7b15a524a64be1a76137f67
-SIZE (animenfo-client-gui-gtk.tgz) = 62379
diff --git a/databases/animenfo-client-gtk/files/patch-socket.c b/databases/animenfo-client-gtk/files/patch-socket.c
deleted file mode 100644
index fb1c5d858e6a..000000000000
--- a/databases/animenfo-client-gtk/files/patch-socket.c
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/socket.c.orig	Fri Aug 16 03:54:46 2002
-+++ src/socket.c	Sun May 23 10:28:29 2004
-@@ -5,6 +5,7 @@
- #include <sys/socket.h>
- #include <errno.h>
- #include <fcntl.h>
-+#include <sys/time.h>
- 
- #include "socket.h"
- #include "definition.h"
diff --git a/databases/animenfo-client-gtk/pkg-descr b/databases/animenfo-client-gtk/pkg-descr
deleted file mode 100644
index 3f79007c3ceb..000000000000
--- a/databases/animenfo-client-gtk/pkg-descr
+++ /dev/null
@@ -1,12 +0,0 @@
-The AnimeNfo client with GTK support.
-
-configuration.txt contains the configuration for server and port.
-It will be read automatically by the program at beginning of execution,
-so you don't have to fill the server and port value every time manually.
-You can modify the configuration.txt file if necessary.
-In order for the configuration.txt to work,
-you have to put it in the same directory as the program.
-
-LICENSE: GPL2 or later
-
-WWW: http://www.animenfo.com/
diff --git a/databases/animenfo-client/Makefile b/databases/animenfo-client/Makefile
deleted file mode 100644
index 333889162449..000000000000
--- a/databases/animenfo-client/Makefile
+++ /dev/null
@@ -1,25 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	animenfo
-PORTVERSION=	20020819
-CATEGORIES=	databases
-MASTER_SITES=	http://www.animenfo.com/extension/files/
-PKGNAMESUFFIX=	-client${PKGNAMESUFFIX2}
-DISTNAME=	${PORTNAME}-client
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	AnimeNfo client
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LICENSE=	GPLv2
-
-USES=		gmake tar:tgz
-PLIST_FILES=	bin/animenfo-client
-
-do-install:
-	@${INSTALL_PROGRAM} ${WRKSRC}/animenfo-client ${STAGEDIR}/${PREFIX}/bin/
-
-.include <bsd.port.mk>
diff --git a/databases/animenfo-client/distinfo b/databases/animenfo-client/distinfo
deleted file mode 100644
index 179ff01388be..000000000000
--- a/databases/animenfo-client/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (animenfo-client.tgz) = 5fbc77c958fe19ba0cd768e9c496816e7dfc32186e6b4ce91eabbbde901675a5
-SIZE (animenfo-client.tgz) = 10300
diff --git a/databases/animenfo-client/files/patch-Makefile b/databases/animenfo-client/files/patch-Makefile
deleted file mode 100644
index f8308b71388a..000000000000
--- a/databases/animenfo-client/files/patch-Makefile
+++ /dev/null
@@ -1,17 +0,0 @@
---- Makefile.orig	2002-08-16 07:20:00.000000000 +0200
-+++ Makefile	2011-06-24 20:13:58.000000000 +0200
-@@ -1,10 +1,10 @@
- # Compiler/Linker
--CC = gcc
--LD = gcc
-+CC ?= gcc
-+LD = ${CC}
- 
- # compiler/linker flags
--CFLAGS = -g -Wall -D_GNU_SOURCE
--LDFLAGS = -g
-+CFLAGS += -g -Wall -D_GNU_SOURCE
-+LDFLAGS += -g
- 
- # files removal
- RM = /bin/rm -f
diff --git a/databases/animenfo-client/files/patch-socket.c b/databases/animenfo-client/files/patch-socket.c
deleted file mode 100644
index d5e0efcdc17f..000000000000
--- a/databases/animenfo-client/files/patch-socket.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- socket.c.orig	Mon Aug 19 07:04:02 2002
-+++ socket.c	Sun Nov  5 09:40:00 2006
-@@ -5,6 +5,8 @@
- #include <sys/socket.h>
- #include <errno.h>
- #include <fcntl.h>
-+#include <sys/time.h>
-+#include <string.h>
- 
- #include "socket.h"
- #include "definition.h"
diff --git a/databases/animenfo-client/pkg-descr b/databases/animenfo-client/pkg-descr
deleted file mode 100644
index f29210a7fe13..000000000000
--- a/databases/animenfo-client/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-The AnimeNfo client
-
-The simplest AnimeNfo client. Written in C.
-Despite being the simplest example of AnimeNfo client,
-all socket operations were done in non-blocking.
-
-LICENSE: GPL2 or later
-
-WWW: http://www.animenfo.com/
diff --git a/databases/rdb/Makefile b/databases/rdb/Makefile
deleted file mode 100644
index 8298f3eadb09..000000000000
--- a/databases/rdb/Makefile
+++ /dev/null
@@ -1,42 +0,0 @@
-# Created by: Abel Chow <abel_chow@yahoo.com>
-# $FreeBSD$
-
-PORTNAME=	rdb
-PORTVERSION=	2.6d
-CATEGORIES=	databases
-MASTER_SITES=	ftp://ftp.sunet.se/pub/unix/databases/flat-file/RDB/
-DISTNAME=	RDB-${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Fast, portable, relational database management system
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-USES=		perl5 shebangfix
-SHEBANG_FILES=	${BINFILES}
-NO_BUILD=	yes
-NO_ARCH=	yes
-WRKSRC=		${WRKDIR}/rdb
-
-BINFILES=	column compute dataent etbl headchg jointbl lst2tbl \
-		mergetbl mktbl ptbl rdb rdbt repair reporttbl row search \
-		sorttbl subtotal summ tbl2lst uniqtbl valid
-
-PORTDOCS=	RDB.pln.noM.gz RDB.ps.gz rdbi.doc
-
-OPTIONS_DEFINE=	DOCS
-
-do-install:
-.for binfile in ${BINFILES}
-	${INSTALL_SCRIPT} ${WRKSRC}/${binfile} ${STAGEDIR}${PREFIX}/bin
-.endfor
-
-do-install-DOCS-on:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-.for docfile in ${PORTDOCS}
-	${INSTALL_DATA} ${WRKSRC}/doc/${docfile} ${STAGEDIR}${DOCSDIR}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/databases/rdb/distinfo b/databases/rdb/distinfo
deleted file mode 100644
index 6e43545f20bc..000000000000
--- a/databases/rdb/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (RDB-2.6d.tar.gz) = d501df97b989949cea1867ed171cffaa7a3d08a6f840fac4c6411a25d3b47996
-SIZE (RDB-2.6d.tar.gz) = 214540
diff --git a/databases/rdb/files/patch-rdb b/databases/rdb/files/patch-rdb
deleted file mode 100644
index 8c22599c7568..000000000000
--- a/databases/rdb/files/patch-rdb
+++ /dev/null
@@ -1,14 +0,0 @@
-*** rdb~	Wed Jul 16 10:23:13 1997
---- rdb	Wed Feb  9 20:01:38 2000
-***************
-*** 155,158 ****
-  Jones   XY      77    47
-  EOF
-  $helpinfo .= "\n$RCS_ID\n" ;
-! system "echo \"$helpinfo\" | less" ;
---- 155,159 ----
-  Jones   XY      77    47
-  EOF
-  $helpinfo .= "\n$RCS_ID\n" ;
-! $pager = $ENV{'PAGER'} ? $ENV{'PAGER'} : "more";
-! system "echo \"$helpinfo\" | $pager" ;
diff --git a/databases/rdb/pkg-descr b/databases/rdb/pkg-descr
deleted file mode 100644
index ad6fcfe9bee8..000000000000
--- a/databases/rdb/pkg-descr
+++ /dev/null
@@ -1,14 +0,0 @@
-     RDB is a fast, portable, relational database management system
-without arbitrary limits, (other than memory and processor speed) that
-runs under, and interacts with, the UNIX Operating system.
-     It uses the Operator/Stream DBMS paradigm described in "Unix
-Review", March, 1991, page 24, entitled "A 4GL Language".  There are a
-number of "operators" that each perform a unique function on the data.
-The "stream" is supplied by the UNIX Input/Output redirection mechanism.
-Therefore each operator processes some data and then passes it along to
-the next operator via the UNIX pipe function. This is very efficient as
-UNIX pipes are implemented in memory (at least in versions of UNIX at
-RAND).	RDB is compliant with the "Relational Model".
-     The data is contained in regular UNIX ASCII files, and so can be
-manipulated by regular UNIX utilities, e.g. ls, wc, mv, cp, cat, more,
-less, editors like the RAND editor 'e', head, RCS, etc.
diff --git a/databases/rdb/pkg-plist b/databases/rdb/pkg-plist
deleted file mode 100644
index 52ebb4bcb329..000000000000
--- a/databases/rdb/pkg-plist
+++ /dev/null
@@ -1,22 +0,0 @@
-bin/column
-bin/compute
-bin/dataent
-bin/etbl
-bin/headchg
-bin/jointbl
-bin/lst2tbl
-bin/mergetbl
-bin/mktbl
-bin/ptbl
-bin/rdb
-bin/rdbt
-bin/repair
-bin/reporttbl
-bin/row
-bin/search
-bin/sorttbl
-bin/subtotal
-bin/summ
-bin/tbl2lst
-bin/uniqtbl
-bin/valid
diff --git a/databases/rdfdb/Makefile b/databases/rdfdb/Makefile
deleted file mode 100644
index 829805336d35..000000000000
--- a/databases/rdfdb/Makefile
+++ /dev/null
@@ -1,42 +0,0 @@
-# Created by: Philip Jenvey <pjenvey@turntables.org>
-# $FreeBSD$
-
-PORTNAME=	rdfdb
-PORTVERSION=	0.46
-PORTREVISION=	4
-CATEGORIES=	databases
-MASTER_SITES=	http://www.guha.com/
-DISTNAME=	rdfdb_src
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Lightweight RDF database
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-USERS=	rdfdb
-GROUPS=	rdfdb
-
-WRKSRC=		${WRKDIR}/rdfdb
-USES=		bdb gmake
-MAKEFILE=	makefile
-ALL_TARGET=
-CFLAGS+=	-Wno-return-type
-SUB_LIST+=	RDFDB_PORT="${RDFDB_PORT}" RDFDB_DIR="${RDFDB_DIR}"
-USE_RC_SUBR=	rdfdb-server
-
-RDFDB_PORT?=	7001
-
-PLIST_FILES=	bin/rdfdb
-
-post-patch:
-	@${REINPLACE_CMD} -e 's,%%LOCALBASE%%,${LOCALBASE},g' \
-		-e 's,%%BDB_INCLUDE_DIR%%,${BDB_INCLUDE_DIR},g'\
-		-e 's,%%BDB_LIB_NAME%%,${BDB_LIB_NAME},g' \
-		${WRKSRC}/makefile
-
-do-install:
-	${INSTALL_PROGRAM} ${WRKSRC}/rdfdb ${STAGEDIR}${PREFIX}/bin
-
-.include <bsd.port.mk>
diff --git a/databases/rdfdb/distinfo b/databases/rdfdb/distinfo
deleted file mode 100644
index b21ab4222dd9..000000000000
--- a/databases/rdfdb/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (rdfdb_src.tar.gz) = 791a213001bf000c851fc4f835b018900c85b9a271490af7f41e807caf745d78
-SIZE (rdfdb_src.tar.gz) = 154218
diff --git a/databases/rdfdb/files/patch-librdf_db.c b/databases/rdfdb/files/patch-librdf_db.c
deleted file mode 100644
index 28f7c9bfc4dd..000000000000
--- a/databases/rdfdb/files/patch-librdf_db.c
+++ /dev/null
@@ -1,14 +0,0 @@
---- librdf/db.c.orig	Tue Oct  3 20:23:27 2000
-+++ librdf/db.c	Mon Jan  2 12:06:39 2006
-@@ -169,7 +169,11 @@
-     }
-   }
- 
-+#if DB_VERSION_MAJOR * 10 + DB_VERSION_MINOR > 40
-+  err = (*db)->open(*db, NULL, name, NULL, type, DB_CREATE | DB_THREAD , 0664);
-+#else
-   err = (*db)->open(*db, name, NULL, type, DB_CREATE | DB_THREAD , 0664);
-+#endif
-   if (err) {
-     printf("Problems opening %s : %s\n", name, db_strerror(err));
-     return err;
diff --git a/databases/rdfdb/files/patch-librdf_rdflib.c b/databases/rdfdb/files/patch-librdf_rdflib.c
deleted file mode 100644
index 49cdc0349ac9..000000000000
--- a/databases/rdfdb/files/patch-librdf_rdflib.c
+++ /dev/null
@@ -1,11 +0,0 @@
---- librdf/rdflib.c.orig	Wed Oct  4 02:00:07 2000
-+++ librdf/rdflib.c	Thu Aug 22 02:05:39 2002
-@@ -194,2 +194,4 @@
- 
-+extern FILE *rdfpGetFile(RDF_Parser rdfp);
-+
- RDF_Result 
-@@ -200,3 +202,2 @@
-                        RDF_ASSERT, getFileCode(rdfp)) && (rdfpGetFile(rdfp))) {
--    extern FILE *rdfpGetFile(RDF_Parser rdfp);
-     FILE *file = rdfpGetFile(rdfp);
diff --git a/databases/rdfdb/files/patch-makefile b/databases/rdfdb/files/patch-makefile
deleted file mode 100644
index 331f5bd91b83..000000000000
--- a/databases/rdfdb/files/patch-makefile
+++ /dev/null
@@ -1,14 +0,0 @@
---- makefile.orig	Sun Aug 20 15:48:46 2000
-+++ makefile	Sat Jun  8 20:25:04 2002
-@@ -1,7 +1,7 @@
--CC = gcc -g 
--INCLUDES = -I /usr/local/BerkeleyDB.3.1/include -I expat/xmltok -I expat/xmlparse
--LIBS     = -ldb -lpthread
--CPPFLAGS = $(INCLUDES) -L  /usr/local/BerkeleyDB.3.1/lib/
-+CC ?= gcc -g 
-+INCLUDES = -I %%BDB_INCLUDE_DIR%% -I expat/xmltok -I expat/xmlparse
-+LIBS     = -l%%BDB_LIB_NAME%% -lpthread
-+CPPFLAGS += ${CFLAGS} $(INCLUDES) -L  %%LOCALBASE%%/lib
- 
- OBJS =  utils/hash.o \
- 	utils/utils.o \
diff --git a/databases/rdfdb/files/patch-query-processQuery.c b/databases/rdfdb/files/patch-query-processQuery.c
deleted file mode 100644
index 32d592b3a49c..000000000000
--- a/databases/rdfdb/files/patch-query-processQuery.c
+++ /dev/null
@@ -1,10 +0,0 @@
---- query/processQuery.c.orig	Mon Sep 18 17:09:01 2000
-+++ query/processQuery.c	Thu Dec 27 21:18:54 2001
-@@ -21,6 +21,7 @@
- #include "../utils/utils.h"
- #include "queryParser.h"
- #include <stdio.h>
-+#include <time.h>
- extern int       DB_Flush (const char* db) ;
- extern int gVerbose;
- extern int gAssertionCount;
diff --git a/databases/rdfdb/files/rdfdb-server.in b/databases/rdfdb/files/rdfdb-server.in
deleted file mode 100644
index a3ccd8132b67..000000000000
--- a/databases/rdfdb/files/rdfdb-server.in
+++ /dev/null
@@ -1,22 +0,0 @@
-#!/bin/sh
-
-RDFDB_DIR=%%RDFDB_DIR%%
-RDFDB_PORT=%%RDFDB_PORT%%
-export RDFDB_DIR RDFDB_PORT
-
-case "$1" in
-	start)
-		if [ -x %%PREFIX%%/bin/rdfdb ]; then
-			su rdfdb -c 'exec %%PREFIX%%/bin/rdfdb > /dev/null &' && echo -n ' rdfdb'
-		fi
-		;;
-	stop)
-		/usr/bin/killall rdfdb > /dev/null 2>&1 && echo -n ' rdfdb'
-		;;
-	*)
-		echo ""
-		echo "Usage: `basename $0` { start | stop }"
-		echo ""
-		exit 64
-		;;
-esac
diff --git a/databases/rdfdb/pkg-descr b/databases/rdfdb/pkg-descr
deleted file mode 100644
index 8d3715ecc437..000000000000
--- a/databases/rdfdb/pkg-descr
+++ /dev/null
@@ -1,21 +0,0 @@
-R.V. Guha's rdfDB. Intended to be a simple, scalable, open-source
-database for RDF. Written in C and based on top of the Sleepycat
-Berkeley Database, it supports interrogation via TCP/IP sockets,
-meaning integration is possible with any programming language.
