diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2020-03-31 06:42:22 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2020-03-31 06:42:22 +0000 |
| commit | d3d451a22f65dd96baf9ae63f04e702273ff174a (patch) | |
| tree | dd6a8f91afce1983f91e2ee6ddd9e51da94a2312 /biology/cufflinks | |
| parent | 5c3d7001b715a866d510eb2fcb0ac522519c9de4 (diff) | |
| download | ports-d3d451a22f65dd96baf9ae63f04e702273ff174a.tar.gz ports-d3d451a22f65dd96baf9ae63f04e702273ff174a.zip | |
biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89
Add the pull request that fixes the boost::thread build failures.
Notes
Notes:
svn path=/head/; revision=529953
Diffstat (limited to 'biology/cufflinks')
| -rw-r--r-- | biology/cufflinks/Makefile | 8 | ||||
| -rw-r--r-- | biology/cufflinks/distinfo | 8 | ||||
| -rw-r--r-- | biology/cufflinks/files/patch-src_biascorrection.h | 11 |
3 files changed, 10 insertions, 17 deletions
diff --git a/biology/cufflinks/Makefile b/biology/cufflinks/Makefile index 713abda00aba..99f7d937d106 100644 --- a/biology/cufflinks/Makefile +++ b/biology/cufflinks/Makefile @@ -2,11 +2,13 @@ PORTNAME= cufflinks DISTVERSIONPREFIX= v -DISTVERSION= 2.2.1-83 -DISTVERSIONSUFFIX= -gb4fa050 -PORTREVISION= 2 +DISTVERSION= 2.2.1-89 +DISTVERSIONSUFFIX= -gdc3b0cb CATEGORIES= biology +PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/ +PATCHFILES+= ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github.com/cole-trapnell-lab/cufflinks/pull/127 + MAINTAINER= yuri@FreeBSD.org COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc diff --git a/biology/cufflinks/distinfo b/biology/cufflinks/distinfo index e4a7bd90431f..0fcac78e9a88 100644 --- a/biology/cufflinks/distinfo +++ b/biology/cufflinks/distinfo @@ -1,3 +1,5 @@ -TIMESTAMP = 1558818522 -SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 0b26b02c080115d4262d466503bdc43db5ff5583d8122e77355782dc7cbe0522 -SIZE (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 8804967 +TIMESTAMP = 1585636520 +SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 3947a7266b4f58a92b3944b8e205c8875a7c0ce9ea19b394ea82ff77b91999be +SIZE (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 8807044 +SHA256 (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = d64446bab1b683dbdb51b33992694bbbc6511aa4eacd2b95812da75e090dff47 +SIZE (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = 3779 diff --git a/biology/cufflinks/files/patch-src_biascorrection.h b/biology/cufflinks/files/patch-src_biascorrection.h deleted file mode 100644 index aacb4431ca38..000000000000 --- a/biology/cufflinks/files/patch-src_biascorrection.h +++ /dev/null @@ -1,11 +0,0 @@ ---- src/biascorrection.h.orig 2019-05-25 21:22:56 UTC -+++ src/biascorrection.h -@@ -15,7 +15,7 @@ - #include <vector> - #include <list> - #include <string> --#include <boost/tr1/unordered_map.hpp> -+#include <boost/unordered_map.hpp> - #include <boost/thread.hpp> - #include "common.h" - |