diff options
| author | Yuri Victorovich <yuri@FreeBSD.org> | 2018-07-13 07:02:16 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2018-07-13 07:02:16 +0000 |
| commit | 4b34dd614af5c8c405a20466af22c7be1d3fdbcc (patch) | |
| tree | 8658fa0979842322bda3889158e32340f0383f29 /biology/exonerate | |
| parent | 84b01e747d485d29e377643ce03bd8a97de1a67a (diff) | |
| download | ports-4b34dd614af5c8c405a20466af22c7be1d3fdbcc.tar.gz ports-4b34dd614af5c8c405a20466af22c7be1d3fdbcc.zip | |
New port: biology/exonerate: Generic tool for sequence alignment
PR: 229180
Submitted by: Motomichi Matsuzaki <mzaki@niid.go.jp>
Notes
Notes:
svn path=/head/; revision=474558
Diffstat (limited to 'biology/exonerate')
| -rw-r--r-- | biology/exonerate/Makefile | 22 | ||||
| -rw-r--r-- | biology/exonerate/distinfo | 3 | ||||
| -rw-r--r-- | biology/exonerate/pkg-descr | 10 | ||||
| -rw-r--r-- | biology/exonerate/pkg-plist | 31 |
4 files changed, 66 insertions, 0 deletions
diff --git a/biology/exonerate/Makefile b/biology/exonerate/Makefile new file mode 100644 index 000000000000..a5ea2fe2b654 --- /dev/null +++ b/biology/exonerate/Makefile @@ -0,0 +1,22 @@ +# Created by: Motomichi Matsuzaki <mzaki@niid.go.jp> +# $FreeBSD$ + +PORTNAME= exonerate +PORTVERSION= 2.4.0 +CATEGORIES= biology +MASTER_SITES= http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/ + +MAINTAINER= mzaki@niid.go.jp +COMMENT= Generic tool for sequence alignment + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +USES= gnome pkgconfig +GNU_CONFIGURE= yes +USE_GNOME= glib20 +TEST_TARGET= check + +MAKE_JOBS_UNSAFE= yes + +.include <bsd.port.mk> diff --git a/biology/exonerate/distinfo b/biology/exonerate/distinfo new file mode 100644 index 000000000000..9c7c86aeed30 --- /dev/null +++ b/biology/exonerate/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1529394154 +SHA256 (exonerate-2.4.0.tar.gz) = f849261dc7c97ef1f15f222e955b0d3daf994ec13c9db7766f1ac7e77baa4042 +SIZE (exonerate-2.4.0.tar.gz) = 520899 diff --git a/biology/exonerate/pkg-descr b/biology/exonerate/pkg-descr new file mode 100644 index 000000000000..1cd652065a70 --- /dev/null +++ b/biology/exonerate/pkg-descr @@ -0,0 +1,10 @@ +Exonerate is a tool for various types of pairwise sequence comparison. +It allows us to align sequences using many alignment models including +est2genome, protein2genome, and so on. + +Citation: + +Slater, G. S. C. and Birney, E. (2005) Automated generation of heuristics +for biological sequence comparison. BMC Bioinformatics 6:31. + +WWW: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate diff --git a/biology/exonerate/pkg-plist b/biology/exonerate/pkg-plist new file mode 100644 index 000000000000..b3532b0526cd --- /dev/null +++ b/biology/exonerate/pkg-plist @@ -0,0 +1,31 @@ +bin/exonerate +bin/ipcress +bin/exonerate-server +bin/fastaclean +bin/fastaclip +bin/fastachecksum +bin/fastacomposition +bin/fastadiff +bin/fastaexplode +bin/fastafetch +bin/fastahardmask +bin/fastaindex +bin/fastalength +bin/fastanrdb +bin/fastaoverlap +bin/fastareformat +bin/fastaremove +bin/fastarevcomp +bin/fastasoftmask +bin/fastasort +bin/fastasplit +bin/fastasubseq +bin/fastatranslate +bin/fastavalidcds +bin/fasta2esd +bin/fastaannotatecdna +bin/esd2esi +man/man1/exonerate-server.1.gz +man/man1/fastautils.1.gz +man/man1/exonerate.1.gz +man/man1/ipcress.1.gz |