-
-rdfDB uses a high level SQLish query language. The data is modelled as
-a directed labelled graph (RDF).
-
-The goals of this project are to build a database that is capable of:
-
-   1. Supporting a graph oriented API via a textual query language ala
-      SQL.
-   2. Load/Reload an RDF file from a url into the database
-   3. Scalable to millions of nodes and triples.
-   4. Provide support for RDF Schemas.
-   5. Provide support for some basic forms of inferencing.
-   6. Provide both C and Perl access to the database.
-   7. The Perl philosophy applies : Simple things should be simple and
-      complex things should be possible.
-
-WWW: http://www.guha.com/rdfdb/
diff --git a/databases/riak/Makefile b/databases/riak/Makefile
deleted file mode 100644
index bfea7f5a21e8..000000000000
--- a/databases/riak/Makefile
+++ /dev/null
@@ -1,93 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	riak
-PORTVERSION=	1.4.12
-PORTREVISION=	3
-CATEGORIES=	databases
-MASTER_SITES=	http://s3.amazonaws.com/downloads.basho.com/riak/${PORTVERSION:R}/${PORTVERSION}/ \
-		http://downloads.basho.com.s3.amazonaws.com/riak/${PORTVERSION:R}/${PORTVERSION}/
-
-MAINTAINER=	robak@FreeBSD.org
-COMMENT=	Open source, distributed, noSQL database
-
-LICENSE=	APACHE20
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${LOCALBASE}/lib/erlang15/bin/erlc:lang/erlang-runtime15
-
-USES=		gmake readline shebangfix
-SHEBANG_FILES=	deps/eper/priv/bin/dtop \
-		deps/eper/priv/bin/gperf \
-		deps/eper/priv/bin/ntop \
-		deps/eper/priv/bin/redbug \
-		deps/eper/priv/bin/sherk
-USE_RC_SUBR=	riak
-
-PLIST=		${WRKDIR}/pkg-plist
-PLIST_SUB+=	GROUPS=${GROUPS} \
-		RIAK_CONFDIR=${RIAK_CONFDIR} \
-		RIAK_DBDIR=${RIAK_DBDIR} \
-		RIAK_HOMEDIR=${RIAK_HOMEDIR} \
-		RIAK_LIBDIR=${RIAK_LIBDIR} \
-		RIAK_LOGDIR=${RIAK_LOGDIR} \
-		USERS=${USERS}
-
-USERS=		riak
-GROUPS=		riak
-
-RIAK_CONFDIR?=	${PREFIX}/etc/${PORTNAME}
-RIAK_LOGDIR?=	/var/log/${PORTNAME}
-RIAK_DBDIR?=	/var/db/${PORTNAME}
-RIAK_LIBDIR?=	${PREFIX}/lib/${PORTNAME}/lib
-RIAK_HOMEDIR?=	${PREFIX}/lib/${PORTNAME}
-
-ALL_TARGET=	rel
-MAKE_JOBS_UNSAFE=yes
-MAKE_ENV=	PATH=${LOCALBASE}/lib/erlang15/bin:${PATH}
-
-BROKEN_aarch64=		Does not compile: error: Unknown CPU architecture
-BROKEN_powerpc64=	Does not compile: error: Unknown CPU architecture
-BROKEN_sparc64=		Does not compile: Please implement AtomicPointer for this platform
-
-.include <bsd.port.pre.mk>
-
-post-patch:
-	@${REINPLACE_CMD} 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/rel/vars.config
-
-pre-install:
-	${RM} ${PLIST}
-	${CAT} ${PKGDIR}/pkg-plist >> ${PLIST}
-	(cd ${WRKSRC}/rel/${PORTNAME}; ${FIND} releases -type f \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn | ${SED} -e 's/^/lib\//' \
-		| ${AWK} '{print "lib/riak/"$$2 }' >> ${PLIST})
-	(cd ${WRKSRC}/rel/${PORTNAME}; ${FIND} erts-* -type f \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn  \
-		| ${AWK} '{print "lib/riak/"$$2 }' >> ${PLIST})
-	(cd ${WRKSRC}/rel; ${FIND} ${PORTNAME}/lib -type f \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn | ${SED} -e 's/^/lib\//' \
-		| ${AWK} '{print "lib/"$$2 }' >> ${PLIST})
-	${ECHO} "@owner" >> ${PLIST}
-	${ECHO} "@group" >> ${PLIST}
-
-do-install:
-.for d in ${RIAK_CONFDIR} ${RIAK_LOGDIR} ${RIAK_DBDIR} ${RIAK_LIBDIR} ${RIAK_HOMEDIR}
-	${MKDIR} ${STAGEDIR}${d}
-.endfor
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/vm.args ${STAGEDIR}${RIAK_CONFDIR}/vm.args.sample
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/app.config ${STAGEDIR}${RIAK_CONFDIR}/app.config.sample
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/cert.pem ${STAGEDIR}${RIAK_CONFDIR}/cert.pem.sample
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/key.pem ${STAGEDIR}${RIAK_CONFDIR}/key.pem.sample
-	(cd ${WRKSRC}/rel/riak/lib/ && ${COPYTREE_BIN} . ${STAGEDIR}${RIAK_LIBDIR})
-	(cd ${WRKSRC}/rel/riak/bin/ && ${COPYTREE_BIN} . ${STAGEDIR}${PREFIX}/sbin/)
-	(cd ${WRKSRC}/rel/riak/lib/basho-patches && ${COPYTREE_SHARE} . ${STAGEDIR}${RIAK_LIBDIR}/basho-patches)
-	(cd ${WRKSRC}/rel/riak/releases && ${COPYTREE_SHARE} . ${STAGEDIR}${RIAK_HOMEDIR}/releases)
-	${CP} -R ${WRKSRC}/rel/riak/erts-* ${STAGEDIR}${RIAK_HOMEDIR}
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak-admin.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak-debug.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/search-cmd.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-
-.include <bsd.port.post.mk>
diff --git a/databases/riak/distinfo b/databases/riak/distinfo
deleted file mode 100644
index 3ac05542d6e3..000000000000
--- a/databases/riak/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (riak-1.4.12.tar.gz) = 2ae63ba183ce457399a21542c75aa6149481c972ebac739a1599e93e81982c91
-SIZE (riak-1.4.12.tar.gz) = 13821609
diff --git a/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-build_detect_platform b/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-build_detect_platform
deleted file mode 100644
index a68984f81012..000000000000
--- a/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-build_detect_platform
+++ /dev/null
@@ -1,29 +0,0 @@
---- deps/eleveldb/c_src/leveldb/build_detect_platform.orig	2014-04-02 12:41:11.174611987 +0000
-+++ deps/eleveldb/c_src/leveldb/build_detect_platform	2014-04-02 12:42:31.766605994 +0000
-@@ -134,7 +134,7 @@
-     true
- else
-     # If -std=c++0x works, use <cstdatomic>.  Otherwise use port_posix.h.
--    $CXX $CFLAGS -std=c++0x -x c++ - -o /dev/null 2>/dev/null  <<EOF
-+    $CXX $CFLAGS -std=c++0x -x c++ - 2>/dev/null  <<EOF
-       #include <cstdatomic>
-       int main() {}
- EOF
-@@ -147,7 +147,7 @@
- 
-     # Test whether Snappy library is installed
-     # http://code.google.com/p/snappy/
--    $CXX $CFLAGS -x c++ - -o /dev/null 2>/dev/null  <<EOF
-+    $CXX $CFLAGS -x c++ - 2>/dev/null  <<EOF
-       #include <snappy.h>
-       int main() {}
- EOF
-@@ -157,7 +157,7 @@
-     fi
- 
-     # Test whether tcmalloc is available
--    $CXX $CFLAGS -x c++ - -o /dev/null -ltcmalloc 2>/dev/null  <<EOF
-+    $CXX $CFLAGS -x c++ - -ltcmalloc 2>/dev/null  <<EOF
-       int main() {}
- EOF
-     if [ "$?" = 0 ]; then
diff --git a/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-db-version_set.cc b/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-db-version_set.cc
deleted file mode 100644
index 3c19c4c2cbee..000000000000
--- a/databases/riak/files/patch-deps-eleveldb-c_src-leveldb-db-version_set.cc
+++ /dev/null
@@ -1,36 +0,0 @@
---- deps/eleveldb/c_src/leveldb/db/version_set.cc.orig	2014-04-02 12:26:08.746672588 +0000
-+++ deps/eleveldb/c_src/leveldb/db/version_set.cc	2014-04-02 12:37:06.719627543 +0000
-@@ -2,10 +2,12 @@
- // Use of this source code is governed by a BSD-style license that can be
- // found in the LICENSE file. See the AUTHORS file for names of contributors.
- 
-+#define __STDC_CONSTANT_MACROS
- #include "db/version_set.h"
- 
- #include <algorithm>
- #include <stdio.h>
-+#include <stdint.h>
- #include "db/filename.h"
- #include "db/log_reader.h"
- #include "db/log_writer.h"
-@@ -53,13 +55,13 @@
- 
- // WARNING: m_OverlappedFiles flags need to match config::kNumOverlapFiles ... until unified
- {
--    {10485760,  262144000,  57671680,      209715200,                0,     300000000, true},
--    {10485760,   82914560,  57671680,      419430400,                0,     209715200, true},
--    {10485760,  314572800,  57671680,     1006632960,        200000000,     314572800, false},
--    {10485760,  419430400,  57671680,     4094304000ULL,    3355443200ULL,  419430400, false},
--    {10485760,  524288000,  57671680,    41943040000ULL,   33554432000ULL,  524288000, false},
--    {10485760,  629145600,  57671680,   419430400000ULL,  335544320000ULL,  629145600, false},
--    {10485760,  734003200,  57671680,  4194304000000ULL, 3355443200000ULL,  734003200, false}
-+    {UINT64_C(10485760), UINT64_C(262144000), INT64_C(57671680), UINT64_C(    209715200), UINT64_C(            0), UINT64_C(300000000), true},
-+    {UINT64_C(10485760), UINT64_C( 82914560), INT64_C(57671680), UINT64_C(    419430400), UINT64_C(            0), UINT64_C(209715200), true},
-+    {UINT64_C(10485760), UINT64_C(314572800), INT64_C(57671680), UINT64_C(   1006632960), UINT64_C(    200000000), UINT64_C(314572800), false},
-+    {UINT64_C(10485760), UINT64_C(419430400), INT64_C(57671680), UINT64_C(   4094304000), UINT64_C(   3355443200), UINT64_C(419430400), false},
-+    {UINT64_C(10485760), UINT64_C(524288000), INT64_C(57671680), UINT64_C(  41943040000), UINT64_C(  33554432000), UINT64_C(524288000), false},
-+    {UINT64_C(10485760), UINT64_C(629145600), INT64_C(57671680), UINT64_C( 419430400000), UINT64_C( 335544320000), UINT64_C(629145600), false},
-+    {UINT64_C(10485760), UINT64_C(734003200), INT64_C(57671680), UINT64_C(4194304000000), UINT64_C(3355443200000), UINT64_C(734003200), false}
- };
- 
- /// ULL above needed to compile on OSX 10.7.3
diff --git a/databases/riak/files/patch-deps-erlang_js-c_src-patches-js-src-config-FreeBSD.mk.patch b/databases/riak/files/patch-deps-erlang_js-c_src-patches-js-src-config-FreeBSD.mk.patch
deleted file mode 100644
index e37e20a60c53..000000000000
--- a/databases/riak/files/patch-deps-erlang_js-c_src-patches-js-src-config-FreeBSD.mk.patch
+++ /dev/null
@@ -1,18 +0,0 @@
---- deps/erlang_js/c_src/patches/js-src-config-FreeBSD.mk.patch.orig    2013-01-29 21:13:01.000000000 +0100
-+++ deps/erlang_js/c_src/patches/js-src-config-FreeBSD.mk.patch 2013-09-12 14:59:29.000000000 +0200
-@@ -1,6 +1,6 @@
- --- c_src.orig/js/src/config/FreeBSD.mk        1969-12-31 19:00:00.000000000 -0500
- +++ c_src/js/src/config/FreeBSD.mk     2011-03-30 20:12:51.000000000 -0400
--@@ -0,0 +1,99 @@
-+@@ -0,0 +1,100 @@
- +# -*- Mode: makefile -*-
- +#
- +# ***** BEGIN LICENSE BLOCK *****
-@@ -46,6 +46,7 @@
- +
- +CC ?= gcc
- +CCC ?= g++
-++LD = $(CC)
- +CFLAGS +=  -Wall -Wno-format
- +OS_CFLAGS = -DXP_UNIX -DSVR4 -DSYSV -D_BSD_SOURCE -DPOSIX_SOURCE -DHAVE_LOCALTIME_R
- +
diff --git a/databases/riak/files/patch-deps-node_package-priv-base-env.sh b/databases/riak/files/patch-deps-node_package-priv-base-env.sh
deleted file mode 100644
index 75c35f00088e..000000000000
--- a/databases/riak/files/patch-deps-node_package-priv-base-env.sh
+++ /dev/null
@@ -1,28 +0,0 @@
---- deps/node_package/priv/base/env.sh.orig	2013-11-08 18:56:54 UTC
-+++ deps/node_package/priv/base/env.sh
-@@ -100,7 +100,7 @@ ping_node() {
- # read/write/delete .pid files during startup/shutdown
- create_pid_dir() {
-     # Validate RUNNER_USER is set and they have permissions to write to /var/run
--    # Don't continue if we've already sudo'd to RUNNER_USER
-+    # Don't continue if we've already su'd to RUNNER_USER
-     if ([ "$RUNNER_USER" ] && [ "x$WHOAMI" != "x$RUNNER_USER" ]); then
-         if [ -w $RUN_DIR ]; then
-             mkdir -p $PID_DIR
-@@ -161,12 +161,13 @@ check_user() {
-     # Validate that the user running the script is the owner of the
-     # RUN_DIR.
