diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2017-11-28 15:21:01 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2017-11-28 15:21:01 +0000 |
| commit | af6cd877c01e06e1c687bc41a6d3958d0bd72afb (patch) | |
| tree | fe0bc1ce24d138b69acc8a5277e13ef29d127160 /biology/bwa | |
| parent | 8676612e69b3a67dcee322e0170865f640a996ea (diff) | |
| download | ports-af6cd877c01e06e1c687bc41a6d3958d0bd72afb.tar.gz ports-af6cd877c01e06e1c687bc41a6d3958d0bd72afb.zip | |
biology/bwa: Upgrade to 0.7.17
Approved by: jrm (mentor)
Differential Revision: https://reviews.freebsd.org/D13283
Notes
Notes:
svn path=/head/; revision=455045
Diffstat (limited to 'biology/bwa')
| -rw-r--r-- | biology/bwa/Makefile | 10 | ||||
| -rw-r--r-- | biology/bwa/distinfo | 5 |
2 files changed, 10 insertions, 5 deletions
diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile index 5bd5cca03c82..29e7ed076253 100644 --- a/biology/bwa/Makefile +++ b/biology/bwa/Makefile @@ -2,25 +2,29 @@ # $FreeBSD$ PORTNAME= bwa -PORTVERSION= 0.7.9a +PORTVERSION= 0.7.17 +DISTVERSIONPREFIX=v CATEGORIES= biology -MASTER_SITES= SF/bio-bwa/ MAINTAINER= bacon4000@gmail.com COMMENT= Burrows-Wheeler sequence aligner LICENSE= GPLv3 +# From 0.7.9a: Recheck for 0.7.17. BROKEN_aarch64= fails to compile: invalid conversion between vector type and integer type BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2" BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2" BROKEN_powerpc64= fails to compile: ksw.c: emmintrin.h: No such file or directory -USES= perl5 shebangfix tar:bzip2 +USES= gmake perl5 shebangfix tar:bzip2 SHEBANG_FILES= qualfa2fq.pl xa2multi.pl USE_PERL5= run +USE_GITHUB= yes +GH_ACCOUNT= lh3 + PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz .include <bsd.port.pre.mk> diff --git a/biology/bwa/distinfo b/biology/bwa/distinfo index 70c5bb90053e..268929e34dc5 100644 --- a/biology/bwa/distinfo +++ b/biology/bwa/distinfo @@ -1,2 +1,3 @@ -SHA256 (bwa-0.7.9a.tar.bz2) = f5ad30e4e5ea86a8dcd6febcb6f620a75c82b03024f64a572017c295a962eadc -SIZE (bwa-0.7.9a.tar.bz2) = 166193 +TIMESTAMP = 1511844744 +SHA256 (lh3-bwa-v0.7.17_GH0.tar.gz) = 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd +SIZE (lh3-bwa-v0.7.17_GH0.tar.gz) = 232593 |