diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2020-11-07 13:47:41 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2020-11-07 13:47:41 +0000 |
| commit | 07edabadbe274cda6741a3fe4c07bfcf1f32e6b0 (patch) | |
| tree | c87832fe18057dc3b4ad243d92f7fca0a196eae4 /biology/bowtie2 | |
| parent | b279b4a16bec6aad593d4f5545ddf2cc74fcc99d (diff) | |
| download | ports-07edabadbe274cda6741a3fe4c07bfcf1f32e6b0.tar.gz ports-07edabadbe274cda6741a3fe4c07bfcf1f32e6b0.zip | |
biology/bowtie2: Upgrade to 2.4.2
Minor bug fix release
Reported by: portscout
Notes
Notes:
svn path=/head/; revision=554390
Diffstat (limited to 'biology/bowtie2')
| -rw-r--r-- | biology/bowtie2/Makefile | 3 | ||||
| -rw-r--r-- | biology/bowtie2/distinfo | 6 | ||||
| -rw-r--r-- | biology/bowtie2/files/patch-Makefile | 23 |
3 files changed, 20 insertions, 12 deletions
diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index ef073f9f9aef..1387fa48ba66 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -2,8 +2,7 @@ PORTNAME= bowtie2 DISTVERSIONPREFIX= v -DISTVERSION= 2.4.1 -PORTREVISION= 2 +DISTVERSION= 2.4.2 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org diff --git a/biology/bowtie2/distinfo b/biology/bowtie2/distinfo index da64a3e3c0f3..100d7cba6fb8 100644 --- a/biology/bowtie2/distinfo +++ b/biology/bowtie2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1583075948 -SHA256 (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 9fb25513886bf294217dd9c5ca26d18dd5e02e0ae999935ac7ba5700befc492e -SIZE (BenLangmead-bowtie2-v2.4.1_GH0.tar.gz) = 10588621 +TIMESTAMP = 1604617529 +SHA256 (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = ea33a1562faf759b21b3a905e20b87a3524ac4e53af8cd723d9a9f31ee159c8a +SIZE (BenLangmead-bowtie2-v2.4.2_GH0.tar.gz) = 10590144 diff --git a/biology/bowtie2/files/patch-Makefile b/biology/bowtie2/files/patch-Makefile index 85d870c135cc..092870a96abf 100644 --- a/biology/bowtie2/files/patch-Makefile +++ b/biology/bowtie2/files/patch-Makefile @@ -1,6 +1,15 @@ ---- Makefile.orig 2020-03-01 15:16:08 UTC +--- Makefile.orig 2020-11-05 23:04:50 UTC +++ Makefile -@@ -200,22 +200,22 @@ endif +@@ -24,7 +24,7 @@ + PREFIX := /usr/local + bindir := $(PREFIX)/bin + +-ARCH := $(shell uname -m) ++ARCH := $(shell uname -p) + LDLIBS := -lz + GCC_PREFIX := $(shell dirname `which gcc`) + GCC_SUFFIX := +@@ -201,22 +201,22 @@ endif BITS := 32 SSE_FLAG := -msse2 @@ -14,17 +23,17 @@ +else ifeq (aarch64,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd - CPPFLAGS := -Ithird_party/simde + CXXFLAGS += -fopenmp-simd + CPPFLAGS += -Ithird_party/simde -else ifeq (s390x,$(shell uname -m)) +else ifeq (s390x,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd - CPPFLAGS := -Ithird_party/simde + CXXFLAGS += -fopenmp-simd + CPPFLAGS += -Ithird_party/simde SANITIZER_FLAGS := -else ifeq (ppc64le,$(shell uname -m)) +else ifeq (ppc64le,$(shell uname -p)) BITS := 64 SSE_FLAG := - CXXFLAGS := -fopenmp-simd + CXXFLAGS += -fopenmp-simd |