-     if ([ "$RUNNER_USER" ] && [ "x$WHOAMI" != "x$RUNNER_USER" ]); then
--        type sudo > /dev/null 2>&1
-+        type su > /dev/null 2>&1
-         if [ "$?" -ne 0 ]; then
--            echoerr "sudo doesn't appear to be installed and your EUID isn't $RUNNER_USER" 1>&2
-+            echoerr "su doesn't appear to be installed and your EUID isn't $RUNNER_USER" 1>&2
-             exit 1
-         fi
--        exec sudo -H -u $RUNNER_USER -i $RUNNER_SCRIPT_DIR/$RUNNER_SCRIPT $@
-+        ESCAPED_ARGS=`echo "$@" | sed -e 's/\([{}"]\)/\\\\\1/g'`
-+        exec su - $RUNNER_USER -c "$RUNNER_SCRIPT_DIR/$RUNNER_SCRIPT $ESCAPED_ARGS"
-     fi
- }
- 
diff --git a/databases/riak/files/patch-rel-reltool.config b/databases/riak/files/patch-rel-reltool.config
deleted file mode 100644
index dca083c2447c..000000000000
--- a/databases/riak/files/patch-rel-reltool.config
+++ /dev/null
@@ -1,16 +0,0 @@
---- rel/reltool.config.orig	2013-09-17 20:53:23.000000000 +0200
-+++ rel/reltool.config	2013-09-17 20:55:40.000000000 +0200
-@@ -37,8 +37,12 @@
-        {boot_rel, "riak"},
-        {profile, embedded},
-        {excl_sys_filters, ["^bin/.*",
--                           "^erts.*/bin/(dialyzer|typer)"]},
-+                           "^erts.*/bin/(dialyzer|typer)",
-+                           "^erts.*/bin/(dialyzer|typer)",
-+                           "^erts.*/doc",
-+                           "^erts.*/man"]},
-        {excl_archive_filters, [".*"]},
-+       {app, mnesia, [{incl_app_filters, ["ebin/*"]}]},
-        {app, cluster_info, [{incl_cond, include}]},
-        {app, erlang_js, [{incl_cond, include}]},
-        {app, ebloom, []},
diff --git a/databases/riak/files/patch-rel-vars.config b/databases/riak/files/patch-rel-vars.config
deleted file mode 100644
index c414b6037fa2..000000000000
--- a/databases/riak/files/patch-rel-vars.config
+++ /dev/null
@@ -1,41 +0,0 @@
---- rel/vars.config.orig	2013-08-29 20:13:02.000000000 +0200
-+++ rel/vars.config	2013-09-11 23:04:34.000000000 +0200
-@@ -2,11 +2,12 @@
- %% ex: ft=erlang ts=4 sw=4 et
- 
- %% Platform-specific installation paths
--{platform_bin_dir,  "./bin"}.
--{platform_data_dir, "./data"}.
--{platform_etc_dir,  "./etc"}.
--{platform_lib_dir,  "./lib"}.
--{platform_log_dir,  "./log"}.
-+{platform_bin_dir,  "%%PREFIX%%/sbin"}.
-+{platform_data_dir, "/var/db/riak"}.
-+{platform_etc_dir,  "%%PREFIX%%/etc/riak"}.
-+{platform_base_dir,  "%%PREFIX%%/lib/riak"}.
-+{platform_lib_dir,  "%%PREFIX%%/lib/riak/lib"}.
-+{platform_log_dir,  "/var/log/riak"}.
- 
- %%
- %% etc/app.config
-@@ -47,12 +48,12 @@
- %%
- %% bin/riak
- %%
--{runner_script_dir,  "$(cd ${0%/*} && pwd)"}.
--{runner_base_dir,    "{{runner_script_dir}}/.."}.
--{runner_etc_dir,     "$RUNNER_BASE_DIR/etc"}.
--{runner_log_dir,     "$RUNNER_BASE_DIR/log"}.
--{runner_lib_dir,     "$RUNNER_BASE_DIR/lib"}.
--{runner_patch_dir,   "$RUNNER_BASE_DIR/lib/basho-patches"}.
--{pipe_dir,           "/tmp/$RUNNER_BASE_DIR/"}.
--{runner_user,        ""}.
-+{runner_script_dir,  "{{platform_bin_dir}}"}.
-+{runner_base_dir,    "{{platform_base_dir}}"}.
-+{runner_etc_dir,     "{{platform_etc_dir}}"}.
-+{runner_log_dir,     "{{platform_log_dir}}"}.
-+{runner_lib_dir,     "{{platform_lib_dir}}"}.
-+{runner_patch_dir,   "{{platform_lib_dir}}/basho-patches"}.
-+{pipe_dir,           "/tmp/riak"}.
-+{runner_user,        "riak"}.
- {runner_wait_process, "riak_core_node_watcher"}.
diff --git a/databases/riak/files/riak.in b/databases/riak/files/riak.in
deleted file mode 100644
index 2ab086f60959..000000000000
--- a/databases/riak/files/riak.in
+++ /dev/null
@@ -1,84 +0,0 @@
-#!/bin/sh
-# $FreeBSD$
-
-# PROVIDE: riak
-# REQUIRE: LOGIN cleanvar
-# KEYWORD: shutdown
-
-#
-# Add the following lines to /etc/rc.conf to enable riak:
-# riak_enable (bool):		Set to "NO" by default.
-#				Set it to "YES" to enable riak on boot.
-#
-
-. /etc/rc.subr
-
-name="riak"
-rcvar=riak_enable
-
-pidfile=/var/run/riak/riak.pid
-
-start_cmd="riak_start"
-stop_cmd="riak_stop"
-restart_cdm="riak_restart"
-status_cmd="riak_status"
-command="%%PREFIX%%/sbin/riak"
-
-load_rc_config $name
-
-# Read rc.d config and set defaults
-load_rc_config "$name"
-: ${riak_enable="NO"}
-
-riak_start()
-{
-	echo "Starting Riak."
-	%%PREFIX%%/sbin/riak start
-	return 0
-}
-
-riak_stop()
-{
-	echo "Stopping Riak processes"
-	%%PREFIX%%/sbin/riak stop
-	killall -9 epmd
-	return 0
-}
-
-riak_restart()
-{
-	riak_stop
-	riak_start
-	return 0
-}
-
-riak_status()
-{
-	if riak_running; then
-		echo "Riak is running."
-		return 0
-	else
-		echo "Riak is not running"
-		return 1
-	fi
-}
-
-riak_running()
-{
-	local pid result ps
-	pid=`%%PREFIX%%/sbin/riak getpid`
-	result=`echo $?`
-	if [ "$result" == 0 ]; then
-		ps=`ps -waux | grep ${pid} | grep riak`
-		result=`echo $?`
-		if [ "$result" ]; then
-			return 0
-		else
-			return 1
-		fi
-	else
-		return 1
-	fi
-}
-
-run_rc_command "$1"
diff --git a/databases/riak/pkg-descr b/databases/riak/pkg-descr
deleted file mode 100644
index 1315664853f7..000000000000
--- a/databases/riak/pkg-descr
+++ /dev/null
@@ -1,6 +0,0 @@
-Riak is a distributed database designed for maximum availability:
-so long as your client can reach one server, it should be able to
-write data. In most failure scenarios the data you want to read
-should be available, albeit possibly stale.
-
-WWW: http://basho.com/riak
diff --git a/databases/riak/pkg-plist b/databases/riak/pkg-plist
deleted file mode 100644
index 85c203663bd8..000000000000
--- a/databases/riak/pkg-plist
+++ /dev/null
@@ -1,19 +0,0 @@
-sbin/riak
-sbin/riak-admin
-sbin/riak-debug
-sbin/search-cmd
-man/man1/riak-admin.1.gz
-man/man1/riak-debug.1.gz
-man/man1/riak.1.gz
-man/man1/search-cmd.1.gz
-@sample %%ETCDIR%%/vm.args.sample
-@sample %%ETCDIR%%/app.config.sample
-@sample %%ETCDIR%%/cert.pem.sample
-@sample %%ETCDIR%%/key.pem.sample
-@dir %%RIAK_CONFDIR%%
-@owner %%USERS%%
-@group %%GROUPS%%
-@dir %%RIAK_DBDIR%%
-@dir %%RIAK_HOMEDIR%%
-@dir %%RIAK_LIBDIR%%
-@dir %%RIAK_LOGDIR%%
diff --git a/databases/riak2/Makefile b/databases/riak2/Makefile
deleted file mode 100644
index f8a37f2a3b14..000000000000
--- a/databases/riak2/Makefile
+++ /dev/null
@@ -1,109 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	riak2
-PORTVERSION=	2.1.1
-PORTREVISION=	6
-CATEGORIES=	databases
-MASTER_SITES=	http://s3.amazonaws.com/downloads.basho.com/riak/${PORTVERSION:R}/${PORTVERSION}/ \
-	http://downloads.basho.com.s3.amazonaws.com/riak/${PORTVERSION:R}/${PORTVERSION}/ \
-	http://s3.amazonaws.com/files.basho.com/solr/:solr \
-	http://s3.amazonaws.com/files.basho.com/yokozuna/:yokozuna
-DISTNAME=	riak-${PORTVERSION}
-DISTFILES=	${DISTNAME}${EXTRACT_SUFX} \
-	solr-4.7.0-yz-1.tgz:solr \
-	yokozuna-1.jar:yokozuna \
-	yz_monitor-1.jar:yokozuna
-EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX} solr-4.7.0-yz-1.tgz
-
-MAINTAINER=	wg@FreeBSD.org
-COMMENT=	Riak is an open source, distributed, noSQL database
-
-LICENSE=	APACHE20
-
-BROKEN=		No public distfiles
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${LOCALBASE}/lib/riak-erlang/bin/erlc:lang/erlang-riak
-
-USES=		gmake readline shebangfix
-SHEBANG_FILES=	deps/eper/priv/bin/* \
-		../solr-4.7.0-yz-1/example/etc/create-solrtest.keystore.sh
-USE_RC_SUBR=	riak
-USE_GCC=	yes
-
-BROKEN_i386=		does not build
-BROKEN_sparc64=		does not build: Please implement AtomicPointer for this platform
-NOT_FOR_ARCHS=		aarch64 powerpc64
-NOT_FOR_ARCHS_REASON=	does not build: error: Unknown CPU architecture
-
-USERS=		riak
-GROUPS=		riak
-
-RIAK_CONFDIR?=	${PREFIX}/etc/riak
-RIAK_DBDIR?=	/var/db/riak
-RIAK_HOMEDIR?=	${PREFIX}/lib/riak
-RIAK_LIBDIR?=	${PREFIX}/lib/riak/lib
-RIAK_LOGDIR?=	/var/log/riak
-
-PLIST_SUB+=	RIAK_CONFDIR=${RIAK_CONFDIR} \
-	RIAK_DBDIR=${RIAK_DBDIR} \
-	RIAK_HOMEDIR=${RIAK_HOMEDIR} \
-	RIAK_LIBDIR=${RIAK_LIBDIR} \
-	RIAK_LOGDIR=${RIAK_LOGDIR} \
-	USERS=${USERS} \
-	GROUPS=${GROUPS}
-
-ALL_TARGET=	rel
-MAKE_JOBS_UNSAFE=yes
-MAKE_ENV=	PATH=${LOCALBASE}/lib/riak-erlang/bin:${PATH}
-
-post-patch:
-	@${REINPLACE_CMD} 's|%%PREFIX%%|${PREFIX}|g' ${WRKSRC}/rel/vars.config
-	@${REINPLACE_CMD} -e 's|%%BUILD_DIR%%|${WRKDIR}|g' \
-		-e 's|%%DISTDIR%%|${DISTDIR}|g' \
-		-e 's|%%YOKOZUNA%%|${WRKSRC}/deps/yokozuna|g' \
-		${WRKSRC}/deps/yokozuna/tools/grab-solr.sh
-
-do-install:
-	${MKDIR} ${STAGEDIR}${RIAK_CONFDIR}
-	${MKDIR} ${STAGEDIR}${RIAK_DBDIR}
-	${MKDIR} ${STAGEDIR}${RIAK_LOGDIR}
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/riak.conf ${STAGEDIR}${RIAK_CONFDIR}/riak.conf.sample
-	${INSTALL_DATA} ${WRKSRC}/rel/riak/etc/solr-log4j.properties ${STAGEDIR}${RIAK_CONFDIR}/solr-log4j.properties.sample
-	(cd ${WRKSRC}/rel/riak/lib/ && ${COPYTREE_BIN} . ${STAGEDIR}${RIAK_LIBDIR})
-	(cd ${WRKSRC}/rel/riak/bin/ && ${COPYTREE_BIN} . ${STAGEDIR}${PREFIX}/sbin/)
-	(cd ${WRKSRC}/rel/riak/lib/basho-patches && ${COPYTREE_SHARE} . ${STAGEDIR}${RIAK_LIBDIR}/basho-patches)
-	(cd ${WRKSRC}/rel/riak/releases && ${COPYTREE_SHARE} . ${STAGEDIR}${RIAK_HOMEDIR}/releases)
-	${CP} -R ${WRKSRC}/rel/riak/erts-* ${STAGEDIR}${RIAK_HOMEDIR}
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak-admin.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/riak-debug.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	${INSTALL_MAN} ${WRKSRC}/doc/man/man1/search-cmd.1.gz ${STAGEDIR}${MANPREFIX}/man/man1/
-	#@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/riak/lib/bitcask-1.7.0/priv/bitcask.so
-	#@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/riak/lib/erlang_js-1.3.0-0-g07467d8/priv/erlang_js_drv.so
-	#@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/riak/lib/syslog-1.0.2/priv/syslog_drv.so
-	#@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/riak/lib/canola-2.0.0-0-g9bdfee8/priv/canola-port
-	#@${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/riak/lib/sext-1.1p3-0-g846b9cc/priv/sext.so
-
-post-install:
-	(cd ${STAGEDIR}${RIAK_HOMEDIR}; ${FIND} releases -type f \
-		| ${SED} -e 's,^\./,,g' \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn | ${SED} -e 's/^/lib\//' \
-		| ${AWK} '{print "lib/riak/"$$2 }' >> ${TMPPLIST})
-	(cd ${STAGEDIR}${RIAK_HOMEDIR}; ${FIND} erts-* -type f \
-		| ${SED} -e 's,^\./,,g' \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn  \
-		| ${AWK} '{print "lib/riak/"$$2 }' >> ${TMPPLIST})
-	(cd ${STAGEDIR}${RIAK_LIBDIR}; ${FIND} . -type f \
-		| ${SED} -e 's,^\./,,g' \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn | ${SED} -e 's/^/lib\//' \
-		| ${AWK} '{print "lib/riak/lib/"$$2 }' >> ${TMPPLIST})
-	(cd ${STAGEDIR}${RIAK_LIBDIR}; ${FIND} . -type d -empty \
-		| ${SED} -e 's,^\./,,g' \
-		| ${AWK} '{print length, $$0}' | ${SORT} -rn | ${SED} -e 's/^/lib\//' \
-		| ${AWK} '{print "@dir lib/riak/lib/"$$2 }' >> ${TMPPLIST})
-	${ECHO} "@owner" >> ${TMPPLIST}
-	${ECHO} "@group" >> ${TMPPLIST}
-
-.include <bsd.port.mk>
diff --git a/databases/riak2/distinfo b/databases/riak2/distinfo
deleted file mode 100644
index b5b80c8063e5..000000000000
--- a/databases/riak2/distinfo
+++ /dev/null
@@ -1,8 +0,0 @@
-SHA256 (riak-2.1.1.tar.gz) = b5414e7bab650862c26fbbad382b81d47135ce55eafd02fdac027d3bff90a5ae
-SIZE (riak-2.1.1.tar.gz) = 18771429
