diff options
| author | Wen Heping <wen@FreeBSD.org> | 2013-12-20 15:29:07 +0000 |
|---|---|---|
| committer | Wen Heping <wen@FreeBSD.org> | 2013-12-20 15:29:07 +0000 |
| commit | 1fc27b753e14e84f860265d36f4ca6396bf00714 (patch) | |
| tree | 2416edf6e892755c4f4031197e9c0295b23d4f13 /biology/clustalw | |
| parent | ea0e2c342121bf1b273d75c2e49a88a44617534e (diff) | |
| download | ports-1fc27b753e14e84f860265d36f4ca6396bf00714.tar.gz ports-1fc27b753e14e84f860265d36f4ca6396bf00714.zip | |
- Fix build with clang/libc++.
- Support staging.
PR: 184974
Submitted by: tijl@
Notes
Notes:
svn path=/head/; revision=337026
Diffstat (limited to 'biology/clustalw')
| -rw-r--r-- | biology/clustalw/Makefile | 5 | ||||
| -rw-r--r-- | biology/clustalw/files/patch-src-general-VectorOutOfRange.h | 10 |
2 files changed, 12 insertions, 3 deletions
diff --git a/biology/clustalw/Makefile b/biology/clustalw/Makefile index 3ddb03097b5f..bb2ac2c625db 100644 --- a/biology/clustalw/Makefile +++ b/biology/clustalw/Makefile @@ -10,7 +10,7 @@ MASTER_SITES= ftp://ftp.ebi.ac.uk/pub/software/clustalw2/%SUBDIR%/ \ MASTER_SITE_SUBDIR= ${PORTVERSION} MAINTAINER= wen@FreeBSD.org -COMMENT= A multiple alignment program for DNA or proteins +COMMENT= Multiple alignment program for DNA or proteins RESTRICTED= No commercial use. @@ -20,8 +20,7 @@ GNU_CONFIGURE= yes PLIST_FILES= bin/clustalw bin/clustalw2 -NO_STAGE= yes post-install: - ${LN} -sf clustalw2 ${PREFIX}/bin/clustalw + ${LN} -sf clustalw2 ${STAGEDIR}${PREFIX}/bin/clustalw .include <bsd.port.mk> diff --git a/biology/clustalw/files/patch-src-general-VectorOutOfRange.h b/biology/clustalw/files/patch-src-general-VectorOutOfRange.h new file mode 100644 index 000000000000..ffc535d7d5d8 --- /dev/null +++ b/biology/clustalw/files/patch-src-general-VectorOutOfRange.h @@ -0,0 +1,10 @@ +--- src/general/VectorOutOfRange.h.orig 2013-12-20 23:16:13.000000000 +0800 ++++ src/general/VectorOutOfRange.h 2013-12-20 23:16:37.000000000 +0800 +@@ -5,6 +5,7 @@ + */ + #include <stdexcept> + #include <exception> ++#include <string> + namespace clustalw + { + |