-SHA256 (solr-4.7.0-yz-1.tgz) = 172380c6c334797b4639f7c497a2a34a249efbfd3917106b3662f6b1e8a0352f
-SIZE (solr-4.7.0-yz-1.tgz) = 166999678
-SHA256 (yokozuna-1.jar) = 91a208e1fde1ef2a931f8d14ba150f730c92bc3a7a8e8bce30c6a6b027e18f82
-SIZE (yokozuna-1.jar) = 10645
-SHA256 (yz_monitor-1.jar) = 35c41c103c83452c6377fac42b6c8bb714d2e1e2b8c02053397c0fa2423b694d
-SIZE (yz_monitor-1.jar) = 2661
diff --git a/databases/riak2/files/patch-deps_erlang__js_c__src_patches_js-src-config-FreeBSD.mk.patch b/databases/riak2/files/patch-deps_erlang__js_c__src_patches_js-src-config-FreeBSD.mk.patch
deleted file mode 100644
index ae74902fc19b..000000000000
--- a/databases/riak2/files/patch-deps_erlang__js_c__src_patches_js-src-config-FreeBSD.mk.patch
+++ /dev/null
@@ -1,27 +0,0 @@
---- deps/erlang_js/c_src/patches/js-src-config-FreeBSD.mk.patch.orig    2015-02-26 16:11:58 UTC
-+++ deps/erlang_js/c_src/patches/js-src-config-FreeBSD.mk.patch
-@@ -1,6 +1,6 @@
- --- c_src.orig/js/src/config/FreeBSD.mk        1969-12-31 19:00:00.000000000 -0500
- +++ c_src/js/src/config/FreeBSD.mk     2011-03-30 20:12:51.000000000 -0400
--@@ -0,0 +1,99 @@
-+@@ -0,0 +1,100 @@
- +# -*- Mode: makefile -*-
- +#
- +# ***** BEGIN LICENSE BLOCK *****
-@@ -46,6 +46,7 @@
- +
- +CC ?= gcc
- +CCC ?= g++
-++LD = $(CC)
- +CFLAGS +=  -Wall -Wno-format
- +OS_CFLAGS = -DXP_UNIX -DSVR4 -DSYSV -D_BSD_SOURCE -DPOSIX_SOURCE -DHAVE_LOCALTIME_R
- +
-@@ -63,7 +64,7 @@
- +OS_CFLAGS+= -DX86_LINUX
- +
- +ifeq (gcc, $(CC))
--+# if using gcc on x86, check version for opt bug 
-++# if using gcc on x86, check version for opt bug
- +# (http://bugzilla.mozilla.org/show_bug.cgi?id=24892)
- +GCC_VERSION := $(shell gcc -v 2>&1 | grep version | awk '{ print $$3 }')
- +GCC_LIST:=$(sort 2.91.66 $(GCC_VERSION) )
diff --git a/databases/riak2/files/patch-deps_yokozuna_tools_grab-solr.sh b/databases/riak2/files/patch-deps_yokozuna_tools_grab-solr.sh
deleted file mode 100644
index 5d8a33107c19..000000000000
--- a/databases/riak2/files/patch-deps_yokozuna_tools_grab-solr.sh
+++ /dev/null
@@ -1,109 +0,0 @@
---- deps/yokozuna/tools/grab-solr.sh.orig	2015-04-15 02:24:04.000000000 +1000
-+++ deps/yokozuna/tools/grab-solr.sh	2015-09-24 10:46:04.504531298 +1000
-@@ -14,10 +14,10 @@
-     cd tools
- fi
- 
--PRIV_DIR=../priv
-+PRIV_DIR=%%YOKOZUNA%%/priv
- CONF_DIR=$PRIV_DIR/conf
- SOLR_DIR=$PRIV_DIR/solr
--BUILD_DIR=../build
-+BUILD_DIR=%%BUILD_DIR%%
- VSN=solr-4.7.0-yz-1
- FILENAME=$VSN.tgz
- TMP_DIR=/var/tmp/yokozuna
-@@ -32,58 +32,11 @@
-     test -e $SOLR_DIR/start.jar
- }
- 
--download()
--{
--    if which wget > /dev/null; then
--        wget --no-check-certificate --progress=dot:mega $1
--    elif which curl > /dev/null; then
--        curl --insecure --progress-bar -O $1
--    elif which fetch > /dev/null; then
--        fetch --no-verify-peer $1
--    fi
--}
--
--get_solr()
--{
--        if [ -z ${SOLR_PKG_DIR+x} ]
--        then
--            if [ -e $TMP_FILE ]; then
--                echo "Using cached copy of Solr $TMP_FILE"
--                ln -s $TMP_FILE $FILENAME
--            else
--                echo "Pulling Solr from S3"
--                download "http://s3.amazonaws.com/files.basho.com/solr/$FILENAME"
--                if [ -d $TMP_DIR ]; then
--                    cp $FILENAME $TMP_DIR
--                else
--                    mkdir $TMP_DIR
--                    cp $FILENAME $TMP_DIR
--                fi
--            fi
--        else
--            # This is now obsolete thanks to implicit caching above
--            # but will leave in for now as to not break anyone.
--            echo "Using local copy of Solr $SOLR_PKG_DIR/$FILENAME"
--            cp $SOLR_PKG_DIR/$FILENAME ./
--        fi
--        tar zxf $FILENAME
--}
--
- if ! check_for_solr
- then
- 
--    echo "Create dir $BUILD_DIR"
--    if [ ! -e $BUILD_DIR ]; then
--        mkdir $BUILD_DIR
--    fi
--
-     cd $BUILD_DIR
- 
--    if [ ! -e $SRC_DIR ]
--    then
--        get_solr
--    fi
--
-     echo "Creating Solr dir $SOLR_DIR"
- 
-     # Explicitly copy files needed rather than copying everything and
-@@ -108,7 +61,7 @@
-     echo "Solr dir created successfully"
- fi
- 
--JAVA_LIB=../priv/java_lib
-+JAVA_LIB=%%YOKOZUNA%%/priv/java_lib
--YZ_JAR_VSN=2
-+YZ_JAR_VSN=1
- YZ_JAR_NAME=yokozuna-$YZ_JAR_VSN.jar
- 
-@@ -118,19 +71,17 @@
-     then
-         mkdir $JAVA_LIB
-     fi
--
--    echo "Downloading $YZ_JAR_NAME"
--    download "http://s3.amazonaws.com/files.basho.com/yokozuna/$YZ_JAR_NAME"
--    mv $YZ_JAR_NAME $JAVA_LIB/$YZ_JAR_NAME
-+    echo "Copying $YZ_JAR_NAME"
-+    cp %%DISTDIR%%/$YZ_JAR_NAME $JAVA_LIB/$YZ_JAR_NAME
- fi
- 
--EXT_LIB=../priv/solr/lib/ext
-+EXT_LIB=%%YOKOZUNA%%/priv/solr/lib/ext
- MON_JAR_VSN=1
- MON_JAR_NAME=yz_monitor-$MON_JAR_VSN.jar
- 
- if [ ! -e $EXT_LIB/$MON_JAR_NAME ]
- then
-     echo "Downloading $MON_JAR_NAME"
--    download "http://s3.amazonaws.com/files.basho.com/yokozuna/$MON_JAR_NAME"
--    mv $MON_JAR_NAME $EXT_LIB/$MON_JAR_NAME
-+    echo "Copying $MON_JAR_NAME"
-+    cp %%DISTDIR%%/$MON_JAR_NAME $EXT_LIB/$MON_JAR_NAME
- fi
diff --git a/databases/riak2/files/patch-rel_vars.config b/databases/riak2/files/patch-rel_vars.config
deleted file mode 100644
index 6c93d9baffa3..000000000000
--- a/databases/riak2/files/patch-rel_vars.config
+++ /dev/null
@@ -1,42 +0,0 @@
---- rel/vars.config.orig        2015-02-27 13:37:42 UTC
-+++ rel/vars.config
-@@ -2,11 +2,12 @@
- %% ex: ft=erlang ts=4 sw=4 et
- 
- %% Platform-specific installation paths
--{platform_bin_dir,  "./bin"}.
--{platform_data_dir, "./data"}.
--{platform_etc_dir,  "./etc"}.
--{platform_lib_dir,  "./lib"}.
--{platform_log_dir,  "./log"}.
-+{platform_base_dir, "%%PREFIX%%/lib/riak"}.
-+{platform_bin_dir,  "%%PREFIX%%/sbin"}.
-+{platform_etc_dir,  "%%PREFIX%%/etc/riak"}.
-+{platform_lib_dir,  "%%PREFIX%%/lib/riak/lib"}.
-+{platform_data_dir, "/var/db/riak"}.
-+{platform_log_dir,  "/var/log/riak"}.
- 
- %%
- %% etc/app.config
-@@ -40,14 +41,14 @@
- %%
- %% bin/riak
- %%
--{runner_script_dir,  "\`cd \\`dirname $0\\` && /bin/pwd\`"}.
--{runner_base_dir,    "{{runner_script_dir}}/.."}.
--{runner_etc_dir,     "$RUNNER_BASE_DIR/etc"}.
--{runner_log_dir,     "$RUNNER_BASE_DIR/log"}.
--{runner_lib_dir,     "$RUNNER_BASE_DIR/lib"}.
--{runner_patch_dir,   "$RUNNER_BASE_DIR/lib/basho-patches"}.
--{pipe_dir,           "/tmp/$RUNNER_BASE_DIR/"}.
--{runner_user,        ""}.
-+{runner_script_dir,  "{{platform_bin_dir}}"}.
-+{runner_base_dir,    "{{platform_base_dir}}"}.
-+{runner_etc_dir,     "{{platform_etc_dir}}"}.
-+{runner_log_dir,     "{{platform_log_dir}}"}.
-+{runner_lib_dir,     "{{platform_lib_dir}}"}.
-+{runner_patch_dir,   "{{platform_lib_dir}}/basho-patches"}.
-+{pipe_dir,           "/tmp/riak"}.
-+{runner_user,        "riak"}.
- {runner_wait_process, "riak_core_node_watcher"}.
- {runner_ulimit_warn, 65536}.
diff --git a/databases/riak2/files/riak.in b/databases/riak2/files/riak.in
deleted file mode 100644
index 10e74492b0df..000000000000
--- a/databases/riak2/files/riak.in
+++ /dev/null
@@ -1,27 +0,0 @@
-#!/bin/sh                                                                                                               
-
-# $FreeBSD$
-#
-# PROVIDE: riak
-# REQUIRE: LOGIN
-# KEYWORD: shutdown
-#
-# Add these lines to /etc/rc.conf.local or /etc/rc.conf
-# to enable this service:
-#
-# riak_enable (bool):   Set to NO by default.
-#                       Set it to YES to enable riak
-
-. /etc/rc.subr
-
-name=riak
-rcvar=riak_enable
-
-load_rc_config $name
-
-command=%%PREFIX%%/lib/riak/erts-5.10.4/bin/beam.smp
-pidfile="/var/run/${name}/${name}.pid"
-start_cmd="%%PREFIX%%/sbin/${name} start"
-stop_cmd="%%PREFIX%%/sbin/${name} stop"
-
-run_rc_command "$1"
diff --git a/databases/riak2/pkg-descr b/databases/riak2/pkg-descr
deleted file mode 100644
index 8cb10379da8e..000000000000
--- a/databases/riak2/pkg-descr
+++ /dev/null
@@ -1,19 +0,0 @@
-Riak is an open source, distributed database. Riak is architected for:
-
-* Low-Latency
-Riak is designed to store data and serve requests predictably and quickly, even
-during peak times.
-
-* Availability
-Riak replicates and retrieves data intelligently, making it available for read
-and write operations even in failure conditions.
-
-* Fault-Tolerance
-Riak is fault-tolerant so you can lose access to nodes due to network partition
-or hardware failure and never lose data.
-
-* Operational Simplicity
-Riak allows you to add machines to the cluster easily, without a large
-operational burden.
-
-WWW: http://basho.com/riak
diff --git a/databases/riak2/pkg-plist b/databases/riak2/pkg-plist
deleted file mode 100644
index ea859b367138..000000000000
--- a/databases/riak2/pkg-plist
+++ /dev/null
@@ -1,16 +0,0 @@
-sbin/riak
-sbin/riak-admin
-sbin/riak-debug
-sbin/search-cmd
-man/man1/riak-admin.1.gz
-man/man1/riak-debug.1.gz
-man/man1/riak.1.gz
-man/man1/search-cmd.1.gz
-@sample %%RIAK_CONFDIR%%/riak.conf.sample
-@sample %%RIAK_CONFDIR%%/solr-log4j.properties.sample
-@owner %%USERS%%
-@group %%GROUPS%%
-@dir %%RIAK_DBDIR%%
-@dir %%RIAK_HOMEDIR%%
-@dir %%RIAK_LIBDIR%%
-@dir %%RIAK_LOGDIR%%
diff --git a/databases/ruby-mysql/Makefile b/databases/ruby-mysql/Makefile
deleted file mode 100644
index 818d5f31efd6..000000000000
--- a/databases/ruby-mysql/Makefile
+++ /dev/null
@@ -1,48 +0,0 @@
-# Created by: Akinori MUSHA aka knu <knu@idaemons.org>
-# $FreeBSD$
-
-PORTNAME=	mysql
-PORTVERSION=	2.8.2
-PORTREVISION=	1
-CATEGORIES=	databases ruby
-MASTER_SITES=	http://www.tmtm.org/downloads/mysql/ruby/
-PKGNAMEPREFIX=	${RUBY_PKGNAMEPREFIX}
-DISTNAME=	${PORTNAME}-ruby-${PORTVERSION}
-DIST_SUBDIR=	ruby
-
-MAINTAINER=	knu@FreeBSD.org
-COMMENT=	Ruby module for accessing MySQL databases with a C API like interface
-
-LICENSE=	BSD2CLAUSE RUBY
-LICENSE_COMB=	dual
-
-BROKEN=		Invalid checksum
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-BROKEN_RUBY23=	yes
-
-OPTIONS_DEFINE=	DOCS
-
-USE_MYSQL=	yes
-USE_RUBY=	yes
-USE_RUBY_EXTCONF=	yes
-
-CONFIGURE_ARGS=	--with-mysql-config
-INSTALL_TARGET=	site-install
-MAKE_ARGS=	INSTALL_PROG="${INSTALL_PROGRAM}" \
-		INSTALL_DATA="${INSTALL_DATA}"
-
-PLIST_FILES=	%%RUBY_SITEARCHLIBDIR%%/mysql.so
-
-DOCSDIR=	${RUBY_MODDOCDIR}
-PORTDOCS=	*
-
-post-install:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}/ja
-	${INSTALL_DATA} ${WRKSRC}/README.html ${STAGEDIR}${DOCSDIR}/
-	${INSTALL_DATA} ${WRKSRC}/tommy.css ${STAGEDIR}${DOCSDIR}/
-	${INSTALL_DATA} ${WRKSRC}/README_ja.html ${STAGEDIR}${DOCSDIR}/ja/
-	${LN} -fs ../tommy.css ${STAGEDIR}${DOCSDIR}/ja/
-
-.include <bsd.port.mk>
diff --git a/databases/ruby-mysql/distinfo b/databases/ruby-mysql/distinfo
deleted file mode 100644
index 601d46d91de4..000000000000
--- a/databases/ruby-mysql/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (ruby/mysql-ruby-2.8.2.tar.gz) = 5474a619d7631e67088d481193f69199e28284a5d23f75a8f00de776d91f8a5c
-SIZE (ruby/mysql-ruby-2.8.2.tar.gz) = 32710
diff --git a/databases/ruby-mysql/pkg-descr b/databases/ruby-mysql/pkg-descr
deleted file mode 100644
index f9205bc2f815..000000000000
--- a/databases/ruby-mysql/pkg-descr
+++ /dev/null
@@ -1,4 +0,0 @@
-This is a Ruby module for accessing MySQL databases, which has the
-same functions as C API.
-
-WWW: http://www.tmtm.org/en/mysql/ruby/
diff --git a/devel/Makefile b/devel/Makefile
index cfb56272773e..7fdc60cbf5a7 100644
--- a/devel/Makefile
+++ b/devel/Makefile
@@ -6108,7 +6108,6 @@
     SUBDIR += subcommander2
     SUBDIR += subversion
     SUBDIR += subversion-book
-    SUBDIR += subversion-static
     SUBDIR += subversion19
     SUBDIR += subversive
     SUBDIR += svk
diff --git a/devel/subversion-static/Makefile b/devel/subversion-static/Makefile
deleted file mode 100644
index d6763831b948..000000000000
--- a/devel/subversion-static/Makefile
+++ /dev/null
@@ -1,23 +0,0 @@
-# $FreeBSD$
-
-PKGNAMESUFFIX=	-static
-
-CONFLICTS_INSTALL=	${PORTNAME}-[0-9]*
-
-OPTIONS_EXCLUDE=	${OPTIONS_DEFINE}
-OPTIONS_SLAVE=		FREEBSD_TEMPLATE P4_STYLE_MARKERS SERF STATIC
-
-BROKEN=		fails to link: (.text+0xf936a): undefined reference to `log'
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-MASTERDIR=	${.CURDIR}/../subversion
-PKGMESSAGE=	${.CURDIR}/pkg-message
-
-# Set these by hands, as options are undefined
-PLIST_SUB+=	TOOLS="@comment " \
-		SVNSERVE_WRAPPER="@comment " \
-		BDB="@comment " \
-		NLS="@comment "
-
-.include "${MASTERDIR}/Makefile"
diff --git a/devel/subversion-static/pkg-message b/devel/subversion-static/pkg-message
deleted file mode 100644
index 6077f4782164..000000000000
--- a/devel/subversion-static/pkg-message
+++ /dev/null
@@ -1,6 +0,0 @@
-Bear in mind that you will not be notified of any weaknesses or vulnerabilities
-discovered in ports used to build this, though they may affect the static
-Subversion binary.
-
-This package will be rebuilt as the build dependencies are updated, but it must
-be kept up to date if security is a concern.
diff --git a/japanese/Makefile b/japanese/Makefile
index f70a4bb3809f..ea026e217f62 100644
--- a/japanese/Makefile
+++ b/japanese/Makefile
@@ -293,7 +293,6 @@
     SUBDIR += wordpress
     SUBDIR += wwasw-fpw
     SUBDIR += xdtp
-    SUBDIR += xgate
     SUBDIR += xpdf
     SUBDIR += xshodou
     SUBDIR += xtr
diff --git a/japanese/xgate/Makefile b/japanese/xgate/Makefile
deleted file mode 100644
index f27921e5e3b3..000000000000
--- a/japanese/xgate/Makefile
+++ /dev/null
@@ -1,94 +0,0 @@
-# Created by: nork@FreeBSD.org
-# $FreeBSD$
-
-PORTNAME=	xgate
-PORTVERSION=	3.7pl6
-PORTREVISION=	2
-CATEGORIES=	japanese mail www java
-MASTER_SITES=	http://www.orangesoft.co.jp/index.php/download_file/-/192/
-DISTNAME=	${PORTNAME}pkg${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Webmail system xGate implemented by Servlet over IMAP4/POP3
-
-BROKEN=		unfetchable
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-RUN_DEPENDS=	${APP_HOME}/bin/bootstrap.jar:www/tomcat6
-
-USES=		dos2unix tar:tgz
-NO_BUILD=	yes
-USE_JAVA=	yes
-JAVA_VERSION=	1.6+
-SHAREOWN=	www
-SHAREGRP=	www
-
-PLIST_SUB=	T=${APP_HOME:S|^${LOCALBASE}/||} \
-		WWWUID=${WWWOWN} WWWGID=${WWWGRP}
-
-OPTIONS_DEFINE=	DOCS
-
-PORTDOCS=	AdminGuide.pdf \
-		BasicPkgInstallGuide.pdf \
-		ConfigSetupGuide.pdf \
-		LDAPSchema_V35_37.xls \
-		PCUserGuide.pdf \
-		ReleaseNote_V3.5.2.pdf \
-		ReleaseNote_V3.5.2PL1.pdf \
-		ReleaseNote_V3.5.2PL2.pdf \
-		ReleaseNote_V3.5.2PL3_3.7.pdf \
-		ReleaseNote_V3.5.2PL4_3.7PL1.pdf \
-		ReleaseNote_V3.5.2PL5_3.7PL2.pdf \
-		ReleaseNote_V3.5.2PL6_3.7PL3.pdf \
-		ReleaseNote_V3.5.2PL7_3.7PL4.pdf \
-		ReleaseNote_V3.5.2PL8_3.7PL5.pdf \
-		ReleaseNote_V3.5.2PL9_3.7PL6.pdf \
-		UserGuide.pdf
-
-RESTRICTED=	Commercial license
-
-.include <bsd.port.options.mk>
-
-APP_HOME!=	${MAKE} -C ${PORTSDIR}/www/tomcat6 -VAPP_HOME PREFIX=${LOCALBASE}
-
-CNFLSTS=	account/admin.ndt	\
-		account/license.dat	\
-		conf/access.dat		\
-		conf/address.data	\
-		conf/address.map	\
-		conf/admin.ldif		\
-		conf/admin_group.ldif	\
-		conf/createuser.conf	\
-		conf/device_match.conf	\
-		conf/entry.data		\
-		conf/extra.types	\
-		conf/group.data		\
-		conf/group.map		\
-		conf/ldap.map		\
-		conf/log.conf		\
-		conf/terminal.dat	\
-		conf/user.data		\
-		conf/xgate.conf
-
-post-extract:
-	@${MKDIR} ${WRKSRC}/xgate
-	@${TAR} -xvf ${WRKSRC}/xgate.war -C ${WRKSRC}/xgate
-
-post-patch:
-.for conf in ${CNFLSTS}
-	@cd ${WRKSRC}/xgate/WEB-INF && ${MV} ${conf} ${conf}.sample
-.endfor
-	${FIND} ${WRKSRC} -name \*.orig -delete
-
-do-install:
-	${MKDIR} ${STAGEDIR}/var/log/xgate
-	${MKDIR} ${STAGEDIR}${APP_HOME}/webapps/${PORTNAME}
-	@cd ${WRKSRC}/${PORTNAME} && \
-		${COPYTREE_SHARE} \* ${STAGEDIR}${APP_HOME}/webapps/${PORTNAME}
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-.for docf in ${PORTDOCS}
-	${INSTALL_DATA} ${WRKSRC}/docs/${docf} ${STAGEDIR}${DOCSDIR}
-.endfor
-
-.include <bsd.port.mk>
diff --git a/japanese/xgate/distinfo b/japanese/xgate/distinfo
deleted file mode 100644
index efe0ed7aa0f4..000000000000
--- a/japanese/xgate/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (xgatepkg3.7pl6.tgz) = 7f589b75ed502b1d93a9b69899e447082ba434ca810f7bc329120701705b14e9
-SIZE (xgatepkg3.7pl6.tgz) = 16026597
diff --git a/japanese/xgate/files/patch-log.conf b/japanese/xgate/files/patch-log.conf
deleted file mode 100644
index 9da03e57e7ee..000000000000
--- a/japanese/xgate/files/patch-log.conf
+++ /dev/null
@@ -1,18 +0,0 @@
---- xgate/WEB-INF/conf/log.conf.orig	Wed Nov 16 11:35:47 2005
-+++ xgate/WEB-INF/conf/log.conf	Wed Nov 16 11:38:07 2005
-@@ -2,7 +2,7 @@
- #Fri Oct 10 17:21:19 JST 2003
- log4j.appender.A.layout.ConversionPattern=%d{MM/dd HH\:mm\:ss} [%-5p] %m%n
- log4j.appender.E.DatePattern='.'yyyy-MM-dd
--log4j.appender.E.File=/usr/local/xgate/log/logfile.html
-+log4j.appender.E.File=/var/log/xgate/logfile.html
- log4j.appender.D.layout.ConversionPattern=%d{yyyy-MM-dd HH\:mm\:ss} [%-5p]/ %m%n
- log4j.appender.A.DatePattern='.'MM/dd
- log4j.appender.A.layout=org.apache.log4j.PatternLayout
-@@ -12,5 +12,5 @@
- log4j.appender.E.layout=org.apache.log4j.HTMLLayout
- log4j.appender.A=org.apache.log4j.ConsoleAppender
- log4j.appender.D.layout=org.apache.log4j.PatternLayout
--log4j.appender.D.File=/usr/local/xgate/log/logfile.txt
-+log4j.appender.D.File=/var/log/xgate/logfile.txt
- log4j.rootCategory=DEBUG,D,A
diff --git a/japanese/xgate/files/patch-web.xml b/japanese/xgate/files/patch-web.xml
deleted file mode 100644
index 14afe48e16a1..000000000000
--- a/japanese/xgate/files/patch-web.xml
+++ /dev/null
@@ -1,13 +0,0 @@
---- xgate/WEB-INF/web.xml.orig	Sat Dec 17 23:52:08 2005
-+++ xgate/WEB-INF/web.xml	Sun Dec 18 15:17:15 2005
-@@ -90,6 +90,10 @@
-         <session-timeout>10</session-timeout>
-     </session-config>
-     <mime-mapping>
-+        <extension>html</extension>
-+        <mime-type>text/html;charset=Shift_JIS</mime-type>
-+    </mime-mapping>
-+    <mime-mapping>
-         <extension>hdml</extension>
-         <mime-type>text/x-hdml;charset=Shift_JIS</mime-type>
-     </mime-mapping>
diff --git a/japanese/xgate/pkg-descr b/japanese/xgate/pkg-descr
deleted file mode 100644
index e672c1a680f5..000000000000
--- a/japanese/xgate/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-xGate is a webmail system.
-o Implement as Java Servlet.
-o Support IMAP4rev1 and POP3 back-end mail engine.
-o Provide mails to PC, mobile-phones and PDA with
-  high security method.
-o Supported by Orangesoft Inc with low cost management.
-
-= = = = = = = = = = = = = = = = = = = = = = = = = = = = =
-If you can use apache 2.2 and mod_proxy_ajp, add following
-lines to httpd.conf:
-
-LoadModule proxy_module libexec/apache22/mod_proxy.so
-LoadModule proxy_ajp_module libexec/apache22/mod_proxy_ajp.so
-ProxyPass /xgate/ ajp://localhost:8009/xgate/
-= = = = = = = = = = = = = = = = = = = = = = = = = = = = =
-
-WWW: http://www.orangesoft.co.jp/xGate/
diff --git a/japanese/xgate/pkg-plist b/japanese/xgate/pkg-plist
deleted file mode 100644
index 706924192418..000000000000
--- a/japanese/xgate/pkg-plist
+++ /dev/null
@@ -1,2059 +0,0 @@
-@owner %%WWWUID%%
-@group %%WWWGID%%
-%%T%%/webapps/xgate/META-INF/MANIFEST.MF
-%%T%%/webapps/xgate/WEB-INF/LICENSE.jakarta-struts
-@sample %%T%%/webapps/xgate/WEB-INF/account/admin.ndt.sample
-@sample %%T%%/webapps/xgate/WEB-INF/account/license.dat.sample
-%%T%%/webapps/xgate/WEB-INF/address/readme.txt
-%%T%%/webapps/xgate/WEB-INF/classes/com/happysize/net/radius/Radiusproto.class
-%%T%%/webapps/xgate/WEB-INF/classes/com/happysize/net/radius/Simple_radius_client.class
-%%T%%/webapps/xgate/WEB-INF/classes/com/happysize/net/radius/test.class
-%%T%%/webapps/xgate/WEB-INF/classes/com/happysize/util/Bytebuffer.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/AccountAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/AccountBean.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/AccountManager.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/AccountManagerException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/GroupConfig.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/GroupEntry.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/NotifyConfig.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/NotifyMail.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/nissho/PopAuthBean.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/CreateUserException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/PCUserLoginBean.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/TBSAccessFilter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/TBSUser.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/action/ConfirmAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/app/tbs/action/EntryAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/CapsuledContent.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/DefaultDrawListModelVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/DefaultDrawTextAreaVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/Envelope$1$ZoneTBL.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/Envelope.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/HtmlHelper.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/HtmlTextConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MailAddress.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MediaVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageBody.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageBodyFactory.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageCanvas.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageDrawHint.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageFactory.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageFactoryException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageHeader.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageItem.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageItemFactory.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageTextVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MessageVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MimeContent.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MimeHeader.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MultiPartContent.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/MultiPartContentFactory.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/QuotedPair.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/Rfc822Parser.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/SimpleContent.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/SimpleContentImpl.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mail/SinglePartContentFactory.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/Base64.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/Charset.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/ContentDisposition.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/ContentTransferEncoding.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/ContentType$Param.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/ContentType.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/HeaderTextDecoder.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/HeaderTextEncoder.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/QuotedPrintable.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/mime/Utf7.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/net/ACLBadFormatException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/net/AccessControl.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/net/AccessControlList.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/net/Apop.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/net/HttpConnection.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/SelectedCopyAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/SendMessageAddressAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/SendMessageEntryCreateAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/SendMessagePaddressAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/ShowAddressbookViewAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/ShowMailMenuAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/ShowMsgMenuAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/cmd/helper/PrivateAddressbookAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/DispatcherAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/Fig.1.0.uad
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/Fig1.3.uad
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/LicenseInfoBean.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/MessageboxFormAction.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/action/NoticeFormAction.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/resource/GroupXgateValues.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/resource/NoticeXgateValues.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/resource/XgateValues.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/test/LoginTest.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/test/NameResolverTest.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/util/CheckLogin.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/util/LdapSearchAttr.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/configsetup/util/PerformInitialize.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/core/AccountNotFoundException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/core/SessionManager.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/core/SetCharacterEncodingFilter.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/core/XGateContextNotFoundException.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/gateadmin/GateAccountServer$BeanComparator.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/gateadmin/GateAccountServer$FormUtil.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/gateadmin/GateAccountServer.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/gateadmin/GateAccountServer_old.java.old
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/imode/WillcomTextConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/imode/WillcomWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/mml/JskyWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/mml/MmlAnchorFormat.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/mml/MmlMediaChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/mml/MmlMediaConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/mml/MmlTextConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/MailChecker$ImapChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/MailChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/MailNotice$TimerThread.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/MailNotice.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/MailNoticeServlet.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/notice/ShortMail.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/page/ComposeMessageFormPage.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/page/PCComposeMessageFormPage.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/page/helper/MessageListPageNavigator.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/CarrierCheckBean.class
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-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Application_vnd_ms_powerpoint.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Application_x_msexcel.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Application_x_mspowerpoint.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Image_bmp.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Image_gif.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Image_jpeg.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Image_png.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Javacat.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Media.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/MediaChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/MediaDecoder.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/Text_plain.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/util/media/WebMediaDecoder.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/validator/XGateEmailValidator.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/validator/XGateFieldChecks.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/validator/XGateGenericValidator.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlAnchorFormat.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlErrorConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlHelper.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlMediaChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlMediaConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlTextConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/HdmlWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WapWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlAnchorFormat.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlErrorConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlHelper.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlMediaConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlTextConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/wap/WmlWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/MailboxTree.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/MailboxTreeItem$MailboxComparator.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/MailboxTreeItem.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/MessageBodyVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/PdaMessageDisplayVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/PdaWriter.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/TreeItem.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebAnchorFormat.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebInputChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebMediaChecker.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebMediaConvertVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebMessageDisplayVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebReportMessageDisplayVisitor.class
-%%T%%/webapps/xgate/WEB-INF/classes/jp/co/orangesoft/xgate/web/WebWriter.class
-@sample %%T%%/webapps/xgate/WEB-INF/conf/access.dat.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/address.data.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/address.map.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/admin.ldif.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/admin_group.ldif.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/createuser.conf.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/device_match.conf.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/entry.data.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/extra.types.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/group.data.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/group.map.sample
-%%T%%/webapps/xgate/WEB-INF/conf/javacat.properties
-@sample %%T%%/webapps/xgate/WEB-INF/conf/ldap.map.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/log.conf.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/terminal.dat.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/user.data.sample
-@sample %%T%%/webapps/xgate/WEB-INF/conf/xgate.conf.sample
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/78-EUC-H
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-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/78ms-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/78ms-RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/83pv-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90ms-RKSJ-H
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-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90msp-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90msp-RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90pv-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90pv-RKSJ-UCS2
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90pv-RKSJ-UCS2C
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/90pv-RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Add-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Add-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Add-RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Add-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-CNS1-UCS2
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-GB1-UCS2
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-0
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-1
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-2
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-3
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-4
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Adobe-Japan1-UCS2
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/EUC-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/EUC-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Ext-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Ext-RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Ext-RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Ext-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Hankaku
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Hiragana
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Katakana
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/NWP-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/NWP-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/RKSJ-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/RKSJ-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/Roman
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UCS2-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UCS2-HW-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UCS2-HW-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UCS2-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UTF16-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UTF16-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UTF8-H
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJIS-UTF8-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJISPro-UCS2-HW-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJISPro-UCS2-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/UniJISPro-UTF8-V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/V
-%%T%%/webapps/xgate/WEB-INF/dhklib/CMap/WP-Symbol
-%%T%%/webapps/xgate/WEB-INF/dhklib/javacat.lic
-%%T%%/webapps/xgate/WEB-INF/dtds/struts-config_1_0.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/struts-config_1_1.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/struts-config_1_2.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/tiles-config_1_1.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/validator_1_0.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/validator_1_1_3.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/web-app_2_2.dtd
-%%T%%/webapps/xgate/WEB-INF/dtds/web-app_2_3.dtd
-%%T%%/webapps/xgate/WEB-INF/lib/aspectjrt-1.0.5.jar
-%%T%%/webapps/xgate/WEB-INF/lib/cactus-ant-1.4b1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-beanutils.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-collections.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-dbcp.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-digester.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-fileupload.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-httpclient-2.0alpha1-20020720.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-lang.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-logging-1.0.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-logging.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-pool.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-resources.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-services.jar
-%%T%%/webapps/xgate/WEB-INF/lib/commons-validator-1.3.1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/cos.jar
-%%T%%/webapps/xgate/WEB-INF/lib/dom.jar
-%%T%%/webapps/xgate/WEB-INF/lib/httpunit-1.4.1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/httpunit.jar
-%%T%%/webapps/xgate/WEB-INF/lib/iaik_jce.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jaas.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jakarta-oro-2.0.3.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jakarta-oro.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jakarta-regexp-1.2.jar
-%%T%%/webapps/xgate/WEB-INF/lib/javacat.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jaxen-full.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jaxp-api.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jdbc2_0-stdext.jar
-%%T%%/webapps/xgate/WEB-INF/lib/jstl.jar
-%%T%%/webapps/xgate/WEB-INF/lib/junit-3.7.jar
-%%T%%/webapps/xgate/WEB-INF/lib/junit.jar
-%%T%%/webapps/xgate/WEB-INF/lib/log4j-1.2.7.jar
-%%T%%/webapps/xgate/WEB-INF/lib/sax.jar
-%%T%%/webapps/xgate/WEB-INF/lib/saxpath.jar
-%%T%%/webapps/xgate/WEB-INF/lib/standard.jar
-%%T%%/webapps/xgate/WEB-INF/lib/struts-legacy.jar
-%%T%%/webapps/xgate/WEB-INF/lib/struts.jar
-%%T%%/webapps/xgate/WEB-INF/lib/struts1.1-i18n_ja.jar
-%%T%%/webapps/xgate/WEB-INF/lib/tools.jar
-%%T%%/webapps/xgate/WEB-INF/lib/velocity-dep-1.4.jar
-%%T%%/webapps/xgate/WEB-INF/lib/velocity-tools-1.1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/velocity-tools-generic-1.1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/velocity-tools-view-1.1.jar
-%%T%%/webapps/xgate/WEB-INF/lib/xalan.jar
-%%T%%/webapps/xgate/WEB-INF/lib/xercesImpl.jar
-%%T%%/webapps/xgate/WEB-INF/lib/xmlParserAPIs.jar
-%%T%%/webapps/xgate/WEB-INF/log/readme.txt
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/account_list.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/account_list.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/admin_main_menu.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/admin_modify_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/admin_modify_account2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/create_group.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/edit_group.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/account_list.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/account_list.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/admin_main_menu.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/admin_modify_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/admin_modify_account2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/create_group.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/edit_group.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/group_list.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/import.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/import_users_result.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/left_panel.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/left_panel_admin.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/license.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/log_view.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/login.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/login.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/login_user.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/message.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/message2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/modifyaccount.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/modifyaccount2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/new_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/new_account2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/en/search_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/group_list.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/import.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/import_users_result.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/left_panel.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/left_panel_admin.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/license.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/log_view.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/login.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/login.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/login_user.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/message.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/message2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/modifyaccount.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/modifyaccount2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/new_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/new_account2.vm
-%%T%%/webapps/xgate/WEB-INF/pages/gateadmin/search_account.vm
-%%T%%/webapps/xgate/WEB-INF/pages/layout/default.vm
-%%T%%/webapps/xgate/WEB-INF/pages/layout/gateadmin_admin_layout.vm
-%%T%%/webapps/xgate/WEB-INF/pages/layout/gateadmin_layout.vm
-%%T%%/webapps/xgate/WEB-INF/pages/layout/help_pc.vm
-%%T%%/webapps/xgate/WEB-INF/pages/macro/macro.vm
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/address_entry.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/address_item_view.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/caution_en.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/caution_jp.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/confirm_msg_delete.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/confirm_msg_delete_all.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/confirm_msg_delete_select.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/entry.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/entry_hdml.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/mail_address_edit.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/mail_text.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/potal.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/radius_entry.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/radius_entry_hdml.jsp
-%%T%%/webapps/xgate/WEB-INF/pages/mobile/template.jsp
-%%T%%/webapps/xgate/WEB-INF/res/message_en.res
-%%T%%/webapps/xgate/WEB-INF/res/message_ja.res
-%%T%%/webapps/xgate/WEB-INF/sample_data/import_user.csv
-%%T%%/webapps/xgate/WEB-INF/sample_data/rootdn.ldif
-%%T%%/webapps/xgate/WEB-INF/sample_data/rootdn_group.ldif
-%%T%%/webapps/xgate/WEB-INF/struts-config-configsetup-actionmappings.xml
-%%T%%/webapps/xgate/WEB-INF/struts-config-configsetup-forms.xml
-%%T%%/webapps/xgate/WEB-INF/struts-config.xml
-%%T%%/webapps/xgate/WEB-INF/template/etc/admin.txt
-%%T%%/webapps/xgate/WEB-INF/template/etc/hdml.txt
-%%T%%/webapps/xgate/WEB-INF/template/etc/mail.txt
-%%T%%/webapps/xgate/WEB-INF/template/etc/noticemail.txt
-%%T%%/webapps/xgate/WEB-INF/template/etc/noticemail_e.txt
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/address.htm
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/address_item.htm
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/address_page.htm
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/addresslist.htm
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/addresslist_item.htm
-%%T%%/webapps/xgate/WEB-INF/template/jsky/en/addresslist_page.htm
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-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/menu_foldermsg.hdml
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-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/menu_message.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/menu_msglist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/menu_trashlist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/menu_trashmsg.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/message.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msg_deleteall.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msg_list.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msg_next.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msg_part.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msglist_item.hdml
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-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/msglist_page.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/noop.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult_data.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult_item.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult_noop.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult_page.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/phoneresult_tel.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_folderlist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_foldermsg.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_inboxlist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_inboxmsg.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_message.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_msglist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_trashlist.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_menu_trashmsg.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_message.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/pop_msg_list.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/potal.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/sendmail.hdml
-%%T%%/webapps/xgate/WEB-INF/template/wap/ja/trash_delete.hdml
-%%T%%/webapps/xgate/WEB-INF/tlds/c-rt.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/c.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/fmt-rt.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/fmt.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/orange.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/sql-rt.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/sql.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-bean.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-html.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-logic.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-nested.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-template.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/struts-tiles.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/x-rt.tld
-%%T%%/webapps/xgate/WEB-INF/tlds/x.tld
-%%T%%/webapps/xgate/WEB-INF/validation.xml
-%%T%%/webapps/xgate/WEB-INF/validator-rules.xml
-%%T%%/webapps/xgate/WEB-INF/velocity-toolbox.xml
-%%T%%/webapps/xgate/WEB-INF/velocity.properties
-%%T%%/webapps/xgate/WEB-INF/web.xml
-%%T%%/webapps/xgate/css/admin.css
-%%T%%/webapps/xgate/css/configsetup.css
-%%T%%/webapps/xgate/css/default.css
-%%T%%/webapps/xgate/css/help.css
-%%T%%/webapps/xgate/css/pc_compose.css
-%%T%%/webapps/xgate/css/pc_login.css
-%%T%%/webapps/xgate/form/configsetup/AuthForm.jsp
-%%T%%/webapps/xgate/form/configsetup/accountForm.jsp
-%%T%%/webapps/xgate/form/configsetup/aclForm.jsp
-%%T%%/webapps/xgate/form/configsetup/addressbookForm.jsp
-%%T%%/webapps/xgate/form/configsetup/askSetDefault.jsp
-%%T%%/webapps/xgate/form/configsetup/changePasswordForm.jsp
-%%T%%/webapps/xgate/form/configsetup/commonForm.jsp
-%%T%%/webapps/xgate/form/configsetup/customForm.jsp
-%%T%%/webapps/xgate/form/configsetup/footer.jsp
-%%T%%/webapps/xgate/form/configsetup/groupForm.jsp
-%%T%%/webapps/xgate/form/configsetup/javacatForm.jsp
-%%T%%/webapps/xgate/form/configsetup/ldapForm.jsp
-%%T%%/webapps/xgate/form/configsetup/license.jsp
-%%T%%/webapps/xgate/form/configsetup/licenseInfoForm.jsp
-%%T%%/webapps/xgate/form/configsetup/login.jsp
-%%T%%/webapps/xgate/form/configsetup/mainForm.jsp
-%%T%%/webapps/xgate/form/configsetup/messagebox.jsp
-%%T%%/webapps/xgate/form/configsetup/noticeForm.jsp
-%%T%%/webapps/xgate/form/configsetup/otpForm.jsp
-%%T%%/webapps/xgate/form/configsetup/spamFilterForm.jsp
-%%T%%/webapps/xgate/form/configsetup/terminalForm.jsp
-%%T%%/webapps/xgate/form/configsetup/topmenu.jsp
-%%T%%/webapps/xgate/help/ja/config_acl.html
-%%T%%/webapps/xgate/help/ja/config_address.html
-%%T%%/webapps/xgate/help/ja/config_admin.html
-%%T%%/webapps/xgate/help/ja/config_auth.html
-%%T%%/webapps/xgate/help/ja/config_common.html
-%%T%%/webapps/xgate/help/ja/config_custom.html
-%%T%%/webapps/xgate/help/ja/config_group.html
-%%T%%/webapps/xgate/help/ja/config_import_users.html
-%%T%%/webapps/xgate/help/ja/config_javacat.html
-%%T%%/webapps/xgate/help/ja/config_ldap.html
-%%T%%/webapps/xgate/help/ja/config_license.html
-%%T%%/webapps/xgate/help/ja/config_loginfo.html
-%%T%%/webapps/xgate/help/ja/config_notice.html
-%%T%%/webapps/xgate/help/ja/config_otp.html
-%%T%%/webapps/xgate/help/ja/config_password.html
-%%T%%/webapps/xgate/help/ja/config_setup.html
-%%T%%/webapps/xgate/help/ja/config_terminal.html
-%%T%%/webapps/xgate/help/ja/default.css
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_account.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_keycode.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_main_menu.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_option.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_terminal.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/admin_url_cellular.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/default.css
-%%T%%/webapps/xgate/help/ja/gateadmin/groupdata.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/import.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/license.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/log_view.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/login.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/login_user.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/spam_filter.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/url.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/url_cellular.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_account.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_alias.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_filter.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_keycode.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_level.vm
-%%T%%/webapps/xgate/help/ja/gateadmin/user_option.vm
-%%T%%/webapps/xgate/help/ja/licenseentry.html
-%%T%%/webapps/xgate/help/ja/licenseinfo.html
-%%T%%/webapps/xgate/help/ja/login.html
-%%T%%/webapps/xgate/help/ja/logview.html
-%%T%%/webapps/xgate/help/ja/monitor.html
-%%T%%/webapps/xgate/help/ja/url.html
-%%T%%/webapps/xgate/help/ja/urlcellular.html
-%%T%%/webapps/xgate/img/en/arrow_ylw.gif
-%%T%%/webapps/xgate/img/en/ball.gif
-%%T%%/webapps/xgate/img/en/bar.gif
-%%T%%/webapps/xgate/img/en/bg.gif
-%%T%%/webapps/xgate/img/en/block.gif
-%%T%%/webapps/xgate/img/en/english.gif
-%%T%%/webapps/xgate/img/en/help.gif
-%%T%%/webapps/xgate/img/en/import.gif
-%%T%%/webapps/xgate/img/en/japanese.gif
-%%T%%/webapps/xgate/img/en/l_bar.gif
-%%T%%/webapps/xgate/img/en/logo.gif
-%%T%%/webapps/xgate/img/en/orange.gif
-%%T%%/webapps/xgate/img/en/t_bar.gif
-%%T%%/webapps/xgate/img/en/u_bar.gif
-%%T%%/webapps/xgate/img/ja/LOGO_login.gif
-%%T%%/webapps/xgate/img/ja/arrow_ylw.gif
-%%T%%/webapps/xgate/img/ja/ball.gif
-%%T%%/webapps/xgate/img/ja/bar.gif
-%%T%%/webapps/xgate/img/ja/bg.gif
-%%T%%/webapps/xgate/img/ja/bg_dot.gif
-%%T%%/webapps/xgate/img/ja/bg_top.gif
-%%T%%/webapps/xgate/img/ja/block.gif
-%%T%%/webapps/xgate/img/ja/dot_gray.gif
-%%T%%/webapps/xgate/img/ja/english.gif
-%%T%%/webapps/xgate/img/ja/help.gif
-%%T%%/webapps/xgate/img/ja/import.gif
-%%T%%/webapps/xgate/img/ja/japanese.gif
-%%T%%/webapps/xgate/img/ja/l_bar.gif
-%%T%%/webapps/xgate/img/ja/logo.gif
-%%T%%/webapps/xgate/img/ja/menu1_2.gif
-%%T%%/webapps/xgate/img/ja/menu2_2.gif
-%%T%%/webapps/xgate/img/ja/menu3_2.gif
-%%T%%/webapps/xgate/img/ja/orange.gif
-%%T%%/webapps/xgate/img/ja/t_bar.gif
-%%T%%/webapps/xgate/img/ja/transparent.gif
-%%T%%/webapps/xgate/img/ja/u_bar.gif
-%%T%%/webapps/xgate/index.jsp
-%%T%%/webapps/xgate/pc/address.js
-%%T%%/webapps/xgate/pc/base.js
-%%T%%/webapps/xgate/pc/base_send.js
-%%T%%/webapps/xgate/pc/break-all.js
-%%T%%/webapps/xgate/pc/caution.jsp
-%%T%%/webapps/xgate/pc/help/ja/address.html
-%%T%%/webapps/xgate/pc/help/ja/first.html
-%%T%%/webapps/xgate/pc/help/ja/index.html
-%%T%%/webapps/xgate/pc/help/ja/list.html
-%%T%%/webapps/xgate/pc/help/ja/login.html
-%%T%%/webapps/xgate/pc/help/ja/mailbox.html
-%%T%%/webapps/xgate/pc/help/ja/user.html
-%%T%%/webapps/xgate/pc/help/ja/write.html
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-%%T%%/webapps/xgate/pc/img/attach.gif
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-%%T%%/webapps/xgate/pc/img/dot_green.gif
-%%T%%/webapps/xgate/pc/img/icon_addEDIT.gif
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-%%T%%/webapps/xgate/pc/img/icon_mail1.gif
-%%T%%/webapps/xgate/pc/img/icon_mail1_att.gif
-%%T%%/webapps/xgate/pc/img/icon_mail2.gif
-%%T%%/webapps/xgate/pc/img/icon_mail2_att.gif
-%%T%%/webapps/xgate/pc/img/line_bottom.gif
-%%T%%/webapps/xgate/pc/img/line_top.gif
-%%T%%/webapps/xgate/pc/img/mailbox_close.gif
-%%T%%/webapps/xgate/pc/img/mailbox_close2.gif
-%%T%%/webapps/xgate/pc/img/mailbox_open.gif
-%%T%%/webapps/xgate/pc/img/mailbox_open2.gif
-%%T%%/webapps/xgate/pc/img/space.gif
-%%T%%/webapps/xgate/pc/img/title_error.gif
-%%T%%/webapps/xgate/pc/img/title_info.gif
-%%T%%/webapps/xgate/pc/img/title_login.gif
-%%T%%/webapps/xgate/pc/img/transparent.gif
-%%T%%/webapps/xgate/pc/index.jsp
-%%T%%/webapps/xgate/pc/js/en/address.js
-%%T%%/webapps/xgate/pc/js/en/base.js
-%%T%%/webapps/xgate/pc/js/en/base_send.js
-%%T%%/webapps/xgate/pc/js/en/sendmail.js
-%%T%%/webapps/xgate/pc/js/ja/sendmail.js
-%%T%%/webapps/xgate/pda/img/address.gif
-%%T%%/webapps/xgate/pda/img/bottom.gif
-%%T%%/webapps/xgate/pda/img/cmdlist.gif
-%%T%%/webapps/xgate/pda/img/copy.gif
-%%T%%/webapps/xgate/pda/img/delete.gif
-%%T%%/webapps/xgate/pda/img/detail.gif
-%%T%%/webapps/xgate/pda/img/dot.gif
-%%T%%/webapps/xgate/pda/img/find.gif
-%%T%%/webapps/xgate/pda/img/folder.gif
-%%T%%/webapps/xgate/pda/img/logout.gif
-%%T%%/webapps/xgate/pda/img/mailbox.gif
-%%T%%/webapps/xgate/pda/img/move.gif
-%%T%%/webapps/xgate/pda/img/newmail.gif
-%%T%%/webapps/xgate/pda/img/nextmail.gif
-%%T%%/webapps/xgate/pda/img/reload.gif
-%%T%%/webapps/xgate/pda/img/reply.gif
-%%T%%/webapps/xgate/pda/img/replyall.gif
-%%T%%/webapps/xgate/pda/img/return.gif
-%%T%%/webapps/xgate/pda/img/space.gif
-%%T%%/webapps/xgate/pda/img/title.gif
-%%T%%/webapps/xgate/pda/img/top.gif
-%%T%%/webapps/xgate/pda/img/trans.gif
-%%T%%/webapps/xgate/pda/img/unread.gif
-%%T%%/webapps/xgate/pda/img/xgate_logo.gif
-%%T%%/webapps/xgate/wml/NewYear.bmp
-%%T%%/webapps/xgate/wml/NewYear.png
-%%T%%/webapps/xgate/wml/Xmas.bmp
-%%T%%/webapps/xgate/wml/Xmas.png
-%%T%%/webapps/xgate/wml/index.jsp
-%%T%%/webapps/xgate/wml/index_e.jsp
-@owner
-@group
-@dir %%T%%/webapps/xgate/help/en
-@dir %%T%%/webapps/xgate/WEB-INF/work
-@dir %%T%%/webapps/xgate/WEB-INF/template/account/ja
-@dir /var/log/xgate
diff --git a/textproc/Makefile b/textproc/Makefile
index d82df719572b..a3197a1d515d 100644
--- a/textproc/Makefile
+++ b/textproc/Makefile
@@ -531,10 +531,8 @@
     SUBDIR += ocaml-csv
     SUBDIR += ocaml-expat
     SUBDIR += ocaml-text
-    SUBDIR += ocaml-tyxml
     SUBDIR += odt2txt
     SUBDIR += openfts
-    SUBDIR += opengrm-ngram
     SUBDIR += openjade
     SUBDIR += opensched
     SUBDIR += opensp
diff --git a/textproc/ocaml-tyxml/Makefile b/textproc/ocaml-tyxml/Makefile
deleted file mode 100644
index e77ca0ac0ad2..000000000000
--- a/textproc/ocaml-tyxml/Makefile
+++ /dev/null
@@ -1,34 +0,0 @@
-# Created by: Jaap Boender <jaapb@kerguelen.org>
-# $FreeBSD$
-
-PORTNAME=	tyxml
-PORTVERSION=	2.2.0
-CATEGORIES=	textproc
-MASTER_SITES=	http://ocsigen.org/download/
-PKGNAMEPREFIX=	ocaml-
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	OCaml XML typing library
-
-LICENSE=	LGPL21_SSLEX
-LICENSE_NAME=	Lesser GPL 2.1 with a special OpenSSL exception clause
-LICENSE_FILE=	${WRKSRC}/COPYING
-LICENSE_PERMS=	dist-mirror dist-sell pkg-mirror pkg-sell auto-accept
-
-DEPRECATED=	Depends on BROKEN and expiring www/ocaml-net
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${SA_DIR}/netstring/netstring.a:www/ocaml-net
-RUN_DEPENDS=	${SA_DIR}/netstring/netstring.a:www/ocaml-net
-
-USES=			gmake
-USE_OCAML=		yes
-USE_OCAML_FINDLIB=	yes
-USE_OCAML_LDCONFIG=	yes
-USE_OCAML_CAMLP4=	yes
-USE_OCAMLFIND_PLIST=	yes
-
-SA_DIR=			${LOCALBASE}/${OCAML_SITELIBDIR}
-MAKE_ENV+=		INSTALLDIR="${STAGEDIR}${SA_DIR}"
-
-.include <bsd.port.mk>
diff --git a/textproc/ocaml-tyxml/distinfo b/textproc/ocaml-tyxml/distinfo
deleted file mode 100644
index 60e3baa5d9f0..000000000000
--- a/textproc/ocaml-tyxml/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (tyxml-2.2.0.tar.gz) = 8eab54f5fd7e9f5df3ac894123bd5abb124d741411a0ad5333e5058e44325f84
-SIZE (tyxml-2.2.0.tar.gz) = 105748
diff --git a/textproc/ocaml-tyxml/files/patch-Makefile b/textproc/ocaml-tyxml/files/patch-Makefile
deleted file mode 100644
index 4c1d8045c00c..000000000000
--- a/textproc/ocaml-tyxml/files/patch-Makefile
+++ /dev/null
@@ -1,28 +0,0 @@
-$NetBSD: patch-Makefile,v 1.2 2013/06/11 14:52:40 jaapb Exp $
-
---- Makefile.orig	2012-12-07 15:15:22.000000000 +0000
-+++ Makefile
-@@ -52,19 +52,20 @@ files/META.tyxml: files/META.in Makefile
- 	  $< > $@
- 
- install:
-+	mkdir -p ${INSTALLDIR}
- 	$(OCAMLFIND) install ${PACKAGENAME} \
--	  -patch-version ${VERSION} \
-+	  -patch-version ${VERSION} -destdir ${INSTALLDIR} \
- 	  files/META ${INTF} ${IMPL} ${NATIMPL} \
- 	  ${MLI_TO_INSTALL}
- 
- install-byte:
- 	$(OCAMLFIND) install ${PACKAGENAME} \
--	  -patch-version ${VERSION} \
-+	  -patch-version ${VERSION} -destdir ${INSTALLDIR} \
- 	  files/META ${INTF} ${IMPL} ${MLI_TO_INSTALL}
- 
- install-opt:
- 	$(OCAMLFIND) install ${PACKAGENAME} \
--	  -patch-version ${VERSION} \
-+	  -patch-version ${VERSION} -destdir ${INSTALLDIR} \
- 	  files/META ${INTF} ${NATIMPL} ${MLI_TO_INSTALL}
- 
- uninstall:
diff --git a/textproc/ocaml-tyxml/files/patch-lib_Makefile b/textproc/ocaml-tyxml/files/patch-lib_Makefile
deleted file mode 100644
index 10efb10e7601..000000000000
--- a/textproc/ocaml-tyxml/files/patch-lib_Makefile
+++ /dev/null
@@ -1,13 +0,0 @@
-$NetBSD: patch-lib_Makefile,v 1.1 2013/06/11 14:52:40 jaapb Exp $
-
---- lib/Makefile.orig	2012-12-07 15:15:22.000000000 +0000
-+++ lib/Makefile
-@@ -13,7 +13,7 @@ DUCE_INTF  := xml_sigs_duce.mli xhtml_ty
- 
- DUCE_FILES := xml_print_duce.ml xhtml_duce.ml
- 
--LIBS     := -package netstring
-+LIBS     := -package netstring,netstring-pcre
- 
- # SYNTAX := -ppopt ../syntax/pa_include.cmo -package camlp4 -syntax camlp4o
- 
diff --git a/textproc/ocaml-tyxml/pkg-descr b/textproc/ocaml-tyxml/pkg-descr
deleted file mode 100644
index eba1afbf6d7f..000000000000
--- a/textproc/ocaml-tyxml/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-TyXML is an OCaml library that allows you to build XML trees whose validity is
-insured by the typechecker. It supports XHTML 1.0 and 1.1, HTML5 and SVG
-(partial).
-
-WWW: http://ocsigen.org/tyxml/
diff --git a/textproc/opengrm-ngram/Makefile b/textproc/opengrm-ngram/Makefile
deleted file mode 100644
index 9a432cfbfe17..000000000000
--- a/textproc/opengrm-ngram/Makefile
+++ /dev/null
@@ -1,25 +0,0 @@
-# Created by: Dmitry Sivachenko <mitya@yandex-team.ru>
-# $FreeBSD$
-
-PORTNAME=	opengrm-ngram
-PORTVERSION=	1.3.1
-PORTREVISION=	2
-CATEGORIES=	textproc
-MASTER_SITES=	http://openfst.cs.nyu.edu/twiki/pub/GRM/NGramDownload/
-
-MAINTAINER=	demon@FreeBSD.org
-COMMENT=	Library for making n-gram language models encoded as weighted FSTs
-
-LICENSE=	APACHE20
-
-BROKEN=		fails to build
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LIB_DEPENDS=	libfst.so:math/openfst
-
-USES=		compiler:c++11-lib libtool localbase
-USE_LDCONFIG=	yes
-GNU_CONFIGURE=	yes
-
-.include <bsd.port.mk>
diff --git a/textproc/opengrm-ngram/distinfo b/textproc/opengrm-ngram/distinfo
deleted file mode 100644
index ca749a0022f2..000000000000
--- a/textproc/opengrm-ngram/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1471695211
-SHA256 (opengrm-ngram-1.3.1.tar.gz) = fd862680405000bbc789d0826237cca3295d0b778e5c0e2fa5e7762d33d3fbf2
-SIZE (opengrm-ngram-1.3.1.tar.gz) = 14695197
diff --git a/textproc/opengrm-ngram/files/patch-src-bin-Makefile.in b/textproc/opengrm-ngram/files/patch-src-bin-Makefile.in
deleted file mode 100644
index 0e30db2bc8be..000000000000
--- a/textproc/opengrm-ngram/files/patch-src-bin-Makefile.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/bin/Makefile.in.orig	2016-08-20 15:15:24.687217000 +0300
-+++ src/bin/Makefile.in	2016-08-20 15:15:27.844638000 +0300
-@@ -351,7 +351,7 @@
- top_builddir = @top_builddir@
- top_srcdir = @top_srcdir@
- AM_CPPFLAGS = -I$(srcdir)/../include
--AM_LDFLAGS = -L/usr/local/lib/fst -lfstfar -lfst -lm -ldl
-+AM_LDFLAGS = -L/usr/local/lib/fst -lfstfar -lfst -lm
- dist_noinst_SCRIPTS = ngram.sh ngramfrac.sh
- ngramapply_SOURCES = ngramapply_main.cc
- ngramapply_LDADD = ../lib/libngram.la
diff --git a/textproc/opengrm-ngram/files/patch-src-test-Makefile.in b/textproc/opengrm-ngram/files/patch-src-test-Makefile.in
deleted file mode 100644
index 564ffddf2eb1..000000000000
--- a/textproc/opengrm-ngram/files/patch-src-test-Makefile.in
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/test/Makefile.in.orig	2016-08-20 15:16:41.132906000 +0300
-+++ src/test/Makefile.in	2016-08-20 15:16:48.256944000 +0300
-@@ -494,7 +494,7 @@
- top_builddir = @top_builddir@
- top_srcdir = @top_srcdir@
- AM_CPPFLAGS = -I$(srcdir)/../include
--AM_LDFLAGS = -L/usr/local/lib/fst -lfstfar -lfst -lm -ldl
-+AM_LDFLAGS = -L/usr/local/lib/fst -lfstfar -lfst -lm
- ngramhisttest_SOURCES = ngramhisttest.cc
- ngramhisttest_LDADD = -lfstscript ../lib/libngram.la ../lib/libngramhist.la
- ngramrandtest_SOURCES = ngramrandtest.cc
diff --git a/textproc/opengrm-ngram/pkg-descr b/textproc/opengrm-ngram/pkg-descr
deleted file mode 100644
index 9f995ff21dd1..000000000000
--- a/textproc/opengrm-ngram/pkg-descr
+++ /dev/null
@@ -1,8 +0,0 @@
-The OpenGrm NGram library is used for making and modifying n-gram language
-models encoded as weighted finite-state transducers (FSTs).  It makes use of
-functionality in the OpenFst library to create, access and manipulate n-gram
-models.  Operations for counting, smoothing, pruning, applying, and
-evaluating models as well as support for distributed computation are among
-those provided.  It was developed by contributors from OHSU and Google Research.
-
-WWW: http://www.openfst.org/twiki/bin/view/GRM/NGramLibrary
diff --git a/textproc/opengrm-ngram/pkg-plist b/textproc/opengrm-ngram/pkg-plist
deleted file mode 100644
index 6775f4ac6ae5..000000000000
--- a/textproc/opengrm-ngram/pkg-plist
+++ /dev/null
@@ -1,61 +0,0 @@
-bin/ngramapply
-bin/ngramcontext
-bin/ngramcount
-bin/ngramhisttest
-bin/ngraminfo
-bin/ngrammake
-bin/ngrammarginalize
-bin/ngrammerge
-bin/ngramperplexity
-bin/ngramprint
-bin/ngramrandgen
-bin/ngramrandtest
-bin/ngramread
-bin/ngramshrink
-bin/ngramsort
-bin/ngramsplit
-bin/ngramsymbols
-bin/ngramtransfer
-include/ngram/hist-arc.h
-include/ngram/hist-mapper.h
-include/ngram/ngram-bayes-model-merge.h
-include/ngram/ngram-hist-merge.h
-include/ngram/util.h
-include/ngram/lexicographic-map.h
-include/ngram/ngram-absolute.h
-include/ngram/ngram-complete.h
-include/ngram/ngram-context-merge.h
-include/ngram/ngram-context-prune.h
-include/ngram/ngram-context.h
-include/ngram/ngram-count-merge.h
-include/ngram/ngram-count-of-counts.h
-include/ngram/ngram-count-prune.h
-include/ngram/ngram-count.h
-include/ngram/ngram-input.h
-include/ngram/ngram-katz.h
-include/ngram/ngram-kneser-ney.h
-include/ngram/ngram-make.h
-include/ngram/ngram-marginalize.h
-include/ngram/ngram-merge.h
-include/ngram/ngram-model-merge.h
-include/ngram/ngram-model.h
-include/ngram/ngram-mutable-model.h
-include/ngram/ngram-output.h
-include/ngram/ngram-randgen.h
-include/ngram/ngram-relentropy.h
-include/ngram/ngram-seymore-shrink.h
-include/ngram/ngram-shrink.h
-include/ngram/ngram-split.h
-include/ngram/ngram-transfer.h
-include/ngram/ngram-unsmoothed.h
-include/ngram/ngram-witten-bell.h
-include/ngram/ngram.h
-lib/hist-arc.so
-lib/hist-arc.so.0
-lib/hist-arc.so.0.0.0
-lib/libngram.so
-lib/libngram.so.2
-lib/libngram.so.2.0.0
-lib/libngramhist.so
-lib/libngramhist.so.2
-lib/libngramhist.so.2.0.0
diff --git a/www/Makefile b/www/Makefile
index 1f80b9142827..6e41676e62c3 100644
--- a/www/Makefile
+++ b/www/Makefile
@@ -553,7 +553,6 @@
     SUBDIR += nuvolaplayer-yandex-music
     SUBDIR += nuvolaplayer-youtube
     SUBDIR += obhttpd
-    SUBDIR += ocaml-net
     SUBDIR += opencart
     SUBDIR += opera
     SUBDIR += opera-linuxplugins
diff --git a/www/ocaml-net/Makefile b/www/ocaml-net/Makefile
deleted file mode 100644
index 957c9ce535d1..000000000000
--- a/www/ocaml-net/Makefile
+++ /dev/null
@@ -1,92 +0,0 @@
-# Created by: Stephane Legrand <stephane@FreeBSD.org>
-# $FreeBSD$
-
-PORTNAME=	net
-PORTVERSION=	4.0.4
-PORTREVISION=	1
-CATEGORIES=	www
-MASTER_SITES=	http://download.camlcity.org/download/
-PKGNAMEPREFIX=	ocaml-
-DISTNAME=	ocaml${PORTNAME}-${PORTVERSION}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	OCaml modules for Internet applications
-
-LICENSE=	GPLv2
-
-BROKEN=		fails to build
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-BUILD_DEPENDS=	${SA_DIR}/pcre/pcre.a:devel/ocaml-pcre
-RUN_DEPENDS=	${SA_DIR}/pcre/pcre.a:devel/ocaml-pcre
-
-CONFLICTS=	ocaml-equeue-2* ocaml-netclient-0*
-
-USES=			gmake
-USE_OCAML=		yes
-USE_OCAML_FINDLIB=	yes
-USE_OCAML_CAMLP4=	yes
-USE_OCAML_LDCONFIG=	yes
-USE_OCAMLFIND_PLIST=	yes
-HAS_CONFIGURE=		yes
-CONFIGURE_ARGS=		-disable-gtk \
-			-enable-pcre
-
-ALL_TARGET=		all opt
-MAKE_JOBS_UNSAFE=	yes
-
-PLIST_FILES=	bin/netplex-admin \
-		bin/ocamlrpcgen
-
-DOCSDIR=	${PREFIX}/share/doc/ocaml/${PKGNAMEPREFIX}${PORTNAME}
-EXAMPLESDIR=	${PREFIX}/share/examples/ocaml/${PKGNAMEPREFIX}${PORTNAME}
-SA_DIR=		${LOCALBASE}/${OCAML_SITELIBDIR}
-PORTDOCS=	*
-PORTEXAMPLES=	*
-
-OCAML_PKGDIRS=	netsys netshm equeue shell netstring rpc-generator \
-		rpc pop smtp netclient netcgi2 netgssapi netplex \
-		netcgi2-plex netcamlbox netmulticore rpc-auth-local \
-		netstring-pcre netunidata
-OCAML_LDLIBS=	${OCAML_PKGDIRS:S/^/${OCAML_SITELIBDIR}\//}
-
-OPTIONS_DEFINE=	NETHTTPD GTK2 GNUTLS APACHE ZIP EXAMPLES DOCS
-OPTIONS_DEFAULT=GNUTLS
-NETHTTPD_DESC=	Integrated HTTP daemon
-ZIP_DESC=	Compression support
-APACHE_DESC=	Apache mod connector (experimental)
-GNUTLS_DESC=	SSL/TLS support via GnuTLS
-
-GTK2_BUILD_DEPENDS=	lablgtk2:x11-toolkits/ocaml-lablgtk2
-GTK2_RUN_DEPENDS=	lablgtk2:x11-toolkits/ocaml-lablgtk2
-ZIP_BUILD_DEPENDS=	${SA_DIR}/zip/zip.a:archivers/ocaml-zip
-ZIP_RUN_DEPENDS=	${SA_DIR}/zip/zip.a:archivers/ocaml-zip
-NETHTTPD_CONFIGURE_ON=	-with-nethttpd
-NETHTTPD_VARS=		OCAML_PKGDIRS+=nethttpd
-GTK2_CONFIGURE_ON=	-enable-gtk2
-GTK2_VARS=		OCAML_PKGDIRS+=equeue-gtk2
-GNUTLS_USES=		pkgconfig
-GNUTLS_LIB_DEPENDS=	libgnutls.so:security/gnutls
-GNUTLS_CONFIGURE_ON=	-enable-gnutls
-GNUTLS_VARS=		OCAML_PKGDIRS+=nettls-gnutls
-APACHE_BROKEN=		does not build with APACHE option enabled
-APACHE_USE=		APACHE=22+
-APACHE_CONFIGURE_ON=	-enable-apache -apxs ${APXS} -apache ${HTTPD}
-APACHE_VARS=		OCAML_PKGDIRS+=netcgi2-apache
-ZIP_CONFIGURE_ON=	-enable-zip
-ZIP_VARS=		OCAML_PKGDIRS+=netzip
-
-post-patch:
-	@${REINPLACE_CMD} -e 's/camlzip/zip/' ${WRKSRC}/configure
-
-post-install-DOCS-on:
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}/
-	@(cd ${WRKSRC}/doc/ && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}/)
-
-post-install-EXAMPLES-on:
-	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}/
-	@(cd ${WRKSRC}/examples/ && \
-		${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}/)
-
-.include <bsd.port.mk>
diff --git a/www/ocaml-net/distinfo b/www/ocaml-net/distinfo
deleted file mode 100644
index 3f55a2956068..000000000000
--- a/www/ocaml-net/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (ocamlnet-4.0.4.tar.gz) = becaa6c2b0c1ae6a3fb05139928442e5d4a685ea5033017060a86d70114e5f72
-SIZE (ocamlnet-4.0.4.tar.gz) = 4336176
diff --git a/www/ocaml-net/files/patch-Makefile.rules b/www/ocaml-net/files/patch-Makefile.rules
deleted file mode 100644
index d67668fdbba6..000000000000
--- a/www/ocaml-net/files/patch-Makefile.rules
+++ /dev/null
@@ -1,12 +0,0 @@
---- Makefile.rules.orig	2015-04-26 23:27:28 UTC
-+++ Makefile.rules
-@@ -155,7 +155,8 @@ realuninstall: $(UNINSTOTHER) uninstall-
- .PHONY: install-findlib
- install-findlib: META
- 	files=`$(COLLECT_FILES) *.mli *.cmi *.cma *.cmxa *.a dll* META $(INSTALL_EXTRA)` && \
--	$(OCAMLFIND) install $(PKGNAME) $$files
-+	$(OCAMLFIND) install -destdir $(DESTDIR)/$(PREFIX)/lib/ocaml/site-lib \
-+	-ldconf /dev/null $(PKGNAME) $$files
- 
- .PHONY: uninstall-findlib
- uninstall-findlib:
diff --git a/www/ocaml-net/pkg-descr b/www/ocaml-net/pkg-descr
deleted file mode 100644
index b5a4637b2374..000000000000
--- a/www/ocaml-net/pkg-descr
+++ /dev/null
@@ -1,18 +0,0 @@
-A collection of modules for the Objective Caml language which focus
-on application-level Internet protocols and conventions.
-
-Ocamlnet consists of a number of libraries:
-
-    * netstring is about processing strings that occur in network context
-    * netcgi1 and netcgi2 focus on portable web applications
-    * nethttpd is a web server component (HTTP server implementation)
-    * netplex is a generic server framework
-    * rpc implements OncRPC
-    * netclient implements clients for HTTP, FTP, and Telnet
-    * equeue is an event queue used for many protocol implementations
-    * shell is about calling external commands
-    * netshm provides shared memory for IPC purposes
-    * netsys contains bindings for system functions
-    * smtp and pop are two further client implementations
-
-WWW: https://sourceforge.net/projects/ocamlnet/
diff --git a/x11/Makefile b/x11/Makefile
index 0748defd76f2..8978ab7bc0bd 100644
--- a/x11/Makefile
+++ b/x11/Makefile
@@ -62,7 +62,6 @@
     SUBDIR += eaglemode
     SUBDIR += editres
     SUBDIR += emprint
-    SUBDIR += enventor
     SUBDIR += erun
     SUBDIR += eterm
     SUBDIR += evieext
diff --git a/x11/enventor/Makefile b/x11/enventor/Makefile
deleted file mode 100644
index d1508c05131d..000000000000
--- a/x11/enventor/Makefile
+++ /dev/null
@@ -1,37 +0,0 @@
-# $FreeBSD$
-
-PORTNAME=	enventor
-PORTVERSION=	1.0.0
-PORTREVISION=	1
-CATEGORIES=	x11 enlightenment
-MASTER_SITES=	http://download.enlightenment.org/rel/apps/${PORTNAME}/
-DIST_SUBDIR=	enlightenment
-
-MAINTAINER=	itbot@bk.ru
-COMMENT=	Dynamic EDC Editor
-
-LICENSE=	BSD2CLAUSE
-LICENSE_FILE=	${WRKSRC}/COPYING
-
-BROKEN=		fails to build
-DEPRECATED=	Broken for more than 6 months
-EXPIRATION_DATE=	2018-06-06
-
-LIB_DEPENDS=	libefl.so:devel/efl
-
-USES=		compiler:c11 desktop-file-utils gmake libtool pkgconfig \
-		tar:xz
-USE_LDCONFIG=	yes
-
-GNU_CONFIGURE=	yes
-
-OPTIONS_DEFINE=		NLS
-OPTIONS_SUB=		yes
-
-NLS_USES=		gettext
-NLS_CONFIGURE_ENABLE=	nls
-
-post-install:
-	${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libenventor.so.1.0.0
-
-.include <bsd.port.mk>
diff --git a/x11/enventor/distinfo b/x11/enventor/distinfo
deleted file mode 100644
index 84d51959a29f..000000000000
--- a/x11/enventor/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1494515219
-SHA256 (enlightenment/enventor-1.0.0.tar.xz) = 6756707381de81d3cd6c445f7735927aa4dc853afdb04354d5267078b32bd134
-SIZE (enlightenment/enventor-1.0.0.tar.xz) = 2694824
diff --git a/x11/enventor/pkg-descr b/x11/enventor/pkg-descr
deleted file mode 100644
index 953ee4180178..000000000000
--- a/x11/enventor/pkg-descr
+++ /dev/null
@@ -1,5 +0,0 @@
-Enventor, which is also known as EDC (Edje Data Collections) Editor, is a EDC
-script editor tool that supports text editing and previewing functions for the
-EDC source code.
-
-WWW: https://www.enlightenment.org/
diff --git a/x11/enventor/pkg-plist b/x11/enventor/pkg-plist
deleted file mode 100644
index a8a2e0b7054a..000000000000
--- a/x11/enventor/pkg-plist
+++ /dev/null
@@ -1,133 +0,0 @@
-bin/enventor
-include/enventor-1/Enventor.h
-include/enventor-1/Enventor_Eo.h
-include/enventor-1/Enventor_Legacy.h
-include/enventor-1/enventor_object.eo.h
-include/enventor-1/enventor_object.eo.legacy.h
-lib/libenventor.a
-lib/libenventor.so
-lib/libenventor.so.1
-lib/libenventor.so.1.0.0
-libdata/pkgconfig/enventor.pc
-share/applications/enventor.desktop
-%%DATADIR%%/autocomp/autocomp.eet
-%%DATADIR%%/color/edc.eet
-%%DATADIR%%/color/syntax_template.dat
-%%DATADIR%%/docs/README
-%%DATADIR%%/help/COMMAND
-%%DATADIR%%/help/DEVEL
-%%DATADIR%%/help/HISTORY
-%%DATADIR%%/help/INTRO
-%%DATADIR%%/help/SHORTCUT
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BAT1.svg
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BAT2.svg
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BG1.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BG2.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BG3.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BUTTON_BG.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BUTTON_BG_DOWN.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_BUTTON_BG_HOVER.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_CHERRY.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_FIELD.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_ARROW.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_BADGE.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_BADGE_DOWN.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_CLIP.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_CLIP_DOWN.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_DOCK.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_DOCK_DOWN.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_LOCK.png
-%%DATADIR%%/images/ENVENTOR_EMBEDDED_ICON_LOCK_DOWN.png
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